View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17719_high_5 (Length: 352)
Name: NF17719_high_5
Description: NF17719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17719_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 140 - 338
Target Start/End: Original strand, 40213300 - 40213498
Alignment:
| Q |
140 |
gtttggactctggaatatatttacatgagctgataaatatctctattagtacatcttcaattcaatcatatcagattctagttatcaaagtcttgtgagt |
239 |
Q |
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| T |
40213300 |
gtttggactctggaatatatttacatgagctgaaaaatatctctattagtacatcttcaattcaat-ataacagattctagttatcaaagtcttgtgagt |
40213398 |
T |
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| Q |
240 |
ttcaccaattgacaaataccatatcaattctaaataatatttacgtttccctcggatct-aagttgaactaaaaataaataattccgctgtcttgttgtt |
338 |
Q |
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| T |
40213399 |
ttcaccaattgacaaataccatatcaattctaaataatatttacgtttccctcggatctaaagttgaactaaaaataaataattccgctgtcttgttgtt |
40213498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 40213138 - 40213269
Alignment:
| Q |
1 |
tcaaaaataaataaatcacacttaaatgatgttatatacctatttaaatgtttcgaatatcaactacataatctatcaaaatagagtttctctcatacat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40213138 |
tcaaaaataaataaatcacacttaaatgatgttata--cctatttaaatgtttcgaatatcaactacataatctatcaaaatagagtttctctcatacat |
40213235 |
T |
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| Q |
101 |
gtcatgcaattatctatgatacttctcttttcaa |
134 |
Q |
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| T |
40213236 |
gtcatgcaattatctatgatacttctcttttcaa |
40213269 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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