View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17718_low_15 (Length: 313)
Name: NF17718_low_15
Description: NF17718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17718_low_15 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 8 - 313
Target Start/End: Complemental strand, 4196327 - 4196022
Alignment:
| Q |
8 |
aaccaaaggagaaatcttcctcaaattacatcgtggaagacgcggaaacaaatgatgctcaatctgaaactgcaaaccaccatgaaaccaatccatccaa |
107 |
Q |
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| T |
4196327 |
aaccaaaggtgaaatcttcctcaaattacatcgtggaagacgcggaaacaaatgatgctcaatctgaaactgcaaaccaccatgaaaccaatccatccaa |
4196228 |
T |
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| Q |
108 |
gaagaacacttcacatcaagagttccatgagcttgcttctcaaaccaatcatgagccgtcggtggaccaacataaacactagccgaaaaatgattcaaag |
207 |
Q |
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| T |
4196227 |
gaagaacacttcacatcaagagttccatgagcttgcttctcaaaccaatcatgagccgtcggtggaccaacataaacactagccgaaaaatgattcaaag |
4196128 |
T |
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| Q |
208 |
taaactgaacatgttgaatcccagtcacacaaaaactagcaagcacaaataaaaccctctcaccccaattaggtaaacaagaaaccaacaaagggtacca |
307 |
Q |
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| T |
4196127 |
taaactgaacatgttgaatcccagtcacacaaaaactagcaagcacaaataaaaccctctcaccccaattaggtaaacaagaaaccaacaaagggtacca |
4196028 |
T |
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| Q |
308 |
aatcca |
313 |
Q |
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|||||| |
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| T |
4196027 |
aatcca |
4196022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 120 - 313
Target Start/End: Complemental strand, 4187183 - 4186990
Alignment:
| Q |
120 |
acatcaagagttccatgagcttgcttctcaaaccaatcatgagccgtcggtggaccaacataaacactagccgaaaaatgattcaaagtaaactgaacat |
219 |
Q |
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| T |
4187183 |
acatcaagagtcccactagtttgcttctcaaaccaatcatgcgatgttggttgaccaatatagacacttgcagaaaaatgattgaaagtgaactgaacat |
4187084 |
T |
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| Q |
220 |
gttgaatcccagtcacacaaaaactagcaagcacaaataaaaccctctcaccccaattaggtaaacaagaaaccaacaaagggtaccaaatcca |
313 |
Q |
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| T |
4187083 |
gttgaataccagtcacagaaaaactagcaattacaaacaaaactctctcaccccaattaggtaaacaagaaaccaacaaagggtaccaaatcca |
4186990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 106
Target Start/End: Original strand, 24416839 - 24416894
Alignment:
| Q |
51 |
ggaaacaaatgatgctcaatctgaaactgcaaaccaccatgaaaccaatccatcca |
106 |
Q |
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| T |
24416839 |
ggaaacaaatgatgttcaagctgaaactgcaaaccaccaaagaaccaatccatcca |
24416894 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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