View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17718_low_10 (Length: 363)
Name: NF17718_low_10
Description: NF17718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17718_low_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 363
Target Start/End: Original strand, 20174431 - 20174802
Alignment:
| Q |
1 |
gttaactgcagtggcagaggggataaggatgttcaaactgctatgaaatacttgaaaatttgaacgtacatgattcagtctccaacatagttgaattgtt |
100 |
Q |
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| T |
20174431 |
gttaactgcagtggcagaggggataaggatgttcaaactgctatgaaatacttgaaaatttgaaagtacatgattcagtctccaacatagttgaacagtt |
20174530 |
T |
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| Q |
101 |
cagctcttgattgacctattttcttttcttattgagattgatgtgaagttgactgagtttgaggaggatcacttgtgaaagaa---------------tt |
185 |
Q |
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| T |
20174531 |
cagctcttgattgacctattttcttttcttattgagattgatgtgaagttgacttagtttgaggaggatcacttgtgaaagaattcttctgggaagagtt |
20174630 |
T |
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| Q |
186 |
tagtttttggaaaccaatatatgcctaggaattttctaaatgttgtaacaattattacaaggcatcaaaggatactctcattgtttgatttgaagaataa |
285 |
Q |
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| T |
20174631 |
tagtttttggaaaccaatatatgcctaggaattttctaaatgttgttacaattattacagggcatcaaaggatactgtcattgtttgatttgaagaataa |
20174730 |
T |
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| Q |
286 |
aatagcatggagtcatgtaaaattatgtatcatatataaataagagatattcgttttgcctgaatgaagcattgtcta |
363 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
20174731 |
aatagc------tcatgtaaaattatgtatcatatataaataagagatattcgttttgacagaatgaagcattgtcta |
20174802 |
T |
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