View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17718_low_6 (Length: 411)
Name: NF17718_low_6
Description: NF17718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17718_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 341; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 19 - 394
Target Start/End: Complemental strand, 34090877 - 34090508
Alignment:
| Q |
19 |
tcatcacaacttagaagaaaacaactagttaagcaaaaaataactagaaaaacaatggagggtgttgtggttcagaatggagaacaagtattactaggac |
118 |
Q |
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| T |
34090877 |
tcatcacaacttagaagaaaacaactagttaagcaaaaaataactagaaaaacaatggagggtgttgtggttcagaatggagaacaagtattaccaggac |
34090778 |
T |
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| Q |
119 |
gatcatgggctaataaccaattcacaaggtatgaatatgaaaacaatcaaggaaattggatggaacaaatgagaggttccttaatggtggtagccacagt |
218 |
Q |
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| T |
34090777 |
gatcatgggctaataaccaattcacaaggtatgaa------aacaatcaaggaaattggatggaacaaatgagaggttccttaatggtggtagccacagt |
34090684 |
T |
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| Q |
219 |
tactgcatccttaactttccaaattgcaataaacccaccagggggtgtttggcaatcaaacacagatactcaaaacgggtgtgcacctgatcaagcatgc |
318 |
Q |
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| T |
34090683 |
tattgcatccttaactttccaaattgcaataaacccaccagggggtgtttggcaatcaaacacagatactcaaaacgggtgtgcacctgatcaaacatgc |
34090584 |
T |
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| Q |
319 |
aaagctggtacttcagttttagcctttggtgatagcaatcagaagattagatatgaactgtttttactgttgtgta |
394 |
Q |
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| T |
34090583 |
aaagctggtacttcagttttagcctttggtgatagcaatcagaagattagatatgaactgtttttactgttgtgta |
34090508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 67 - 278
Target Start/End: Complemental strand, 34093774 - 34093569
Alignment:
| Q |
67 |
aaaacaatggagggtgttgtggttcagaatggagaacaagtattactaggacgatcatgggctaataaccaattcacaaggtatgaatatgaaaacaatc |
166 |
Q |
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| T |
34093774 |
aaaacaatggagggtgttgtggttcagaatggaacacaagtattaccaggatcatcatgggctaataaccaattcacaag------atacgaaaaagatc |
34093681 |
T |
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| Q |
167 |
aaggaaattggatggaacaaatgagaggttccttaatggtggtagccacagttactgcatccttaactttccaaattgcaataaacccaccagggggtgt |
266 |
Q |
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|||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34093680 |
aaggaaataggatggaacaaatgagaggttccctaatggtggtagccacagttatggcatccttaactttccaaattgcaataaacccaccaggaggtgt |
34093581 |
T |
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| Q |
267 |
ttggcaatcaaa |
278 |
Q |
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| T |
34093580 |
ttggcaatcaaa |
34093569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 298 - 386
Target Start/End: Complemental strand, 34096878 - 34096790
Alignment:
| Q |
298 |
tgtgcacctgatcaagcatgcaaagctggtacttcagttttagcctttggtgatagcaatcagaagattagatatgaactgtttttact |
386 |
Q |
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| T |
34096878 |
tgtgcacatgatcaaatatgcaaagctagtactttagttttagcatttggtgatagcaaccaaaaatttagatatgaactttttatact |
34096790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 394
Target Start/End: Complemental strand, 34093553 - 34093481
Alignment:
| Q |
322 |
gctggtacttcagttttagcctttggtgatagcaatcagaagattagatatgaactgtttttactgttgtgta |
394 |
Q |
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|||||||||||||||||||| | ||||||| ||| ||| ||| ||||||||||| ||||| ||||||| |||| |
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| T |
34093553 |
gctggtacttcagttttagcatctggtgatggcactcaaaagcttagatatgaaatgtttatactgttatgta |
34093481 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 356
Target Start/End: Complemental strand, 34092710 - 34092660
Alignment:
| Q |
306 |
tgatcaagcatgcaaagctggtacttcagttttagcctttggtgatagcaa |
356 |
Q |
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||||||| ||||||||||||||||| |||| |||| |||||||||||||| |
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| T |
34092710 |
tgatcaaatatgcaaagctggtactttagttctagcatttggtgatagcaa |
34092660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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