View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17719_high_2 (Length: 445)

Name: NF17719_high_2
Description: NF17719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17719_high_2
NF17719_high_2
[»] chr3 (47 HSPs)
chr3 (17-436)||(6520238-6520657)
chr3 (28-436)||(6480058-6480463)
chr3 (34-436)||(6448863-6449262)
chr3 (28-434)||(6735550-6735941)
chr3 (28-434)||(6554516-6554907)
chr3 (17-434)||(8454191-8454605)
chr3 (154-422)||(8589400-8589668)
chr3 (153-436)||(6946939-6947222)
chr3 (155-420)||(8569037-8569302)
chr3 (158-375)||(7587550-7587767)
chr3 (17-117)||(8589278-8589378)
chr3 (228-432)||(6591408-6591609)
chr3 (149-421)||(4389031-4389303)
chr3 (149-376)||(8471230-8471457)
chr3 (154-365)||(6916800-6917011)
chr3 (156-423)||(6722155-6722422)
chr3 (28-109)||(6946835-6946916)
chr3 (34-110)||(5280232-5280308)
chr3 (62-110)||(6591727-6591775)
chr3 (149-327)||(6168585-6168763)
chr3 (62-112)||(6916708-6916758)
chr3 (305-433)||(7749852-7749977)
chr3 (305-422)||(5267881-5267998)
chr3 (42-108)||(5298305-5298371)
chr3 (190-271)||(5298441-5298522)
chr3 (65-110)||(6265301-6265346)
chr3 (233-421)||(6142064-6142252)
chr3 (71-111)||(6795000-6795040)
chr3 (229-433)||(6882278-6882482)
chr3 (238-356)||(6245070-6245188)
chr3 (190-264)||(6899823-6899897)
chr3 (63-108)||(6141894-6141939)
chr3 (238-362)||(6258979-6259103)
chr3 (233-273)||(6839143-6839183)
chr3 (62-102)||(7749609-7749649)
chr3 (75-111)||(8471171-8471207)
chr3 (236-271)||(6265472-6265507)
chr3 (62-109)||(6722454-6722501)
chr3 (76-111)||(6882125-6882160)
chr3 (75-110)||(7587476-7587511)
chr3 (30-108)||(5267618-5267696)
chr3 (164-269)||(5280359-5280464)
chr3 (61-110)||(6899694-6899743)
chr3 (238-327)||(13270716-13270805)
chr3 (76-108)||(5249780-5249812)
chr3 (62-110)||(6244900-6244948)
chr3 (62-110)||(6258809-6258857)
[»] scaffold0425 (1 HSPs)
scaffold0425 (28-434)||(7555-7946)
[»] chr7 (1 HSPs)
chr7 (149-375)||(6573432-6573658)
[»] chr4 (1 HSPs)
chr4 (58-106)||(25242529-25242577)
[»] chr1 (1 HSPs)
chr1 (238-363)||(35140493-35140618)


Alignment Details
Target: chr3 (Bit Score: 320; Significance: 1e-180; HSPs: 47)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 17 - 436
Target Start/End: Complemental strand, 6520657 - 6520238
Alignment:
Q  17 ctttcaacgagaccttccaccctaacaccctctatttgcatataaaattctcttgacactgattttgctaaatcattgacaagatcatgcatgacatagt 116  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6520657 ctttcaacgagaccttccaccctaacaccctctatttgcatacaaaattctcttgacactgattttgctaaatcattgacaagatcatgcatgacatagt 6520558  T
Q  117 gctcataagtagtaccatctatttcataaaacgatttttggaaaaatgaaattgactcaagattaccgaaaatttcattaccaaaatcttcttcactttt 216  Q
     ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  6520557 cctcataagtagtaccttttatttcataaaacgatttttggaaaaatgaaattgactcaagatcaccgaaaatttcattaccaaaatcttcttcactttt 6520458  T
Q  217 ttccgatctgtaacacttcaacaaaccttctgccatccaaagcctgatcaattcatcttttttaaatttgtaacccttggtaaaaatcgaacaataggca 316  Q
     ||| ||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||| |||||| |||||||| |||    
T  6520457 gtccaatccgtaacacttcaacaaaccttctgccatccaaagcttgatcaatttatcttttttaaatttataacccttgggaaaaatagaacaatatgca 6520358  T
Q  317 aagcaacgctttagttcggaagagagattatggtaactcaatctcagtaccgagttaatggtgtggtccccatctgatagacgccacatatcagtctcca 416  Q
    || ||||||||||| | ||||| ||||||||||||||||||||||| ||| ||||||||||||||||| |  ||||||| ||||||||||||||||||||    
T  6520357 aaacaacgctttagattggaagggagattatggtaactcaatctcaatactgagttaatggtgtggtctctgtctgataaacgccacatatcagtctcca 6520258  T
Q  417 atatctgcatccattcatct 436  Q
    |||||| |||||||||||||    
T  6520257 atatctccatccattcatct 6520238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 28 - 436
Target Start/End: Complemental strand, 6480463 - 6480058
Alignment:
Q  28 accttccaccctaacaccctctatttgcatataaaattctcttgacactgattttgctaaatcattgacaagatcatgcatgacatagtgctcataagta 127  Q
    ||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||| |||    
T  6480463 accttccaccctagcaccctctatttgcatacaaaattctcctgacactgattttgctaaatcattgacaagattatacatgacatagtgctcatatgta 6480364  T
Q  128 gtaccatctatttcataaaacgatttttggaaaaatgaaattgactcaagattaccgaaaatttcattaccaaaatcttcttcacttttttccgatctgt 227  Q
       |||| | ||| || ||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |  |||| |     
T  6480363 ---ccatatgttttatcaaatgattgttggaaaaatgaaattgactcaagatcaccgaaaatttcattaccaaactcttcttcacttttgtatgatccgc 6480267  T
Q  228 aacacttcaacaaaccttctgccatccaaagcctgatcaattcatcttttttaaatttgtaacccttggtaaaaatcgaacaataggcaaagcaacgctt 327  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| | ||||||||||  ||||| |||||  ||||||||||||||||    
T  6480266 aacacttcaacaaaccttctgccatccaaagcttgatcaattcatctttttcaaatgtataacccttggggaaaatggaacagaaggcaaagcaacgctt 6480167  T
Q  328 tagttcggaagagagattatggtaactcaatctcagtaccgagttaatggtgtggtccccatctgatagacgccacatatcagtctccaatatctgcatc 427  Q
    | | ||||||| |||||| ||||||||||||||||| || |  |||||  ||| |||| | ||||||| |||||||||||||||||||||||||| ||||    
T  6480166 ttgatcggaagggagattgtggtaactcaatctcagcactggattaattttgttgtccacgtctgataaacgccacatatcagtctccaatatcttcatc 6480067  T
Q  428 cattcatct 436  Q
    |||||||||    
T  6480066 cattcatct 6480058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 34 - 436
Target Start/End: Complemental strand, 6449262 - 6448863
Alignment:
Q  34 caccctaacaccctctatttgcatataaaattctcttgacactgattttgctaaatcattgacaagatcatgcatgacatagtgctcataagtagtacca 133  Q
    |||| |||||||||||||||||||| ||||||||| |||||||||||||| ||||||||| |||||||||||||||||||||| |||||| |||   |||    
T  6449262 caccttaacaccctctatttgcatacaaaattctcctgacactgattttgttaaatcattcacaagatcatgcatgacatagtactcatatgta---cca 6449166  T
Q  134 tctatttcataaaacgatttttggaaaaatgaaattgactcaagattaccgaaaatttcattaccaaaatcttcttcacttttttccgatctgtaacact 233  Q
      |||||||| ||| |||| |||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||| || |||| | ||||||    
T  6449165 aatatttcatcaaatgattgttggaaaaatgaaattgactcaagatcacagaaaatttcattaccaaactcttcttcacttttgtctgatccgcaacact 6449066  T
Q  234 tcaacaaaccttctgccatccaaagcctgatcaattcatcttttttaaatttgtaacccttggtaaaaatcgaacaataggcaaagcaacgctttagttc 333  Q
    |||||| ||||||||||||||||||| ||||||||||||| ||||||||| | |||||||| |  ||||| || |||||||||||||||| ||||||       
T  6449065 tcaacataccttctgccatccaaagcttgatcaattcatcctttttaaatctataacccttagggaaaatggagcaataggcaaagcaacactttagact 6448966  T
Q  334 ggaagagagattatggtaactcaatctcagtaccgagttaatggtgtggtccccatctgatagacgccacatatcagtctccaatatctgcatccattca 433  Q
    ||||| ||||||||||||||||||||||||||| ||||||||||  ||||| |  ||||||| |||||||||||||||||||||||||| ||||||||||    
T  6448965 ggaagggagattatggtaactcaatctcagtactgagttaatggaatggtctctgtctgataaacgccacatatcagtctccaatatcttcatccattca 6448866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 28 - 434
Target Start/End: Original strand, 6735550 - 6735941
Alignment:
Q  28 accttccaccctaacaccctctatttgcatataaaattctcttgacactgattttgctaaatcattgacaagatcatgcatgacatagtgctcataagta 127  Q
    ||||||||||||| ||||||||||||||| | ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |    
T  6735550 accttccaccctagcaccctctatttgcaaacaaaattctcctgacactgattttgttaaatcattgacaagatcatgcatgacatagtgctcatatgga 6735649  T
Q  128 gtaccatctatttcataaaacgatttttggaaaaatgaaattgactcaagattaccgaaaatttcattaccaaaatcttcttcacttttttccgatctgt 227  Q
                   | ||| |||| |||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||| || |||| |     
T  6735650 ---------------tcaaatgattgttggaaaaatgaaattgactcaagatcaccgaaaatttcattgccaaactcttcttcacttttgtctgatccgc 6735734  T
Q  228 aacacttcaacaaaccttctgccatccaaagcctgatcaattcatcttttttaaatttgtaacccttggtaaaaatcgaacaataggcaaagcaacgctt 327  Q
    ||||||||| |||||||||||||||||||||| |||||||| | |||||||||||| | ||||||||||  ||||| |||||||||||||||||||||||    
T  6735735 aacacttcagcaaaccttctgccatccaaagcttgatcaatacttcttttttaaatctataacccttggggaaaatggaacaataggcaaagcaacgctt 6735834  T
Q  328 tagttcggaagagagattatggtaactcaatctcagtaccgagttaatggtgtggtccccatctgatagacgccacatatcagtctccaatatctgcatc 427  Q
    ||| || || | ||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||  |||    
T  6735835 tagatctgatgggagattatggtaactcaatcttagtactgagttaatgttgtggtccccatctgataaacgccacatatcagtctccaatatcttaatc 6735934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 28 - 434
Target Start/End: Complemental strand, 6554907 - 6554516
Alignment:
Q  28 accttccaccctaacaccctctatttgcatataaaattctcttgacactgattttgctaaatcattgacaagatcatgcatgacatagtgctcataagta 127  Q
    ||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||  ||||| |||||| |||    
T  6554907 accttccaccctagcaccctctatttgcatacaaaattctcctgacactgattttgttaaatcattgacaagatcatgcatgcaatagtcctcatatgta 6554808  T
Q  128 gtaccatctatttcataaaacgatttttggaaaaatgaaattgactcaagattaccgaaaatttcattaccaaaatcttcttcacttttttccgatctgt 227  Q
       |||            || |||   ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| || |||| |     
T  6554807 ---cca------------aatgatcgctggaaaaatgaaattgactcaagatcaccgaaaatttcattaccaaactcttcttcacttttgtctgatccgc 6554723  T
Q  228 aacacttcaacaaaccttctgccatccaaagcctgatcaattcatcttttttaaatttgtaacccttggtaaaaatcgaacaataggcaaagcaacgctt 327  Q
    ||||||||| |||||||||||||||||||||| |||||||| | ||||||| |||| | || |||||||  ||||| |||||||| ||||||||||||||    
T  6554722 aacacttcagcaaaccttctgccatccaaagcttgatcaatacttctttttcaaatctatagcccttggggaaaatggaacaatacgcaaagcaacgctt 6554623  T
Q  328 tagttcggaagagagattatggtaactcaatctcagtaccgagttaatggtgtggtccccatctgatagacgccacatatcagtctccaatatctgcatc 427  Q
    ||| || |||| ||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||  |||    
T  6554622 tagatccgaagggagattatggtaactcaatcttagtactgagttaatgttgtggtccccatctgataaacgccacatatcagtctccaatatcttaatc 6554523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 17 - 434
Target Start/End: Original strand, 8454191 - 8454605
Alignment:
Q  17 ctttcaacgagaccttccaccctaacaccctctatttgcatataaaattctcttgacactgattttgctaaatcattgacaagatcatgcatgacatagt 116  Q
    |||||||||  || |||||| ||| || |||||||||| |||  ||||||||  || |||||||||| ||||||||||||||||||||||||||||||||    
T  8454191 ctttcaacgctacgttccactctagcatcctctatttggatactaaattctccagatactgattttgttaaatcattgacaagatcatgcatgacatagt 8454290  T
Q  117 gctcataagtagtaccatctatttcataaaacgatttttggaaaaatgaaattgactcaagattaccgaaaatttcattaccaaaatcttcttcactttt 216  Q
    ||||||| |||    ||| |||||||| ||| |||| ||||||||| ||||||||| |||||| | ||||| ||||||||||||| |||||||||||| |    
T  8454291 gctcatatgtat---catatatttcatcaaatgattgttggaaaaaagaaattgacacaagatcagcgaaactttcattaccaaactcttcttcacttct 8454387  T
Q  217 ttccgatctgtaacacttcaacaaaccttctgccatccaaagcctgatcaattcatcttttttaaatttgtaacccttggtaaaaatcgaacaataggca 316  Q
     |  |||| | |||||||||||||||||||||||||||||||| |||||| |||||||||||||||||| | |||||||| |||||| |||||||||| |    
T  8454388 gttagatccgcaacacttcaacaaaccttctgccatccaaagcatgatcagttcatcttttttaaatttatgacccttgggaaaaatggaacaataggaa 8454487  T
Q  317 aagcaacgctttagttcggaagagagattatggtaactcaatctcagtaccgagttaatggtgtggtccccatctgatagacgccacatatcagtctcca 416  Q
    |||||||||||||| |  |||| ||||||||||||||||||||||||||| ||||||| | |||| ||  | | ||||| ||||||||||||||||||||    
T  8454488 aagcaacgctttagattagaagggagattatggtaactcaatctcagtactgagttaacgttgtgatctacttttgataaacgccacatatcagtctcca 8454587  T
Q  417 atatctgcatccattcat 434  Q
    |||| |  ||||||||||    
T  8454588 atatattaatccattcat 8454605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 154 - 422
Target Start/End: Original strand, 8589400 - 8589668
Alignment:
Q  154 ttggaaaaatgaaattgactcaagattaccgaaaatttcattaccaaaatcttcttcacttttttccgatctgtaacacttcaacaaaccttctgccatc 253  Q
    |||||||||||||||||||||||||| |||||||||||||||||| || |||||||||||||| |  |||| | |||||||||| |||||||||||||||    
T  8589400 ttggaaaaatgaaattgactcaagatcaccgaaaatttcattacctaactcttcttcacttttgtgtgatccgcaacacttcaataaaccttctgccatc 8589499  T
Q  254 caaagcctgatcaattcatcttttttaaatttgtaacccttggtaaaaatcgaacaataggcaaagcaacgctttagttcggaagagagattatggtaac 353  Q
    || ||| ||||||||||| |||||| |||||  |||||||||| |||||| |||||||| | ||||||| |||||||   ||||| ||||||||||||||    
T  8589500 cagagcttgatcaattcacctttttcaaattcataacccttgggaaaaatggaacaataagaaaagcaatgctttagaatggaagggagattatggtaac 8589599  T
Q  354 tcaatctcagtaccgagttaatggtgtggtccccatctgatagacgccacatatcagtctccaatatct 422  Q
    | |||||||| || ||||| ||| |||| ||||||||||||| ||||||||||| ||||||||||||||    
T  8589600 ttaatctcagaactgagtttatgctgtgttccccatctgataaacgccacatattagtctccaatatct 8589668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 153 - 436
Target Start/End: Original strand, 6946939 - 6947222
Alignment:
Q  153 tttggaaaaatgaaattgactcaagattaccgaaaatttcattaccaaaatcttcttcacttttttccgatctgtaacacttcaacaaaccttctgccat 252  Q
    |||||||||| |||||||||||||||| || ||||||||||||||| || |||||||||||||| ||   |||| |||||||||||||||||||||||||    
T  6946939 tttggaaaaacgaaattgactcaagatcactgaaaatttcattacctaactcttcttcacttttgtctcttctgcaacacttcaacaaaccttctgccat 6947038  T
Q  253 ccaaagcctgatcaattcatcttttttaaatttgtaacccttggtaaaaatcgaacaataggcaaagcaacgctttagttcggaagagagattatggtaa 352  Q
    ||||||| |||||||||||||||||| |||| | |||||||||| |||||| || ||||||||||| ||||||||  | | |||||  ||||| ||||||    
T  6947039 ccaaagcttgatcaattcatctttttcaaatgtataacccttgggaaaaatggagcaataggcaaaacaacgcttccgattggaaggaagattgtggtaa 6947138  T
Q  353 ctcaatctcagtaccgagttaatggtgtggtccccatctgatagacgccacatatcagtctccaatatctgcatccattcatct 436  Q
    ||||||||||| || |  |||||  ||| |||||| ||| |||  |||||||||||||||||||||||||||||||||||||||    
T  6947139 ctcaatctcagcactggattaattttgttgtccccgtctaataatcgccacatatcagtctccaatatctgcatccattcatct 6947222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 155 - 420
Target Start/End: Complemental strand, 8569302 - 8569037
Alignment:
Q  155 tggaaaaatgaaattgactcaagattaccgaaaatttcattaccaaaatcttcttcacttttttccgatctgtaacacttcaacaaaccttctgccatcc 254  Q
    |||||||||||||| ||||| |||| | |||| |  |||||||| |  |||||||||||||| ||   | || |||||||||||||||||||||||||||    
T  8569302 tggaaaaatgaaatggactccagatcatcgaagaactcattacccagctcttcttcacttttgtctcttttgcaacacttcaacaaaccttctgccatcc 8569203  T
Q  255 aaagcctgatcaattcatcttttttaaatttgtaacccttggtaaaaatcgaacaataggcaaagcaacgctttagttcggaagagagattatggtaact 354  Q
    ||||| |||||||||||||||||| |||||  |||||||||| |||||| |||||||||||||| |||||||| || | ||||| |||||||||||||||    
T  8569202 aaagcttgatcaattcatctttttcaaattcataacccttgggaaaaattgaacaataggcaaaacaacgcttgagattggaagggagattatggtaact 8569103  T
Q  355 caatctcagtaccgagttaatggtgtggtccccatctgatagacgccacatatcagtctccaatat 420  Q
    |||||||| ||| | ||||||    | ||| || |  |||| | ||||||||||||||||||||||    
T  8569102 caatctcaatactgggttaatttcatcgtcacccttcgataaatgccacatatcagtctccaatat 8569037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 158 - 375
Target Start/End: Original strand, 7587550 - 7587767
Alignment:
Q  158 aaaaatgaaattgactcaagattaccgaaaatttcattaccaaaatcttcttcacttttttccgatctgtaacacttcaacaaaccttctgccatccaaa 257  Q
    ||||||||||| ||||| |||| | | || | ||||||||| || |||||||||||||| ||   || | |||| |||| ||||||||||||||||||||    
T  7587550 aaaaatgaaatggactctagatcatccaagaattcattacccaactcttcttcacttttgtctcttccgcaacatttcagcaaaccttctgccatccaaa 7587649  T
Q  258 gcctgatcaattcatcttttttaaatttgtaacccttggtaaaaatcgaacaataggcaaagcaacgctttagttcggaagagagattatggtaactcaa 357  Q
    || |||||||||||||||||| ||||   |||||||||| ||| || |||||| ||||||| ||||||||||| | ||| | ||||||||||||||||||    
T  7587650 gcttgatcaattcatctttttcaaatacataacccttgggaaatattgaacaaaaggcaaaacaacgctttagattggatgggagattatggtaactcaa 7587749  T
Q  358 tctcagtaccgagttaat 375  Q
    ||||| ||| ||||||||    
T  7587750 tctcaatactgagttaat 7587767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 17 - 117
Target Start/End: Original strand, 8589278 - 8589378
Alignment:
Q  17 ctttcaacgagaccttccaccctaacaccctctatttgcatataaaattctcttgacactgattttgctaaatcattgacaagatcatgcatgacatagt 116  Q
    ||||||| || ||||||||||||  |||| |||||||||| | ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||    
T  8589278 ctttcaaagataccttccaccctggcaccttctatttgcacacaaaattctcctgacactgattttgctaaatcattgacaagatcatgcatggcatagt 8589377  T
Q  117 g 117  Q
    |    
T  8589378 g 8589378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 228 - 432
Target Start/End: Complemental strand, 6591609 - 6591408
Alignment:
Q  228 aacacttcaacaaaccttctgccatccaaagcctgatcaattcatcttttttaaatttgtaacccttggtaaaaatcgaacaataggcaaagcaacgctt 327  Q
    ||||||| | ||| |||||||||||||||||| |||| |||||| | || | ||| |  || ||||||| ||| || |||||||| ||||| ||||||||    
T  6591609 aacactttagcaagccttctgccatccaaagcttgattaattcacccttctcaaactcatagcccttgggaaatatagaacaataagcaaaacaacgctt 6591510  T
Q  328 tagttcggaagagagattatggtaactcaatctcagtaccgagttaatggtgtggtccccatctgatagacgccacatatcagtctccaatatctgcatc 427  Q
     || | ||| | ||| ||| ||||||||||||||||||| | ||||||| |||   | |||||||||| | |||||||||||||||||||||||| ||||    
T  6591509 cagattggatgggaggttaaggtaactcaatctcagtacggggttaatgctgt---caccatctgataaatgccacatatcagtctccaatatcttcatc 6591413  T
Q  428 cattc 432  Q
    |||||    
T  6591412 cattc 6591408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 149 - 421
Target Start/End: Complemental strand, 4389303 - 4389031
Alignment:
Q  149 gatttttggaaaaatgaaattgactcaagattaccgaaaatttcattaccaaaatcttcttcacttttttccgatctgtaacacttcaacaaaccttctg 248  Q
    ||||| ||||||||||||||||| || |||| | | || |  |||||||| || |||||||||||||| ||   || | |||||||||||||||| || |    
T  4389303 gatttctggaaaaatgaaattgattctagatcaacaaataactcattacccaactcttcttcacttttgtcacttccgcaacacttcaacaaaccatccg 4389204  T
Q  249 ccatccaaagcctgatcaattcatcttttttaaatttgtaacccttggtaaaaatcgaacaataggcaaagcaacgctttagttcggaagagagattatg 348  Q
    | ||||||||| |||| ||||||   || | |||  ||| ||| |||| ||| || |||||||| | ||| ||||| || ||   ||||| ||||| |||    
T  4389203 ctatccaaagcttgattaattcacgcttgtcaaaaatgtgacctttgggaaatatggaacaataagaaaaacaacgtttaagaatggaagggagatgatg 4389104  T
Q  349 gtaactcaatctcagtaccgagttaatggtgtggtccccatctgatagacgccacatatcagtctccaatatc 421  Q
    |||||||||||||||||| || |||||| | | ||| || ||||||| | |||||||||| ||||||||||||    
T  4389103 gtaactcaatctcagtactgaattaatgttattgtcaccttctgataaatgccacatatcggtctccaatatc 4389031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 149 - 376
Target Start/End: Original strand, 8471230 - 8471457
Alignment:
Q  149 gatttttggaaaaatgaaattgactcaagattaccgaaaatttcattaccaaaatcttcttcacttttttccgatctgtaacacttcaacaaaccttctg 248  Q
    |||| ||||| ||||||||| |||||||||| | | || | ||||||||| || ||||| |||||||| ||   |||| |||| |||| |||||||||||    
T  8471230 gattgttggagaaatgaaatggactcaagatcatcaaagaattcattacccaactcttcctcacttttgtctcttctgcaacatttcagcaaaccttctg 8471329  T
Q  249 ccatccaaagcctgatcaattcatcttttttaaatttgtaacccttggtaaaaatcgaacaataggcaaagcaacgctttagttcggaagagagattatg 348  Q
    ||||||||||| |||||||||||||  | | ||| |   ||||||| | ||| || || || |||||||| || ||||| || |  |||| ||| |||||    
T  8471330 ccatccaaagcttgatcaattcatccctgtcaaactcaaaacccttaggaaatatagagcagtaggcaaaacagcgcttcagattagaagggaggttatg 8471429  T
Q  349 gtaactcaatctcagtaccgagttaatg 376  Q
    |||||||||||||| | |||||||||||    
T  8471430 gtaactcaatctcaatgccgagttaatg 8471457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 154 - 365
Target Start/End: Original strand, 6916800 - 6917011
Alignment:
Q  154 ttggaaaaatgaaattgactcaagattaccgaaaatttcattaccaaaatcttcttcacttttttccgatctgtaacacttcaacaaaccttctgccatc 253  Q
    |||||||||||| |||||| | |||| |  ||||| ||||||||| || |||||||||||||| ||   ||   ||||||||| ||||||||||||||||    
T  6916800 ttggaaaaatgatattgacactagatcattgaaaaattcattacccaactcttcttcacttttgtctcttccacaacacttcagcaaaccttctgccatc 6916899  T
Q  254 caaagcctgatcaattcatcttttttaaatttgtaacccttggtaaaaatcgaacaataggcaaagcaacgctttagttcggaagagagattatggtaac 353  Q
    |||||| |||| |||||| | || | ||| |  || ||||||| ||| || ||||| || ||||| ||| |||| || |  |||||||||||| ||||||    
T  6916900 caaagcttgattaattcacccttctcaaactcatagcccttgggaaatatggaacagtaagcaaaacaatgcttcagatttgaagagagattaaggtaac 6916999  T
Q  354 tcaatctcagta 365  Q
    ||| ||||||||    
T  6917000 tcattctcagta 6917011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 156 - 423
Target Start/End: Complemental strand, 6722422 - 6722155
Alignment:
Q  156 ggaaaaatgaaattgactcaagattaccgaaaatttcattaccaaaatcttcttcacttttttccgatctgtaacacttcaacaaaccttctgccatcca 255  Q
    |||||||||| |||||| | |||| | | || | ||||||||| || |||| ||||||||| ||   || | |||||||||||||| |||||| ||||||    
T  6722422 ggaaaaatgatattgacactagatgatcaaagaattcattacccaactcttgttcacttttgtctcttccgcaacacttcaacaaatcttctgtcatcca 6722323  T
Q  256 aagcctgatcaattcatcttttttaaatttgtaacccttggtaaaaatcgaacaataggcaaagcaacgctttagttcggaagagagattatggtaactc 355  Q
    |||| | || | ||||   || | ||| |  || ||||||| ||| || |||||||| ||||| |||||||| || ||||||| ||| |||  | |||||    
T  6722322 aagcttaattagttcactcttctcaaactcatagcccttgggaaatatagaacaataagcaaaacaacgcttcagatcggaagggaggttaaagaaactc 6722223  T
Q  356 aatctcagtaccgagttaatggtgtggtccccatctgatagacgccacatatcagtctccaatatctg 423  Q
    ||||| ||||| | ||||||| |||  || || ||||||| || ||||| ||||||||||||||||||    
T  6722222 aatcttagtacggggttaatgttgttctcaccctctgataaacaccacaaatcagtctccaatatctg 6722155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 28 - 109
Target Start/End: Original strand, 6946835 - 6946916
Alignment:
Q  28 accttccaccctaacaccctctatttgcatataaaattctcttgacactgattttgctaaatcattgacaagatcatgcatg 109  Q
    |||||||||| || |||| | ||||||| || ||||||||| |||||||||||| | |||||||||||||||||||||||||    
T  6946835 accttccaccatagcaccttttatttgcttacaaaattctcctgacactgatttggataaatcattgacaagatcatgcatg 6946916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 34 - 110
Target Start/End: Original strand, 5280232 - 5280308
Alignment:
Q  34 caccctaacaccctctatttgcatataaaattctcttgacactgattttgctaaatcattgacaagatcatgcatga 110  Q
    ||||||| ||||||||||| | | | ||||||||| |||||||||| ||||||||||| ||||||||||||||||||    
T  5280232 caccctatcaccctctattcgtaaagaaaattctcctgacactgatcttgctaaatcaatgacaagatcatgcatga 5280308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 62 - 110
Target Start/End: Complemental strand, 6591775 - 6591727
Alignment:
Q  62 aattctcttgacactgattttgctaaatcattgacaagatcatgcatga 110  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  6591775 aattctcctgacactgattttgctaaatcattgacaagatcatgcatga 6591727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 149 - 327
Target Start/End: Original strand, 6168585 - 6168763
Alignment:
Q  149 gatttttggaaaaatgaaattgactcaagattaccgaaaatttcattaccaaaatcttcttcacttttttccgatctgtaacacttcaacaaaccttctg 248  Q
    |||| |||||||||||| |||||| | |||| | | || | ||||||||| || ||||||||| |||| ||   || | ||||||| | |||||||| ||    
T  6168585 gattgttggaaaaatgacattgacactagatgatcaaagaattcattacccaactcttcttcatttttgtcttttccgcaacactttagcaaaccttgtg 6168684  T
Q  249 ccatccaaagcctgatcaattcatcttttttaaatttgtaacccttggtaaaaatcgaacaataggcaaagcaacgctt 327  Q
    ||||||||||| |||| ||| |||| |||| ||| || |||||||||| ||| || |||||||| ||||| ||| ||||    
T  6168685 ccatccaaagcttgattaatccatccttttcaaacttataacccttgggaaatatagaacaatatgcaaaacaatgctt 6168763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 62 - 112
Target Start/End: Original strand, 6916708 - 6916758
Alignment:
Q  62 aattctcttgacactgattttgctaaatcattgacaagatcatgcatgaca 112  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||    
T  6916708 aattctcccgacactgattttgctaaatcattgacaagatcatgcatgaca 6916758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 305 - 433
Target Start/End: Original strand, 7749852 - 7749977
Alignment:
Q  305 gaacaataggcaaagcaacgctttagttcggaagagagattatggtaactcaatctcagtaccgagttaatggtgtggtccccatctgatagacgccaca 404  Q
    |||||||| ||||| |||||||| || | ||||| ||| ||| ||||| ||||||||||||  | ||||||| |||   |||| ||||||| ||||||||    
T  7749852 gaacaataagcaaaacaacgcttcagattggaagggaggttaaggtaattcaatctcagtatggggttaatgttgt---ccccgtctgataaacgccaca 7749948  T
Q  405 tatcagtctccaatatctgcatccattca 433  Q
    |||||||||||||||| |  |||||||||    
T  7749949 tatcagtctccaatattttaatccattca 7749977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 305 - 422
Target Start/End: Original strand, 5267881 - 5267998
Alignment:
Q  305 gaacaataggcaaagcaacgctttagttcggaagagagattatggtaactcaatctcagtaccgagttaatggtgtggtccccatctgatagacgccaca 404  Q
    |||||||| | ||| || ||||| || | ||||| ||||| ||||||||||||||||||||| || |||||| |   ||| || ||||||| ||||||||    
T  5267881 gaacaataagaaaaacagcgcttcagattggaagggagatgatggtaactcaatctcagtactgaattaatgttaatgtcaccttctgataaacgccaca 5267980  T
Q  405 tatcagtctccaatatct 422  Q
    |||| |||||||||||||    
T  5267981 tatctgtctccaatatct 5267998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 42 - 108
Target Start/End: Original strand, 5298305 - 5298371
Alignment:
Q  42 caccctctatttgcatataaaattctcttgacactgattttgctaaatcattgacaagatcatgcat 108  Q
    |||||||||||  || | |||||||||  |||||||||||||||||||| |||||||||||||||||    
T  5298305 caccctctattctcaaacaaaattctcccgacactgattttgctaaatcgttgacaagatcatgcat 5298371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 190 - 271
Target Start/End: Original strand, 5298441 - 5298522
Alignment:
Q  190 ttcattaccaaaatcttcttcacttttttccgatctgtaacacttcaacaaaccttctgccatccaaagcctgatcaattca 271  Q
    ||||||||| || ||||||||| |||| ||   |||| | |||||||||||||||||||||||||||||| |||| ||||||    
T  5298441 ttcattacccaactcttcttcagttttatcaattctgcagcacttcaacaaaccttctgccatccaaagcttgattaattca 5298522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 110
Target Start/End: Original strand, 6265301 - 6265346
Alignment:
Q  65 tctcttgacactgattttgctaaatcattgacaagatcatgcatga 110  Q
    |||| |||||||||||| ||||||||||||||||||||||||||||    
T  6265301 tctcctgacactgatttcgctaaatcattgacaagatcatgcatga 6265346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 233 - 421
Target Start/End: Original strand, 6142064 - 6142252
Alignment:
Q  233 ttcaacaaaccttctgccatccaaagcctgatcaattcatcttttttaaatttgtaacccttggtaaaaatcgaacaataggcaaagcaacgctttagtt 332  Q
    ||||| ||||||||||||||||||||| |||| |||||| | || | ||| |  || ||||||| ||| || |||||||| ||||| ||| |||| || |    
T  6142064 ttcaagaaaccttctgccatccaaagcttgattaattcacccttctcaaactcatagcccttgggaaatatagaacaataagcaaaacaatgcttcagat 6142163  T
Q  333 cggaagagagattatggtaactcaatctcagtaccgagttaatggtgtggtccccatctgatagacgccacatatcagtctccaatatc 421  Q
    | |||| |||  || ||||||| | |||||| || || |||||| |   ||| || |||| || |||||||| ||||||||||||||||    
T  6142164 cagaagggaggctaaggtaactgattctcagaacggaattaatgtttccgtcaccctctggtaaacgccacaaatcagtctccaatatc 6142252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 6795040 - 6795000
Alignment:
Q  71 gacactgattttgctaaatcattgacaagatcatgcatgac 111  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  6795040 gacactgattttgccaaatcattgacaagatcatgcatgac 6795000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 229 - 433
Target Start/End: Original strand, 6882278 - 6882482
Alignment:
Q  229 acacttcaacaaaccttctgccatccaaagcctgatcaattcatcttttttaaatttgtaacccttggtaaaaatcgaacaataggcaaagcaacgcttt 328  Q
    ||||||||||||||||||||||||||||||  | || | |||| | || | ||  |  || ||||||| ||| || |||||||| ||||| ||||||||     
T  6882278 acacttcaacaaaccttctgccatccaaagtttaattagttcacccttctcaagctcatagcccttgggaaatatagaacaataagcaaaacaacgcttc 6882377  T
Q  329 agttcggaagagagattatggtaactcaatctcagtaccgagttaatggtgtggtccccatctgatagacgccacatatcagtctccaatatctgcatcc 428  Q
    || | ||||| |||  || |||||||||||||||||| | ||||||||  |   || || || | || |||||||| |||||||||||||| ||  ||||    
T  6882378 agattggaagggaggataaggtaactcaatctcagtaacaagttaatgtagatttcaccctcgggtaaacgccacaaatcagtctccaataccttaatcc 6882477  T
Q  429 attca 433  Q
    |||||    
T  6882478 attca 6882482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 356
Target Start/End: Original strand, 6245070 - 6245188
Alignment:
Q  238 caaaccttctgccatccaaagcctgatcaattcatcttttttaaatttgtaacccttggtaaaaatcgaacaataggcaaagcaacgctttagttcggaa 337  Q
    |||||||||||||||||||||  |||| ||| |||| |||| ||| |  |||||||||| ||| || |||||||| ||||| ||| |||| || | ||||    
T  6245070 caaaccttctgccatccaaagtttgattaatccatccttttcaaactcataacccttgggaaatatagaacaataagcaaaacaatgcttcagattggaa 6245169  T
Q  338 gagagattatggtaactca 356  Q
    | ||| ||| |||||||||    
T  6245170 gggaggttaaggtaactca 6245188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 190 - 264
Target Start/End: Original strand, 6899823 - 6899897
Alignment:
Q  190 ttcattaccaaaatcttcttcacttttttccgatctgtaacacttcaacaaaccttctgccatccaaagcctgat 264  Q
    ||||||||| || |||||||||||||| ||   || | ||||||||| |||||||||||||||||||||| ||||    
T  6899823 ttcattacccaactcttcttcacttttgtctcttccgcaacacttcagcaaaccttctgccatccaaagcttgat 6899897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 108
Target Start/End: Original strand, 6141894 - 6141939
Alignment:
Q  63 attctcttgacactgattttgctaaatcattgacaagatcatgcat 108  Q
    ||||||||| || |||||| ||||||||||||||||||||||||||    
T  6141894 attctcttgtcaatgatttcgctaaatcattgacaagatcatgcat 6141939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 238 - 362
Target Start/End: Original strand, 6258979 - 6259103
Alignment:
Q  238 caaaccttctgccatccaaagcctgatcaattcatcttttttaaatttgtaacccttggtaaaaatcgaacaataggcaaagcaacgctttagttcggaa 337  Q
    |||||||| ||||||||||||| |||| |||||| | |||| ||| |  |||||||||| ||| || |||||||| ||||| ||| |||| || | ||||    
T  6258979 caaaccttttgccatccaaagcttgattaattcacccttttcaaactcataacccttgggaaatatagaacaataagcaaaacaatgcttcagattggaa 6259078  T
Q  338 gagagattatggtaactcaatctca 362  Q
    | |||  || ||||||||| |||||    
T  6259079 gggaggctaaggtaactcattctca 6259103  T

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Target: chr3; HSP #34
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 6839183 - 6839143
Alignment:
Q  233 ttcaacaaaccttctgccatccaaagcctgatcaattcatc 273  Q
    |||| |||||||||||||||||||||| |||||||||||||    
T  6839183 ttcagcaaaccttctgccatccaaagcttgatcaattcatc 6839143  T

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Target: chr3; HSP #35
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 102
Target Start/End: Original strand, 7749609 - 7749649
Alignment:
Q  62 aattctcttgacactgattttgctaaatcattgacaagatc 102  Q
    |||||||  ||||||||||||||||||||||||||||||||    
T  7749609 aattctcccgacactgattttgctaaatcattgacaagatc 7749649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 75 - 111
Target Start/End: Original strand, 8471171 - 8471207
Alignment:
Q  75 ctgattttgctaaatcattgacaagatcatgcatgac 111  Q
    |||||||||| ||||||||||||||||||||||||||    
T  8471171 ctgattttgccaaatcattgacaagatcatgcatgac 8471207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 271
Target Start/End: Original strand, 6265472 - 6265507
Alignment:
Q  236 aacaaaccttctgccatccaaagcctgatcaattca 271  Q
    ||||||||||||||||||||||||||||| ||||||    
T  6265472 aacaaaccttctgccatccaaagcctgattaattca 6265507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 109
Target Start/End: Complemental strand, 6722501 - 6722454
Alignment:
Q  62 aattctcttgacactgattttgctaaatcattgacaagatcatgcatg 109  Q
    ||||||| ||||||||| || ||||||||||| |||||||||||||||    
T  6722501 aattctcctgacactgaattggctaaatcattaacaagatcatgcatg 6722454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 76 - 111
Target Start/End: Original strand, 6882125 - 6882160
Alignment:
Q  76 tgattttgctaaatcattgacaagatcatgcatgac 111  Q
    |||||| |||||||||||||||||||||||||||||    
T  6882125 tgatttcgctaaatcattgacaagatcatgcatgac 6882160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 110
Target Start/End: Original strand, 7587476 - 7587511
Alignment:
Q  75 ctgattttgctaaatcattgacaagatcatgcatga 110  Q
    |||||||||| |||||||||||||||||||||||||    
T  7587476 ctgattttgccaaatcattgacaagatcatgcatga 7587511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 30 - 108
Target Start/End: Original strand, 5267618 - 5267696
Alignment:
Q  30 cttccaccctaacaccctctatttgcatataaaattctcttgacactgattttgctaaatcattgacaagatcatgcat 108  Q
    ||||||||||| |||| |||||| |||   ||||||||| || || ||||| |||||||||||||| |||||| |||||    
T  5267618 cttccaccctatcaccttctattcgcaagcaaaattctcctgccattgattgtgctaaatcattgataagatcgtgcat 5267696  T

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Target: chr3; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 269
Target Start/End: Original strand, 5280359 - 5280464
Alignment:
Q  164 gaaattgactcaagattaccgaaaatttcattaccaaaatcttcttcacttttttccgatctgtaacacttcaacaaaccttctgccatccaaagcctga 263  Q
    |||||||||||||||| | | |||| ||||| ||| || |||| |||||| ||||| | |||  |||| |||| ||| || ||||||||||||||| |||    
T  5280359 gaaattgactcaagataatcaaaaaattcatcacccaactctttttcactcttttctgctctaaaacatttcagcaacccatctgccatccaaagcttga 5280458  T
Q  264 tcaatt 269  Q
    | ||||    
T  5280459 ttaatt 5280464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 110
Target Start/End: Original strand, 6899694 - 6899743
Alignment:
Q  61 aaattctcttgacactgattttgctaaatcattgacaagatcatgcatga 110  Q
    |||||||| ||||||| |||| ||||||||||  ||||||||||||||||    
T  6899694 aaattctcctgacactaatttcgctaaatcatatacaagatcatgcatga 6899743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 327
Target Start/End: Complemental strand, 13270805 - 13270716
Alignment:
Q  238 caaaccttctgccatccaaagcctgatcaattcatcttttttaaatttgtaacccttggtaaaaatcgaacaataggcaaagcaacgctt 327  Q
    |||||||| ||||||||||||| |||| ||| |||| |||| ||| |  |||||||||| ||| || |||||||| ||||| ||| ||||    
T  13270805 caaaccttgtgccatccaaagcttgattaatccatccttttcaaactcataacccttgggaaatatagaacaatatgcaaaacaatgctt 13270716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 76 - 108
Target Start/End: Original strand, 5249780 - 5249812
Alignment:
Q  76 tgattttgctaaatcattgacaagatcatgcat 108  Q
    ||||||||||||||| |||||||||||||||||    
T  5249780 tgattttgctaaatcgttgacaagatcatgcat 5249812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 6244900 - 6244948
Alignment:
Q  62 aattctcttgacactgattttgctaaatcattgacaagatcatgcatga 110  Q
    ||||||| ||||| |||| | |||||||||| |||||||||||||||||    
T  6244900 aattctcctgacattgatgtcgctaaatcatggacaagatcatgcatga 6244948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 62 - 110
Target Start/End: Original strand, 6258809 - 6258857
Alignment:
Q  62 aattctcttgacactgattttgctaaatcattgacaagatcatgcatga 110  Q
    ||||||| ||||| |||| | ||||||||||||| ||||||||||||||    
T  6258809 aattctcctgacattgatgtcgctaaatcattgataagatcatgcatga 6258857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0425 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: scaffold0425
Description:

Target: scaffold0425; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 28 - 434
Target Start/End: Complemental strand, 7946 - 7555
Alignment:
Q  28 accttccaccctaacaccctctatttgcatataaaattctcttgacactgattttgctaaatcattgacaagatcatgcatgacatagtgctcataagta 127  Q
    ||||||||||||| ||||||||||||||| | ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |    
T  7946 accttccaccctagcaccctctatttgcaaacaaaattctcctgacactgattttgttaaatcattgacaagatcatgcatgacatagtgctcatatgga 7847  T
Q  128 gtaccatctatttcataaaacgatttttggaaaaatgaaattgactcaagattaccgaaaatttcattaccaaaatcttcttcacttttttccgatctgt 227  Q
                   | ||| |||| |||||||||||||||||||||||||| ||||||||||||||| ||||| |||||||||||||| || |||| |     
T  7846 ---------------tcaaatgattgttggaaaaatgaaattgactcaagatcaccgaaaatttcattgccaaactcttcttcacttttgtctgatccgc 7762  T
Q  228 aacacttcaacaaaccttctgccatccaaagcctgatcaattcatcttttttaaatttgtaacccttggtaaaaatcgaacaataggcaaagcaacgctt 327  Q
    ||||||||| |||||||||| ||||||||||| |||||||| | ||||||| |||| | || ||||||| |||||| |||||||||| |||||||||| |    
T  7761 aacacttcagcaaaccttctcccatccaaagcttgatcaatacttctttttcaaatctatagcccttgggaaaaatggaacaataggaaaagcaacgcct 7662  T
Q  328 tagttcggaagagagattatggtaactcaatctcagtaccgagttaatggtgtggtccccatctgatagacgccacatatcagtctccaatatctgcatc 427  Q
    ||| || |||| ||||||||||||||||||||||||||| |||||||||||||| ||||| ||||||| ||||||||| || |||||||||||||  |||    
T  7661 tagatcagaagggagattatggtaactcaatctcagtactgagttaatggtgtgatccccgtctgataaacgccacatgtcggtctccaatatcttaatc 7562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 6e-44; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 149 - 375
Target Start/End: Complemental strand, 6573658 - 6573432
Alignment:
Q  149 gatttttggaaaaatgaaattgactcaagattaccgaaaatttcattaccaaaatcttcttcacttttttccgatctgtaacacttcaacaaaccttctg 248  Q
    |||| ||||||||||||||| ||||| |||| | | || | ||||||||| || |||| ||||||||| ||   || | |||| |||| ||||||||| |    
T  6573658 gattgttggaaaaatgaaatggactctagatcatccaagaattcattacccaactcttgttcacttttgtctcttccgcaacatttcagcaaaccttcag 6573559  T
Q  249 ccatccaaagcctgatcaattcatcttttttaaatttgtaacccttggtaaaaatcgaacaataggcaaagcaacgctttagttcggaagagagattatg 348  Q
    ||||||||||  |||||||||||||||||| |||||| |||||||||| ||| || |||||||| ||||| ||||||||||| | ||||| |||||||||    
T  6573558 ccatccaaaggttgatcaattcatctttttcaaatttataacccttgggaaatatggaacaatatgcaaaacaacgctttagattggaagggagattatg 6573459  T
Q  349 gtaactcaatctcagtaccgagttaat 375  Q
     ||||||||||||| ||||||||||||    
T  6573458 ataactcaatctcaataccgagttaat 6573432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 58 - 106
Target Start/End: Complemental strand, 25242577 - 25242529
Alignment:
Q  58 ataaaattctcttgacactgattttgctaaatcattgacaagatcatgc 106  Q
    |||||||||||  ||||||||||||||||||||||||||||||||||||    
T  25242577 ataaaattctcccgacactgattttgctaaatcattgacaagatcatgc 25242529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 363
Target Start/End: Complemental strand, 35140618 - 35140493
Alignment:
Q  238 caaaccttctgccatccaaagcctgatcaattcatcttttttaaatttgtaacccttggtaaaaatcgaacaataggcaaagcaacgctttagttcggaa 337  Q
    ||||||||||| |||||||||| |||| ||| |||| |||| ||| |  |||||||||| ||| || ||| |||| ||||| ||| |||| || | ||||    
T  35140618 caaaccttctgtcatccaaagcttgattaatccatcattttcaaactcataacccttgggaaatatagaataatatgcaaaacaatgcttcagattggaa 35140519  T
Q  338 gagagattatggtaactcaatctcag 363  Q
    | |||  || ||||||||| ||||||    
T  35140518 gggaggctaaggtaactcattctcag 35140493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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