View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17718_low_12 (Length: 347)
Name: NF17718_low_12
Description: NF17718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17718_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 299; Significance: 1e-168; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 4195720 - 4196039
Alignment:
| Q |
18 |
ggaaatggaatcataatgcacaccatcttgcttgtaatagtcttgattttgatcctgatcttcaacatttaccnnnnnnngttgtttcctccaagttctt |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
4195720 |
ggaaatggaatcataatgcacaccatcttgcttgtaatagtcttgattttgatcctgatcttcaacatttacctttttttgttgtttcctccaagttctt |
4195819 |
T |
|
| Q |
118 |
cacttcactaacttcttgtttttatggaagaaagatgaattttgattcttttgctaggttcttggttagttaccagcattggagttattatcctgttatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4195820 |
cacttcactaacttcttgtttttatggaagaaagatgaattttgattcttttgctaggttcttggttagttaccagcattggagttattatcctgttatg |
4195919 |
T |
|
| Q |
218 |
tgttttgctaggcttaatttgtttgctcaatctttctttttgttgttttctaatagaaaagtgcctaatagaaagatggaacttttagggttggctctgt |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4195920 |
tgttttgctaggcttaatttgtttgctcaatctttctttttgttgttttctaatagaaaagtgcctaatagaaagatggaacttttagggttggctctgt |
4196019 |
T |
|
| Q |
318 |
tttggatttggtaccctttg |
337 |
Q |
| |
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|||||||||||||||||||| |
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| T |
4196020 |
tttggatttggtaccctttg |
4196039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 18 - 337
Target Start/End: Original strand, 4186688 - 4187007
Alignment:
| Q |
18 |
ggaaatggaatcataatgcacaccatcttgcttgtaatagtcttgattttgatcctgatcttcaacatttaccnnnnnnngttgtttcctccaagttctt |
117 |
Q |
| |
|
|||||||||| || ||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||| ||||| || || |||||||| |
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| T |
4186688 |
ggaaatggaaccacaatgcacaccaccttgcttgtaatagtcttgattttgaccctgaccttcaacatttacccttttttgttgtctcttcaaagttctt |
4186787 |
T |
|
| Q |
118 |
cacttcactaacttcttgtttttatggaagaaagatgaattttgattcttttgctaggttcttggttagttaccagcattggagttattatcctgttatg |
217 |
Q |
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|||||||| |||||||||||| ||| || |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| ||| |
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| T |
4186788 |
tacttcactcacttcttgttttcatgataggaagatgaactttgattcttttgctaggttcttggttagttaccaacattggagttattgtcctggtata |
4186887 |
T |
|
| Q |
218 |
tgttttgctaggcttaatttgtttgctcaatctttctttttgttgttttctaatagaaaagtgcctaatagaaagatggaacttttagggttggctctgt |
317 |
Q |
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||||| |||||| | ||||||||||||| |||||| || ||| | | |||||||| ||||| || ||||||||||| |||||||| || ||| | ||| |
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| T |
4186888 |
tgtttagctaggttcaatttgtttgctcgatcttttttcttgctactgtctaataggaaagttcccaatagaaagatagaacttttgggtttgcttgtgt |
4186987 |
T |
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| Q |
318 |
tttggatttggtaccctttg |
337 |
Q |
| |
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|||||||||||||||||||| |
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| T |
4186988 |
tttggatttggtaccctttg |
4187007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 76
Target Start/End: Complemental strand, 24417406 - 24417348
Alignment:
| Q |
18 |
ggaaatggaatcataatgcacaccatcttgcttgtaatagtcttgattttgatcctgat |
76 |
Q |
| |
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||||||||| ||||||||| || ||| ||||||| ||||||||||||| |||||||||| |
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| T |
24417406 |
ggaaatggactcataatgctcatcatattgcttgcaatagtcttgattatgatcctgat |
24417348 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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