View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17718_low_2 (Length: 493)
Name: NF17718_low_2
Description: NF17718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17718_low_2 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 409; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Complemental strand, 29817088 - 29816611
Alignment:
| Q |
1 |
agcaaaatgctacacaagcaaacaacttccataagcagtatcagatgtaggcaaaatcttcaatattcgaaacttgtttgagtggccactgttttaaaga |
100 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29817088 |
agcaaaatgctgcactagcaaacaacttccataagcagtatcagatgtaggcaaaatcttcaatattcgaaacttgtttgagtggccactgttttaaaga |
29816989 |
T |
|
| Q |
101 |
agccgggcttgaggaagattttcaagttatgctacggtgactacagtttatattggtgagattcagtcaaagaaaatctctgatacttagtgtggtttca |
200 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29816988 |
agctgggcttgaggaagattttcaagttatgctacggtgactacagtttatattggtgagattcagtcaaagaaaatctctgatacttagtgtggtttca |
29816889 |
T |
|
| Q |
201 |
attcgaatttgatgtacaagannnnnnngatctatgtataaattcataaaccctgttcttctaatattccatctatatttatagataaatttgagatgaa |
300 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29816888 |
attcgaatttgatgtacaagatttttttgatctatgtataaattcataaaccctgttcttctaatattccatctatatttatagataaatttgagatgaa |
29816789 |
T |
|
| Q |
301 |
ctcctttttacttttctttggtgcctctcagattttattttctgataaaatgatgtacatttttcnnnnnnnnnnnncacacgaaacaagaaaggctact |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29816788 |
ctcctttttacttttctttggtgcctctcagattttattttctgataaaatgatgtacatttttctatatatatatacacacgaaacaagaaaggctact |
29816689 |
T |
|
| Q |
401 |
tagaagtagtagatatggtgataatattcattagtgattaggaactaattactgttgaataatctgaggctactagct |
478 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29816688 |
tagaagtagtagatatggtgataatattcattagtgattaggaactaattactgttgaataatctgaggctactagct |
29816611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 157 - 365
Target Start/End: Complemental strand, 29825243 - 29825033
Alignment:
| Q |
157 |
tgagattcagtcaaagaaaatctctgatacttagtgtggtttcaattcgaatttgatgtacaagannnnnnngatctatgtataaattcataaaccctgt |
256 |
Q |
| |
|
|||| ||||||||||||||| ||||| ||||||||||||||||||||| | |||||||| |||| |||||| |||||||| ||||| ||||| |
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|
| T |
29825243 |
tgaggttcagtcaaagaaaacctctgttacttagtgtggtttcaattcatacttgatgtataagattgtttgaatctatctataaatttataaatcctgt |
29825144 |
T |
|
| Q |
257 |
tct--tctaatattccatctatatttatagataaatttgagatgaactcctttttacttttctttggtgcctctcagattttattttctgataaaatgat |
354 |
Q |
| |
|
| | ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| || |
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| T |
29825143 |
tatcatctaatattccatctatatttatagataaatttgagatgaactcctttttaattttctttggtgcctctcagattttattttatgataaaatcat |
29825044 |
T |
|
| Q |
355 |
gtacatttttc |
365 |
Q |
| |
|
|||||| |||| |
|
|
| T |
29825043 |
gtacatctttc |
29825033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 1 - 114
Target Start/End: Complemental strand, 29825352 - 29825239
Alignment:
| Q |
1 |
agcaaaatgctacacaagcaaacaacttccataagcagtatcagatgtaggcaaaatcttcaatattcgaaacttgtttgagtggccactgttttaaaga |
100 |
Q |
| |
|
||||||||||||||||||| |||||||| || ||||||||||||||| ||||||||||||||||||| ||||||| |||||||||||| ||||||||||| |
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|
| T |
29825352 |
agcaaaatgctacacaagccaacaacttacagaagcagtatcagatgcaggcaaaatcttcaatatttgaaacttatttgagtggccattgttttaaaga |
29825253 |
T |
|
| Q |
101 |
agccgggcttgagg |
114 |
Q |
| |
|
||| |||||||||| |
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|
| T |
29825252 |
agctgggcttgagg |
29825239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 328
Target Start/End: Complemental strand, 37570077 - 37570026
Alignment:
| Q |
277 |
atttatagataaatttgagatgaactcctttttacttttctttggtgcctct |
328 |
Q |
| |
|
||||||||||||||||||||||||||| | | ||| ||||||||||| |||| |
|
|
| T |
37570077 |
atttatagataaatttgagatgaactcatgtatacctttctttggtgactct |
37570026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 424
Target Start/End: Complemental strand, 29825019 - 29824982
Alignment:
| Q |
387 |
caagaaaggctacttagaagtagtagatatggtgataa |
424 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
29825019 |
caagaaaggctacttagaagcagtagctatggtgataa |
29824982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 328
Target Start/End: Original strand, 21262223 - 21262274
Alignment:
| Q |
277 |
atttatagataaatttgagatgaactcctttttacttttctttggtgcctct |
328 |
Q |
| |
|
||||||||||||||||||||||||||| | | ||| ||||||||||| |||| |
|
|
| T |
21262223 |
atttatagataaatttgagatgaactcatgtatacctttctttggtgactct |
21262274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 328
Target Start/End: Original strand, 37503036 - 37503087
Alignment:
| Q |
277 |
atttatagataaatttgagatgaactcctttttacttttctttggtgcctct |
328 |
Q |
| |
|
||||||||||||||||||||||||||| | | ||| ||||||||||| |||| |
|
|
| T |
37503036 |
atttatagataaatttgagatgaactcatgtatacctttctttggtgactct |
37503087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 328
Target Start/End: Complemental strand, 8408300 - 8408249
Alignment:
| Q |
277 |
atttatagataaatttgagatgaactcctttttacttttctttggtgcctct |
328 |
Q |
| |
|
||||||||||||||||||||||||||| | | ||| ||||||||||| |||| |
|
|
| T |
8408300 |
atttatagataaatttgagatgaactcatgtatacctttctttggtgactct |
8408249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 277 - 328
Target Start/End: Complemental strand, 32041507 - 32041456
Alignment:
| Q |
277 |
atttatagataaatttgagatgaactcctttttacttttctttggtgcctct |
328 |
Q |
| |
|
||||||||||||||||||||||||||| | | ||| ||||||||||| |||| |
|
|
| T |
32041507 |
atttatagataaatttgagatgaactcatgtatacctttctttggtgactct |
32041456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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