View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17718_low_11 (Length: 355)
Name: NF17718_low_11
Description: NF17718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17718_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 40283782 - 40283432
Alignment:
| Q |
1 |
acgggaccattcgaattcagcgacctcccaaagggccattttatgtctctagcaaagcgattgatgaacacgctgcaaaatttgtgaattatgctaggtt |
100 |
Q |
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| T |
40283782 |
acgggaccattcgaattcagcgacctcccaaagggccattttatgtctctagcaaagcgattgatgaacacgctgcaaaatttgtgaattatgctaggtt |
40283683 |
T |
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| Q |
101 |
gctttactttatagtcgttttttgtgttttggtctacaacattgttttattgactaaaatctacttttaggtcgtgtgagtatacttctacgggcctgat |
200 |
Q |
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| T |
40283682 |
gctttactttatagtcgttttttgtgttttggtctacaacattgttttattgactaaaatctatttttaggtcgtgtgagtatacttctacgggcctgat |
40283583 |
T |
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| Q |
201 |
agtgcttggtgcttttcaaatagctgcccgcatctactatttgttacatcgtagaagacgttgcagtgaactgtgaaaaaggtactgtatactgggatat |
300 |
Q |
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| T |
40283582 |
agtgcttggtgcttttcaaatagctgcccgcatctactatttgttacatcgtagaagacgttgcagtgaactgtgaaaaaggtactgtatactgggatat |
40283483 |
T |
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| Q |
301 |
tcttctgattagtggtggtgacaaacaaaatcttattaaattcttctcact |
351 |
Q |
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| T |
40283482 |
tcttctgattagtggtggtgacaaacaaaatcttattaaattcttttcact |
40283432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 3 - 160
Target Start/End: Complemental strand, 40291248 - 40291090
Alignment:
| Q |
3 |
gggaccattcgaattcagcgacctcccaaagggccattttatgtctctagcaaagcgattgatgaacacgctgcaaaatttgtgaattatgctaggttgc |
102 |
Q |
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| T |
40291248 |
gggaccgttcgaattcaacgacctcttaaagggccattttatgtctctggcaaaacgattgatgaaaacattgcaaatttcgtggattatgcaaggttgc |
40291149 |
T |
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| Q |
103 |
tttactttatag-tcgttttttgtgttttggtctacaacattgttttattgactaaaat |
160 |
Q |
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| T |
40291148 |
tttactttatagttggttttgtgtcttttggtctacaagaattttttattgactaaaat |
40291090 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 40264933 - 40264864
Alignment:
| Q |
1 |
acgggaccattcgaattcagcgacctcccaaagggccattttatgtctctagcaaagcgattgatgaaca |
70 |
Q |
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| T |
40264933 |
acgggactgttcgaattcagagacctcccaaaggaccattttatgtttcccgcaaaacgattgatgaaca |
40264864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 6 - 50
Target Start/End: Complemental strand, 40256454 - 40256410
Alignment:
| Q |
6 |
accattcgaattcagcgacctcccaaagggccattttatgtctct |
50 |
Q |
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| T |
40256454 |
accattcgaattcagcgaccctccaaagggccattttatgtctct |
40256410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 40271127 - 40271063
Alignment:
| Q |
7 |
ccattcgaattcagcgacctcccaaagggccattttatgtctct-agcaaagcgattgatgaacac |
71 |
Q |
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| T |
40271127 |
ccattcgaattcagcgacctcacaatgggccattttatgtgtctcaacaaa-cgattgatgaacac |
40271063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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