View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17718_low_8 (Length: 378)
Name: NF17718_low_8
Description: NF17718
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17718_low_8 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 35 - 378
Target Start/End: Original strand, 35047824 - 35048167
Alignment:
| Q |
35 |
acaaataacaactcaagcgattctccttacactaactactctaagaagttttttctcttcatgaatcaaataatagacagaaatttgagtagtgagactc |
134 |
Q |
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| T |
35047824 |
acaaataacaactcaaacaattttccttacactaactactctaagaagttttttctcttcatggatcaaataatagacataaatttgagtagtgaaactc |
35047923 |
T |
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| Q |
135 |
acatttagttgaaaatgatgaccattcttagacatccataaaggtctcaactccaaactggaagtactcgagactataccctgaggtaacgcttcacttc |
234 |
Q |
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| T |
35047924 |
acatttagttgaaaatgatgaccattcttagacatccataaaggtctcaactccaaactggaagtactcgagactataccctgaggtaacgcttcacttc |
35048023 |
T |
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| Q |
235 |
cactaggcctgcactgcttctactaaacaagataaacagatataagcaccaaacctaaacatccaaaataatacatgatcaagagacagaaccaaaagta |
334 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35048024 |
cactaggcctgcactgcttctactaaacaagataaacagatataagcaccaaacctaaacatccaaaataatacatgatcaagagacagaaccaaaagta |
35048123 |
T |
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| Q |
335 |
ttaagagaaaacaaaccctgtatttatcataagtatgcacattc |
378 |
Q |
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| T |
35048124 |
ttaagagaaaacaaaccctgcatttatcataagtgtgcacattc |
35048167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 7 - 36
Target Start/End: Original strand, 29110264 - 29110293
Alignment:
| Q |
7 |
gaagcataggcacagaattcgcaggacaac |
36 |
Q |
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| T |
29110264 |
gaagcataggcacagaattcgcaggacaac |
29110293 |
T |
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