View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17718_low_4 (Length: 486)

Name: NF17718_low_4
Description: NF17718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17718_low_4
NF17718_low_4
[»] chr5 (18 HSPs)
chr5 (16-464)||(34590169-34590620)
chr5 (217-273)||(13697904-13697959)
chr5 (222-281)||(5963409-5963468)
chr5 (218-281)||(32372495-32372557)
chr5 (216-281)||(6593178-6593243)
chr5 (216-281)||(32703575-32703639)
chr5 (418-466)||(2941982-2942030)
chr5 (217-273)||(28776855-28776910)
chr5 (217-281)||(30291140-30291204)
chr5 (216-264)||(38105007-38105055)
chr5 (403-466)||(1621522-1621585)
chr5 (373-461)||(16869923-16870011)
chr5 (218-280)||(8089679-8089741)
chr5 (217-275)||(40426632-40426689)
chr5 (216-281)||(42573906-42573971)
chr5 (218-274)||(5559610-5559666)
chr5 (216-264)||(9106719-9106767)
chr5 (216-272)||(41059598-41059654)
[»] scaffold0040 (1 HSPs)
scaffold0040 (364-466)||(49872-49974)
[»] chr4 (16 HSPs)
chr4 (216-281)||(26520356-26520421)
chr4 (216-265)||(47399412-47399461)
chr4 (218-280)||(2987069-2987131)
chr4 (216-273)||(19039659-19039716)
chr4 (215-251)||(45104563-45104599)
chr4 (403-466)||(20988786-20988849)
chr4 (403-466)||(52327343-52327406)
chr4 (403-466)||(52831496-52831559)
chr4 (216-278)||(30066896-30066958)
chr4 (215-257)||(39178386-39178428)
chr4 (218-272)||(50298411-50298465)
chr4 (216-281)||(47771874-47771938)
chr4 (217-273)||(437375-437430)
chr4 (217-281)||(17204008-17204071)
chr4 (403-459)||(41758558-41758614)
chr4 (220-264)||(42461172-42461216)
[»] chr3 (10 HSPs)
chr3 (216-281)||(30574039-30574104)
chr3 (216-279)||(47132246-47132308)
chr3 (216-281)||(34034040-34034104)
chr3 (238-281)||(39980619-39980662)
chr3 (233-281)||(20669076-20669122)
chr3 (216-281)||(29002967-29003031)
chr3 (237-281)||(29520615-29520659)
chr3 (226-278)||(40665317-40665369)
chr3 (218-250)||(46434750-46434782)
chr3 (215-275)||(46886830-46886889)
[»] chr2 (11 HSPs)
chr2 (217-274)||(12313306-12313363)
chr2 (217-281)||(9174694-9174757)
chr2 (225-281)||(9833042-9833098)
chr2 (215-250)||(12140443-12140478)
chr2 (403-466)||(15804446-15804509)
chr2 (419-466)||(27679144-27679191)
chr2 (220-281)||(26626759-26626819)
chr2 (232-281)||(32364851-32364900)
chr2 (216-281)||(41407170-41407234)
chr2 (215-268)||(41880642-41880695)
chr2 (364-466)||(44810061-44810163)
[»] chr1 (5 HSPs)
chr1 (217-273)||(31517872-31517928)
chr1 (216-271)||(35058893-35058948)
chr1 (211-273)||(27820475-27820536)
chr1 (218-270)||(48064189-48064241)
chr1 (216-273)||(37841877-37841933)
[»] chr8 (6 HSPs)
chr8 (218-273)||(2833465-2833520)
chr8 (218-273)||(2840239-2840294)
chr8 (218-273)||(2844926-2844981)
chr8 (218-281)||(14956432-14956494)
chr8 (238-280)||(41589583-41589625)
chr8 (216-257)||(31751707-31751748)
[»] chr7 (10 HSPs)
chr7 (403-466)||(87257-87320)
chr7 (215-274)||(7612336-7612395)
chr7 (216-281)||(33672957-33673021)
chr7 (216-258)||(425971-426013)
chr7 (238-280)||(21619307-21619349)
chr7 (239-281)||(44777109-44777151)
chr7 (220-281)||(28900760-28900820)
chr7 (217-281)||(21568765-21568828)
chr7 (210-258)||(41668244-41668292)
chr7 (210-258)||(41668922-41668970)
[»] chr6 (4 HSPs)
chr6 (216-258)||(7946023-7946065)
chr6 (220-281)||(847941-848001)
chr6 (216-273)||(35069431-35069487)
chr6 (220-276)||(33890664-33890719)


Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 16 - 464
Target Start/End: Complemental strand, 34590620 - 34590169
Alignment:
Q  16 cataggctgtgaaggaaccatttgatgtagccttgagctattataactgagattaattttcgcaaacatagaagttgattgtcgatatcaaagttatgtc 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34590620 cataggctgtgaaggaaccatttgatgtagccttgagctattataactgagattaattttcggaaacatagaagttgattgtcgatatcaaagttatgtc 34590521  T
Q  116 tttttcaaatttttctgcttctgttagattggtacattgaaggagttctaggtttttcttggtacttgtgaacatcatttagattcattattaactagat 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  34590520 tttttcaaatttttctgcttctgttagattggtacattgaaggagttctaggttttttttggtacttgtgaacatcatttagattcattattaactagat 34590421  T
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatgggtctgtttggcaacacannnnnnnngagcttat 315  Q
    ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||        ||||||||    
T  34590420 cctgtttggataaacgacttattttgcagcttataggataagtatttatcatgataagcacttatgggtctgtttggcaacgcattttttttgagcttat 34590321  T
Q  316 ggtttatgtcttatnnnnnnngacatgtttggtaag---cattgtcccattagcttgtagcttatttttacgaacttatagcgnnnnnnnataagctaat 412  Q
    ||||||||||||||       |||||||||||||||   |||||||||||||||||||||||||||||||| |||||||||||       ||||||||||    
T  34590320 ggtttatgtcttataaaaaaagacatgtttggtaagcgtcattgtcccattagcttgtagcttatttttaccaacttatagcgtttttttataagctaat 34590221  T
Q  413 ttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaatct 464  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34590220 ttgagtagcttaaagcttaacgtcttttatctcaattttacccatgtaatct 34590169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 13697959 - 13697904
Alignment:
Q  217 ctgtttggataaactacttattttgcagcttataggataagcatttatcatgataag 273  Q
    |||||||||||||| |||||||| ||||||||||  |||||||||||||||||||||    
T  13697959 ctgtttggataaacaacttattt-gcagcttataacataagcatttatcatgataag 13697904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 222 - 281
Target Start/End: Complemental strand, 5963468 - 5963409
Alignment:
Q  222 tggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    ||||||||| ||||| ||||||  |||||| |||||||||||||||||||||| ||||||    
T  5963468 tggataaacaacttaatttgcaatttatagcataagcatttatcatgataagcgcttatg 5963409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 281
Target Start/End: Original strand, 32372495 - 32372557
Alignment:
Q  218 tgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    ||||||||||||| |||||||| ||||||||||| | ||||| |||||||||||||| ||||||    
T  32372495 tgtttggataaacaacttattt-gcagcttatagcacaagcacttatcatgataagcccttatg 32372557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 6593178 - 6593243
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    ||||||||||||||| ||||| ||| |||||||||| |||| |||||||| ||||| || ||||||    
T  6593178 cctgtttggataaacaacttaatttacagcttatagcataatcatttatcttgatacgcgcttatg 6593243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 32703639 - 32703575
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    ||||||| || |||| |||||||| ||||||||||| | |||||||||||||||||||| ||||||    
T  32703639 cctgtttagaaaaacaacttattt-gcagcttatagcacaagcatttatcatgataagcgcttatg 32703575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 466
Target Start/End: Original strand, 2941982 - 2942030
Alignment:
Q  418 tagcttaaagcttaacatcttttatctcaattttacccatgtaatctta 466  Q
    ||||||| |||||| |||| |||||||||||||||||| ||||||||||    
T  2941982 tagcttagagcttatcatcctttatctcaattttacccttgtaatctta 2942030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 273
Target Start/End: Original strand, 28776855 - 28776910
Alignment:
Q  217 ctgtttggataaactacttattttgcagcttataggataagcatttatcatgataag 273  Q
    |||||||||||||| |||||||| |||||||||||  |||||| |||||||||||||    
T  28776855 ctgtttggataaacaacttattt-gcagcttatagcctaagcacttatcatgataag 28776910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 30291140 - 30291204
Alignment:
Q  217 ctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    |||||||||||| | ||||| |||||||||||||| |||| || |||||||||||| | ||||||    
T  30291140 ctgtttggataaccaacttaatttgcagcttatagcataaacacttatcatgataaacgcttatg 30291204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 264
Target Start/End: Complemental strand, 38105055 - 38105007
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttat 264  Q
    ||||||||||||||| ||||||||||||||||||||  ||||| |||||    
T  38105055 cctgtttggataaacaacttattttgcagcttatagcgtaagcgtttat 38105007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 466
Target Start/End: Complemental strand, 1621585 - 1621522
Alignment:
Q  403 ataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaatctta 466  Q
    |||||||||||  ||||||||| |||||| ||  ||||||||||||||||||| || |||||||    
T  1621585 ataagctaattcaagtagcttatagcttatcagtttttatctcaattttacccttgcaatctta 1621522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 373 - 461
Target Start/End: Complemental strand, 16870011 - 16869923
Alignment:
Q  373 cttatttttacgaacttatagcgnnnnnnnataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaa 461  Q
    ||||||||||| | |||||||||       |||||||||||  ||||||||| |||||| ||| |||||| |||||||||||| |||||    
T  16870011 cttatttttactagcttatagcgttttttgataagctaattcaagtagcttatagcttatcattttttatttcaattttacccttgtaa 16869923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 280
Target Start/End: Original strand, 8089679 - 8089741
Alignment:
Q  218 tgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttat 280  Q
    ||||||||||||| ||||| |||| |||| |||| |||||  ||||||||||||||| |||||    
T  8089679 tgtttggataaacaacttaatttgtagctcatagcataagtgtttatcatgataagcgcttat 8089741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 275
Target Start/End: Original strand, 40426632 - 40426689
Alignment:
Q  217 ctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagca 275  Q
    |||||||||||||| ||| |||| ||||||||||| | ||||| |||||||||||||||    
T  40426632 ctgtttggataaacaactcattt-gcagcttatagcacaagcacttatcatgataagca 40426689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 42573971 - 42573906
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    |||||||||||||||  |||| ||||||||||||||  | |||  |||||||||||||| ||||||    
T  42573971 cctgtttggataaacagcttaatttgcagcttatagcctgagcgcttatcatgataagcgcttatg 42573906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 218 - 274
Target Start/End: Original strand, 5559610 - 5559666
Alignment:
Q  218 tgtttggataaactacttattttgcagcttataggataagcatttatcatgataagc 274  Q
    ||||||||||||| ||||| |||||||||||||  ||||   |||||||||||||||    
T  5559610 tgtttggataaacaacttaatttgcagcttatataataaatgtttatcatgataagc 5559666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 9106719 - 9106767
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttat 264  Q
    ||||||||  ||||| ||||||||||||||||| || ||||||||||||    
T  9106719 cctgtttgtgtaaacaacttattttgcagcttaaagcataagcatttat 9106767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 216 - 272
Target Start/End: Original strand, 41059598 - 41059654
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataa 272  Q
    ||||||||  ||||| ||||| |||| |||||||| |||||||| ||||||||||||    
T  41059598 cctgtttgtctaaacaacttaatttgtagcttatatgataagcacttatcatgataa 41059654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 364 - 466
Target Start/End: Complemental strand, 49974 - 49872
Alignment:
Q  364 agcttgtagcttatttttacgaacttatagcgnnnnnnnataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaatc 463  Q
    ||||| ||||||||||||| || |||||||||       |||||||||||  ||||||||| |||||| ||  ||||||||||||||||||| || ||||    
T  49974 agcttatagcttatttttaagagcttatagcggtttgtgataagctaattcaagtagcttatagcttatcactttttatctcaattttacccttgcaatc 49875  T
Q  464 tta 466  Q
    |||    
T  49874 tta 49872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 26520421 - 26520356
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    ||||||||||||||| ||||| ||||| |||| ||| |||||  ||||||||||||||||||||||    
T  26520421 cctgtttggataaacaacttaatttgctgcttctagcataagtgtttatcatgataagcacttatg 26520356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 47399412 - 47399461
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatc 265  Q
    ||||||||||||||| ||||| ||||||||||||||||||||| ||||||    
T  47399412 cctgtttggataaacaacttagtttgcagcttataggataagcgtttatc 47399461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 218 - 280
Target Start/End: Original strand, 2987069 - 2987131
Alignment:
Q  218 tgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttat 280  Q
    ||||||||||||| | ||| |||||||||||||  |||||  |||||||||||||||||||||    
T  2987069 tgtttggataaacaagttaatttgcagcttataacataagtgtttatcatgataagcacttat 2987131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 19039659 - 19039716
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataag 273  Q
    ||||||||||||||| ||||| |||||||||||||  ||| ||| |||||||||||||    
T  19039659 cctgtttggataaacaacttaatttgcagcttataatataggcaattatcatgataag 19039716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 251
Target Start/End: Complemental strand, 45104599 - 45104563
Alignment:
Q  215 tcctgtttggataaactacttattttgcagcttatag 251  Q
    |||||||||||||||||| ||||||||||||||||||    
T  45104599 tcctgtttggataaactaattattttgcagcttatag 45104563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 466
Target Start/End: Complemental strand, 20988849 - 20988786
Alignment:
Q  403 ataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaatctta 466  Q
    |||||||||||  ||||||||| |||||| ||| |||||||||||||||| || | ||||||||    
T  20988849 ataagctaattcaagtagcttatagcttatcattttttatctcaattttaaccctttaatctta 20988786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 466
Target Start/End: Original strand, 52327343 - 52327406
Alignment:
Q  403 ataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaatctta 466  Q
    |||||||||||  ||||||||||||||||  || |||| |||||||||||||| |||| |||||    
T  52327343 ataagctaattcaagtagcttaaagcttataattttttctctcaattttacccttgtagtctta 52327406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 466
Target Start/End: Original strand, 52831496 - 52831559
Alignment:
Q  403 ataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaatctta 466  Q
    |||||||||||  ||||||||| |||||| ||| |||||||||||||| |||| || |||||||    
T  52831496 ataagctaattcaagtagcttatagcttatcattttttatctcaatttgacccctgcaatctta 52831559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 278
Target Start/End: Complemental strand, 30066958 - 30066896
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcactt 278  Q
    |||||||| |||||| | ||| |||||||||||||| ||||||  |||| |||||||||||||    
T  30066958 cctgtttgcataaacaatttaatttgcagcttatagcataagcgcttataatgataagcactt 30066896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 215 - 257
Target Start/End: Complemental strand, 39178428 - 39178386
Alignment:
Q  215 tcctgtttggataaactacttattttgcagcttataggataag 257  Q
    |||||||||||||||| ||||||||| |||||||||| |||||    
T  39178428 tcctgtttggataaacaacttattttacagcttatagtataag 39178386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 218 - 272
Target Start/End: Original strand, 50298411 - 50298465
Alignment:
Q  218 tgtttggataaactacttattttgcagcttataggataagcatttatcatgataa 272  Q
    ||||||||||||| ||||| |||| ||||||||| |||| || ||||||||||||    
T  50298411 tgtttggataaacaacttaatttgaagcttatagcataaacacttatcatgataa 50298465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 47771874 - 47771938
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    |||||||||||||||  ||||||||| ||||||||| ||||||  ||||||| |||||| ||||||    
T  47771874 cctgtttggataaacagcttattttggagcttatagcataagcgcttatcat-ataagcgcttatg 47771938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 437430 - 437375
Alignment:
Q  217 ctgtttggataaactacttattttgcagcttataggataagcatttatcatgataag 273  Q
    |||||||||||||| |||||||| ||||||||||  | |||| ||||||||||||||    
T  437430 ctgtttggataaacgacttattt-gcagcttataatacaagcttttatcatgataag 437375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 17204008 - 17204071
Alignment:
Q  217 ctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    |||||||||||||| |||||||| ||||||||||| | ||||| |||||| ||||| | ||||||    
T  17204008 ctgtttggataaacaacttattt-gcagcttatagaacaagcacttatcacgataaccgcttatg 17204071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 403 - 459
Target Start/End: Original strand, 41758558 - 41758614
Alignment:
Q  403 ataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgt 459  Q
    |||||||||||  ||||||||| |||||| ||| || | ||||||||||||||||||    
T  41758558 ataagctaattcaagtagcttatagcttatcattttctctctcaattttacccatgt 41758614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 42461172 - 42461216
Alignment:
Q  220 tttggataaactacttattttgcagcttataggataagcatttat 264  Q
    ||||||||||| ||||| ||| |||||||||||||||||| ||||    
T  42461172 tttggataaacaacttaattttcagcttataggataagcacttat 42461216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 30574104 - 30574039
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    |||||||||||||||  | || |||||||||||||  |||||||||||||||||||||| ||||||    
T  30574104 cctgtttggataaacaccataatttgcagcttatatcataagcatttatcatgataagcgcttatg 30574039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 279
Target Start/End: Original strand, 47132246 - 47132308
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcactta 279  Q
    ||||||||||||||| ||||||||| || ||||||| | ||||| |||||||||||||||||||    
T  47132246 cctgtttggataaacaacttatttt-caccttatagcacaagcacttatcatgataagcactta 47132308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 34034040 - 34034104
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    ||||||||||||||| ||||||||| |||||||||| | | ||  |||||||||||||||||||||    
T  34034040 cctgtttggataaacaacttatttt-cagcttatagaacaggcgcttatcatgataagcacttatg 34034104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 281
Target Start/End: Original strand, 39980619 - 39980662
Alignment:
Q  238 tttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    |||||||||||||||| || || |||||||||||||||||||||    
T  39980619 tttgcagcttataggacaaacacttatcatgataagcacttatg 39980662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 281
Target Start/End: Original strand, 20669076 - 20669122
Alignment:
Q  233 cttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    |||| |||||||||||  | |||||||||||||||||||||||||||||    
T  20669076 cttagtttgcagctta--gtataagcatttatcatgataagcacttatg 20669122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 281
Target Start/End: Complemental strand, 29003031 - 29002967
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    ||||||||||||||  | |||||| ||||||||||| | |||| ||||||||||||| ||||||||    
T  29003031 cctgtttggataaataatttattt-gcagcttatagtaaaagcgtttatcatgataaacacttatg 29002967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 281
Target Start/End: Complemental strand, 29520659 - 29520615
Alignment:
Q  237 ttttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    ||||||||||||||| |||| || ||||||| |||||||||||||    
T  29520659 ttttgcagcttatagcataaacacttatcataataagcacttatg 29520615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 40665317 - 40665369
Alignment:
Q  226 taaactacttattttgcagcttataggataagcatttatcatgataagcactt 278  Q
    ||||| |||| ||||||||||||||| |||||   ||||||||||||||||||    
T  40665317 taaacaactttttttgcagcttatagcataagttcttatcatgataagcactt 40665369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 218 - 250
Target Start/End: Complemental strand, 46434782 - 46434750
Alignment:
Q  218 tgtttggataaactacttattttgcagcttata 250  Q
    ||||||||||||| |||||||||||||||||||    
T  46434782 tgtttggataaacaacttattttgcagcttata 46434750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 215 - 275
Target Start/End: Complemental strand, 46886889 - 46886830
Alignment:
Q  215 tcctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagca 275  Q
    |||||||||||||||| ||||| |||||||||||||| |||||   |||||||||| ||||    
T  46886889 tcctgtttggataaacaactta-tttgcagcttatagcataagtgcttatcatgattagca 46886830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 274
Target Start/End: Complemental strand, 12313363 - 12313306
Alignment:
Q  217 ctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagc 274  Q
    ||||||||||||||  ||||||||||||||||||| |||||||  |||||||||||||    
T  12313363 ctgtttggataaacatcttattttgcagcttatagtataagcacgtatcatgataagc 12313306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 9174694 - 9174757
Alignment:
Q  217 ctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    |||||||||||||| |||||||| |||||||||  ||| ||||||||||||||||| ||||||||    
T  9174694 ctgtttggataaacaacttattt-gcagcttatgagattagcatttatcatgataaacacttatg 9174757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 9833042 - 9833098
Alignment:
Q  225 ataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    |||||| ||||| ||| |||||||||| |||||||||||||||||||| ||||||||    
T  9833042 ataaacaacttaatttacagcttatagcataagcatttatcatgataaacacttatg 9833098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 250
Target Start/End: Original strand, 12140443 - 12140478
Alignment:
Q  215 tcctgtttggataaactacttattttgcagcttata 250  Q
    |||||||||||||||| |||||||||||||||||||    
T  12140443 tcctgtttggataaacaacttattttgcagcttata 12140478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 466
Target Start/End: Original strand, 15804446 - 15804509
Alignment:
Q  403 ataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaatctta 466  Q
    |||||||||||  ||||||||| |||||| |||  |||||||||||||||||| | ||||||||    
T  15804446 ataagctaattcaagtagcttatagcttatcattatttatctcaattttacccttctaatctta 15804509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 419 - 466
Target Start/End: Original strand, 27679144 - 27679191
Alignment:
Q  419 agcttaaagcttaacatcttttatctcaattttacccatgtaatctta 466  Q
    |||||| |||||| |||  |||||||||||||||||||||||||||||    
T  27679144 agcttatagcttatcattatttatctcaattttacccatgtaatctta 27679191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 281
Target Start/End: Original strand, 26626759 - 26626819
Alignment:
Q  220 tttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    ||||||||||| |||||||| ||||||||||| ||||||  ||||||||||||  |||||||    
T  26626759 tttggataaacaacttattt-gcagcttatagcataagctcttatcatgataaatacttatg 26626819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 232 - 281
Target Start/End: Complemental strand, 32364900 - 32364851
Alignment:
Q  232 acttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    |||||||||| ||||||||| || || | |||||||||||||||||||||    
T  32364900 acttattttgtagcttatagcatgagaacttatcatgataagcacttatg 32364851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 41407170 - 41407234
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    |||||||||||||||  ||| ||| ||||||||||| | ||||  |||||||||||||||||||||    
T  41407170 cctgtttggataaacagcttgttt-gcagcttatagcacaagcgcttatcatgataagcacttatg 41407234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 41880695 - 41880642
Alignment:
Q  215 tcctgtttggataaactacttattttgcagcttataggataagcatttatcatg 268  Q
    |||||||||||||||| ||||| |||||||||||||| | ||||  ||||||||    
T  41880695 tcctgtttggataaacaacttactttgcagcttatagcacaagcgcttatcatg 41880642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 466
Target Start/End: Original strand, 44810061 - 44810163
Alignment:
Q  364 agcttgtagcttatttttacgaacttatagcgnnnnnnnataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaatc 463  Q
    ||||| |||||||||||||| | ||| |||||       |||||||||||  ||||||||| |  ||| ||| ||||||||||||||||||| ||||| |    
T  44810061 agcttatagcttatttttactagcttttagcgttttttaataagctaattcaagtagcttatatgttaccattttttatctcaattttacccttgtaacc 44810160  T
Q  464 tta 466  Q
    |||    
T  44810161 tta 44810163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 273
Target Start/End: Complemental strand, 31517928 - 31517872
Alignment:
Q  217 ctgtttggataaactacttattttgcagcttataggataagcatttatcatgataag 273  Q
    |||||||||||||   |||| |||||||||||||| |||||||||||||||||||||    
T  31517928 ctgtttggataaatagcttaatttgcagcttatagcataagcatttatcatgataag 31517872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 216 - 271
Target Start/End: Complemental strand, 35058948 - 35058893
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgata 271  Q
    |||||||||||||||  ||||||||||| ||||||| ||||||| |||||||||||    
T  35058948 cctgtttggataaacagcttattttgcaacttatagcataagcacttatcatgata 35058893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 273
Target Start/End: Complemental strand, 27820536 - 27820475
Alignment:
Q  211 tagatcctgtttggataaactacttattttgcagcttataggataagcatttatcatgataag 273  Q
    |||| ||||||||||||||| |||||||| ||||||||||| ||||||  |||||||||||||    
T  27820536 tagaccctgtttggataaacaacttattt-gcagcttatagcataagcgcttatcatgataag 27820475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 218 - 270
Target Start/End: Original strand, 48064189 - 48064241
Alignment:
Q  218 tgtttggataaactacttattttgcagcttataggataagcatttatcatgat 270  Q
    ||||||||||||| ||||| |||||||||||||| ||||||  ||||||||||    
T  48064189 tgtttggataaacaacttaatttgcagcttatagcataagcccttatcatgat 48064241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 37841877 - 37841933
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataag 273  Q
    ||||||||| ||||| ||||| ||||||||| |||| ||||||| |||||||||||||    
T  37841877 cctgtttgg-taaacaacttaatttgcagctaatagcataagcacttatcatgataag 37841933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 218 - 273
Target Start/End: Complemental strand, 2833520 - 2833465
Alignment:
Q  218 tgtttggataaactacttattttgcagcttataggataagcatttatcatgataag 273  Q
    |||||||||||||| ||||||||||||||||||| |||||   |||||||||||||    
T  2833520 tgtttggataaactgcttattttgcagcttatagcataagtgcttatcatgataag 2833465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 273
Target Start/End: Original strand, 2840239 - 2840294
Alignment:
Q  218 tgtttggataaactacttattttgcagcttataggataagcatttatcatgataag 273  Q
    |||||| |||||| |||||||||||||||||||| |||||   |||||||||||||    
T  2840239 tgtttgtataaacaacttattttgcagcttatagcataagtgcttatcatgataag 2840294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 273
Target Start/End: Original strand, 2844926 - 2844981
Alignment:
Q  218 tgtttggataaactacttattttgcagcttataggataagcatttatcatgataag 273  Q
    |||||| |||||| |||||||||||||||||||| |||||   |||||||||||||    
T  2844926 tgtttgtataaacaacttattttgcagcttatagcataagtgcttatcatgataag 2844981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 218 - 281
Target Start/End: Complemental strand, 14956494 - 14956432
Alignment:
Q  218 tgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    ||||||||||||| |||||||| ||||||||||| | || |  |||||||||||||||||||||    
T  14956494 tgtttggataaacaacttattt-gcagcttatagcacaatcgcttatcatgataagcacttatg 14956432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 280
Target Start/End: Original strand, 41589583 - 41589625
Alignment:
Q  238 tttgcagcttataggataagcatttatcatgataagcacttat 280  Q
    |||||||||||||| | |||||||||||||||||||| |||||    
T  41589583 tttgcagcttatagcacaagcatttatcatgataagcgcttat 41589625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 257
Target Start/End: Complemental strand, 31751748 - 31751707
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataag 257  Q
    ||||||||||||||| ||||| |||||||||||||| |||||    
T  31751748 cctgtttggataaacaacttaatttgcagcttatagtataag 31751707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 403 - 466
Target Start/End: Complemental strand, 87320 - 87257
Alignment:
Q  403 ataagctaatttgagtagcttaaagcttaacatcttttatctcaattttacccatgtaatctta 466  Q
    |||||||||||  |||||||||||||||||||   |||||||||||||||||| | ||||||||    
T  87320 ataagctaattcaagtagcttaaagcttaacaatatttatctcaattttacccctctaatctta 87257  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 274
Target Start/End: Original strand, 7612336 - 7612395
Alignment:
Q  215 tcctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagc 274  Q
    ||||||||  |||||| ||||| |||||||||||||| ||||||| ||||||||||||||    
T  7612336 tcctgtttcaataaacaacttaatttgcagcttatagcataagcacttatcatgataagc 7612395  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 216 - 281
Target Start/End: Original strand, 33672957 - 33673021
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    ||||||||||||||||| |||||| ||||||||||| | ||| |||||| ||||||||| ||||||    
T  33672957 cctgtttggataaactatttattt-gcagcttatagcacaagtatttattatgataagcgcttatg 33673021  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 426013 - 425971
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagc 258  Q
    ||||||||||||||  |||||||||||||||||||| ||||||    
T  426013 cctgtttggataaataacttattttgcagcttatagcataagc 425971  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 280
Target Start/End: Original strand, 21619307 - 21619349
Alignment:
Q  238 tttgcagcttataggataagcatttatcatgataagcacttat 280  Q
    |||||||||||||| | ||||| ||||||||||||||||||||    
T  21619307 tttgcagcttatagcacaagcacttatcatgataagcacttat 21619349  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 239 - 281
Target Start/End: Complemental strand, 44777151 - 44777109
Alignment:
Q  239 ttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    ||||||||||||| |||||  ||||||||||||||||||||||    
T  44777151 ttgcagcttatagcataagtgtttatcatgataagcacttatg 44777109  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 281
Target Start/End: Original strand, 28900760 - 28900820
Alignment:
Q  220 tttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    ||||||||||| |||||||| ||||||||||  | |||||||||| ||||||||| ||||||    
T  28900760 tttggataaacaacttattt-gcagcttataacacaagcatttattatgataagcgcttatg 28900820  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 281
Target Start/End: Complemental strand, 21568828 - 21568765
Alignment:
Q  217 ctgtttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    ||||||||||||||  ||| ||| ||||||||||| |||||   |||||||||||||||||||||    
T  21568828 ctgtttggataaacagcttgttt-gcagcttatagcataagtgcttatcatgataagcacttatg 21568765  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 41668292 - 41668244
Alignment:
Q  210 ctagatcctgtttggataaactacttattttgcagcttataggataagc 258  Q
    |||||||||||||||||||||  |||||||||||||  |||| ||||||    
T  41668292 ctagatcctgtttggataaacagcttattttgcagccgatagcataagc 41668244  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 210 - 258
Target Start/End: Complemental strand, 41668970 - 41668922
Alignment:
Q  210 ctagatcctgtttggataaactacttattttgcagcttataggataagc 258  Q
    |||||||||||||||||||||  |||||||||||||  |||| ||||||    
T  41668970 ctagatcctgtttggataaacagcttattttgcagccgatagcataagc 41668922  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 216 - 258
Target Start/End: Complemental strand, 7946065 - 7946023
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagc 258  Q
    ||||||||||||||| |||||||||| ||||||||| ||||||    
T  7946065 cctgtttggataaacaacttattttgtagcttatagcataagc 7946023  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 281
Target Start/End: Original strand, 847941 - 848001
Alignment:
Q  220 tttggataaactacttattttgcagcttataggataagcatttatcatgataagcacttatg 281  Q
    ||||||||||| |||| |||||||||||||| || ||||| ||||||| |||||| ||||||    
T  847941 tttggataaacaactt-ttttgcagcttataagacaagcagttatcataataagcgcttatg 848001  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 216 - 273
Target Start/End: Original strand, 35069431 - 35069487
Alignment:
Q  216 cctgtttggataaactacttattttgcagcttataggataagcatttatcatgataag 273  Q
    ||||||| ||||||| |||||||| ||||||||||| | |||| ||||||||||||||    
T  35069431 cctgttttgataaacaacttattt-gcagcttatagcacaagcgtttatcatgataag 35069487  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 220 - 276
Target Start/End: Original strand, 33890664 - 33890719
Alignment:
Q  220 tttggataaactacttattttgcagcttataggataagcatttatcatgataagcac 276  Q
    ||||||||||  |||||||||||||||||||| |||| || ||||||| ||||||||    
T  33890664 tttggataaataacttattttgcagcttatagcataaacacttatcat-ataagcac 33890719  T

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