View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17719_low_10 (Length: 258)
Name: NF17719_low_10
Description: NF17719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17719_low_10 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 20)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 245
Target Start/End: Complemental strand, 6520260 - 6520016
Alignment:
| Q |
1 |
ccaatatctgcatccattcatctcgagaaaacttttttcgcaaaagttggcccaatgattttatagctaaaggcaacccaccacacttgtccactatttt |
100 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
6520260 |
ccaatatctccatccattcatcttgagaaaacttttttcgcaaaagttggcccaatgattttatagctaaaggcaacccaccacacttgtccactatttt |
6520161 |
T |
|
| Q |
101 |
cctgccaatcgattcaagttttggatagtcacacacacgcatgccttgaaaagcatgtgtctcaaataaactccaacaattgcttttgtccaattgatgt |
200 |
Q |
| |
|
| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6520160 |
catgccaatcgtttcaagttttggatagtcacacacacgcatgccttgaaaagcatgtgtctcaaataaactccaacaattgcttttgtccaattgatgt |
6520061 |
T |
|
| Q |
201 |
aaatgaattaatttggtggagttcaggacatgatcagctaccttc |
245 |
Q |
| |
|
||||||||||| | ||||||||||||||||||||| ||||||||| |
|
|
| T |
6520060 |
aaatgaattaactcggtggagttcaggacatgatctgctaccttc |
6520016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 6947200 - 6947403
Alignment:
| Q |
1 |
ccaatatctgcatccattcatctcgagaaaacttttttcgcaaaagttggcccaatgattttatagctaaaggcaacccaccacacttgtccactatttt |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6947200 |
ccaatatctgcatccattcatcttgagaaaacttttttcgcaaaagttggcccagtgattttatagctaaaggcaaccctccacacttgtccactatttt |
6947299 |
T |
|
| Q |
101 |
cctgccaatcgattcaagttttggatagtcacacacacgcatgccttgaaaagcatgtgtctcaaataaactccaacaattgcttttgtccaattgatgt |
200 |
Q |
| |
|
||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | | |||||| ||| |
|
|
| T |
6947300 |
cctcccaattgattcaagttttggatcgtcacacacacgcatgccttgaaaagcatgtgtctcaaataaactccaacaatggcttgttttcaattgttgt |
6947399 |
T |
|
| Q |
201 |
aaat |
204 |
Q |
| |
|
|||| |
|
|
| T |
6947400 |
aaat |
6947403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 6480080 - 6479847
Alignment:
| Q |
1 |
ccaatatctgcatccattcatctcgagaaaacttttttcgcaaaagttggcccaatgattttatagctaaaggcaacccaccacacttgtccactatttt |
100 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
6480080 |
ccaatatcttcatccattcatcttgagaaaactttttccgcaaaagttggcccaatgatattatagctaaaggcaacccttcacacttgtccattatttt |
6479981 |
T |
|
| Q |
101 |
cctgccaatcgattcaagttttggatagtcacacacacgcatgccttgaaaagcatgtgtctcaaataaactccaacaattgcttttgtccaattgatgt |
200 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| | |||||||||||||||| ||| ||||||| |||||||||| |||||| |||||||| || |
|
|
| T |
6479980 |
cctgccaattgattcaagttttggatagtcacacacactcttgccttgaaaagcatgagtcacaaataatctccaacaatcacttttgaccaattgacgt |
6479881 |
T |
|
| Q |
201 |
aaatgaattaatttggtggagttcaggacatgat |
234 |
Q |
| |
|
| || | ||| ||||||| |||| |||||||| |
|
|
| T |
6479880 |
agatcacataacatggtggatttcacgacatgat |
6479847 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 6448885 - 6448661
Alignment:
| Q |
1 |
ccaatatctgcatccattcatctcgagaaaacttttttcgcaaaagttggcccaatgattttatagctaaaggcaacccaccacacttgtccactatttt |
100 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||| |||||| ||||||||| |||||||||||||||||||||||| |||||| ||| || |||||| |
|
|
| T |
6448885 |
ccaatatcttcatccattcatcttgagaaaactttttccgcaaatgttggcccagtgattttatagctaaaggcaaccctccacacatgttcaatatttt |
6448786 |
T |
|
| Q |
101 |
cctgccaatcgattcaagttttggatagtcacacacacgcatgccttgaaaagcatgtgtctcaaataaactccaacaattgcttttgtccaattgatgt |
200 |
Q |
| |
|
||| ||||| |||||||| ||||||| |||||||||| | | || ||||||||||||||| ||| ||||||||||||||||||||||||||||| ||| |
|
|
| T |
6448785 |
cctaccaattgattcaagaattggatattcacacacactctttccatgaaaagcatgtgtcaaaaacaaactccaacaattgcttttgtccaattggtgt |
6448686 |
T |
|
| Q |
201 |
aaatgaattaatttggtggagttca |
225 |
Q |
| |
|
|||| || ||| |||||||| |||| |
|
|
| T |
6448685 |
aaatcaaataacttggtggatttca |
6448661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 8589660 - 8589902
Alignment:
| Q |
1 |
ccaatatctgcatccattcatctcgagaaaacttttttcgcaaaagttggcccaatgattttatagctaaaggcaacccaccacacttgtccactatttt |
100 |
Q |
| |
|
||||||||| ||||| |||| | ||||||| ||| ||||||| |||||||||| |||||||| ||||||||||||||| |||||||| |||| |||||| |
|
|
| T |
8589660 |
ccaatatcttaatccactcatgttgagaaaaatttcttcgcaagagttggcccattgattttacagctaaaggcaaccctccacacttatccagtatttt |
8589759 |
T |
|
| Q |
101 |
cctgccaatcgattcaagttttggatagtcacacacacgcatgccttgaaaagcatgtgtctcaaataaactccaacaattgcttttgtccaattgatgt |
200 |
Q |
| |
|
| ||||| | |||||||| |||||||| ||||||||| | | |||||||||||||||||| |||||||||||||||||| ||||||||||||||| ||| |
|
|
| T |
8589760 |
cttgccagttgattcaagatttggatattcacacacattctttccttgaaaagcatgtgtcacaaataaactccaacaatcgcttttgtccaattgttgt |
8589859 |
T |
|
| Q |
201 |
aaatgaattaatttggtggagttcaggacatgatcagctacct |
243 |
Q |
| |
|
|||| || ||| |||||||| || || ||||||| ||||||| |
|
|
| T |
8589860 |
aaatcaaataacttggtggatttaagaacatgatatgctacct |
8589902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 12 - 204
Target Start/End: Original strand, 8454596 - 8454788
Alignment:
| Q |
12 |
atccattcatctcgagaaaacttttttcgcaaaagttggcccaatgattttatagctaaaggcaacccaccacacttgtccactattttcctgccaatcg |
111 |
Q |
| |
|
|||||||||| | |||||| |||| |||| |||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| || |||| | |
|
|
| T |
8454596 |
atccattcatgttcagaaaatgttttccgcagaagttggcccaatgattttatagctaaaggcaaccctccacacttttccactatttttctaccaactg |
8454695 |
T |
|
| Q |
112 |
attcaagttttggatagtcacacacacgcatgccttgaaaagcatgtgtctcaaataaactccaacaattgcttttgtccaattgatgtaaat |
204 |
Q |
| |
|
||||||| |||||||| ||| |||||| | | |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
8454696 |
attcaagatttggatattcagacacactctttccttgaaaagcatgtgtcacaaataaactccaacaattgcttttgtccaattgttgtaaat |
8454788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 6554536 - 6554320
Alignment:
| Q |
1 |
ccaatatctgcatccattcatctcgagaaaacttttttcgcaaaagttggcccaatgattttatagctaaaggcaacccaccacacttgtccactatttt |
100 |
Q |
| |
|
||||||||| |||||||||| | ||||| ||||| ||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
6554536 |
ccaatatcttaatccattcatgttcagaaatttttttatgcagaagttgtgccaatgattttatagctaaaggcaaccctccacacttgtccactatttt |
6554437 |
T |
|
| Q |
101 |
cctgccaatcgattcaagttttggatagtcacacacacgcatgccttgaaaagcatgtgtctcaaataaactccaacaattgcttttgtccaattgatgt |
200 |
Q |
| |
|
||| ||||| | |||||| |||||||| |||||||||| | |||||||||||||||||| ||||||| ||||||||||||||||| |||||||| ||| |
|
|
| T |
6554436 |
cctcccaattgtttcaagatttggatattcacacacactttttccttgaaaagcatgtgtcacaaataatctccaacaattgcttttttccaattgttgt |
6554337 |
T |
|
| Q |
201 |
aaatgaattaatttggt |
217 |
Q |
| |
|
|||| || ||||||||| |
|
|
| T |
6554336 |
aaatcaaataatttggt |
6554320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 6735921 - 6736133
Alignment:
| Q |
1 |
ccaatatctgcatccattcatctcgagaaaacttttttcgcaaaagttggcccaatgattttatagctaaaggcaacccaccacacttgtccactatttt |
100 |
Q |
| |
|
||||||||| |||||||||| | ||||| ||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||| ||||||||||| |
|
|
| T |
6735921 |
ccaatatcttaatccattcatgttcagaaagttttttacgcaaaagttggcccaatgattttatagctagaggcaaccctccacacttctccactatttt |
6736020 |
T |
|
| Q |
101 |
cctgccaatcgattcaagttttggatagtcacacacacgcatgccttgaaaagcatgtgtctcaaataaactccaacaattgcttttgtccaattgatgt |
200 |
Q |
| |
|
| | ||||| |||||||| |||||||| ||||| |||| | |||||||| ||||||||| ||||||| ||||||||||||||||| |||||||| ||| |
|
|
| T |
6736021 |
cttcccaattgattcaagatttggatattcacaaacactttttccttgaaacgcatgtgtcacaaataatctccaacaattgcttttttccaattgttgt |
6736120 |
T |
|
| Q |
201 |
aaatgaattaatt |
213 |
Q |
| |
|
|||| || ||||| |
|
|
| T |
6736121 |
aaatcaaataatt |
6736133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 14 - 180
Target Start/End: Complemental strand, 8569030 - 8568864
Alignment:
| Q |
14 |
ccattcatctcgagaaaacttttttcgcaaaagttggcccaatgattttatagctaaaggcaacccaccacacttgtccactattttcctgccaatcgat |
113 |
Q |
| |
|
||||||| || ||||||| ||| || |||| || | ||||||| ||| | ||||||||||||||| |||||||| || || || ||| | ||||||||| |
|
|
| T |
8569030 |
ccattcaccttgagaaaattttctttgcaagagattccccaatgttttcacagctaaaggcaaccctccacacttttctacaatcttctttccaatcgat |
8568931 |
T |
|
| Q |
114 |
tcaagttttggatagtcacacacacgcatgccttgaaaagcatgtgtctcaaataaactccaacaat |
180 |
Q |
| |
|
||||| |||||||| ||| ||||| | | ||||||||||||||| || |||||||||||||||||| |
|
|
| T |
8568930 |
tcaagatttggatattcaaacacattctttccttgaaaagcatgtttcacaaataaactccaacaat |
8568864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 51 - 176
Target Start/End: Original strand, 6265700 - 6265825
Alignment:
| Q |
51 |
cccaatgattttatagctaaaggcaacccaccacacttgtccactattttcctgccaatcgattcaagttttggatagtcacacacacgcatgccttgaa |
150 |
Q |
| |
|
||||||| ||| | || |||||||||||| ||||| || | ||||||||| |||||||| ||||||| |||||||| ||| ||||| | ||||||||| |
|
|
| T |
6265700 |
cccaatgttttcagagttaaaggcaaccccccacattttgctactattttcttgccaatcaattcaagatttggatattcaaacacattcttgccttgaa |
6265799 |
T |
|
| Q |
151 |
aagcatgtgtctcaaataaactccaa |
176 |
Q |
| |
|
|||||| | || |||||||||||||| |
|
|
| T |
6265800 |
aagcatatctcacaaataaactccaa |
6265825 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 176
Target Start/End: Original strand, 6882528 - 6882638
Alignment:
| Q |
66 |
gctaaaggcaacccaccacacttgtccactattttcctgccaatcgattcaagttttggatagtcacacacacgcatgccttgaaaagcatgtgtctcaa |
165 |
Q |
| |
|
|||||||||||||| |||||||| || ||||||||| |||| ||| ||||||| |||||||| ||| | ||| | | ||||||||||||| | || ||| |
|
|
| T |
6882528 |
gctaaaggcaaccccccacacttttctactattttcttgcctatcaattcaagatttggatattcaaatacattcctaccttgaaaagcatatctcacaa |
6882627 |
T |
|
| Q |
166 |
ataaactccaa |
176 |
Q |
| |
|
||||||||||| |
|
|
| T |
6882628 |
ataaactccaa |
6882638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 176
Target Start/End: Original strand, 6168900 - 6169025
Alignment:
| Q |
51 |
cccaatgattttatagctaaaggcaacccaccacacttgtccactattttcctgccaatcgattcaagttttggatagtcacacacacgcatgccttgaa |
150 |
Q |
| |
|
||||||| ||||| ||| |||||| |||| ||||| || || ||||||||| | |||||||||||||| |||||||| ||| ||| | | |||||| || |
|
|
| T |
6168900 |
cccaatgtttttagagcaaaaggcgaccccccacatttttctactattttcataccaatcgattcaagatttggatattcaaacatattcctgccttcaa |
6168999 |
T |
|
| Q |
151 |
aagcatgtgtctcaaataaactccaa |
176 |
Q |
| |
|
|||||||| | |||||||||||||| |
|
|
| T |
6169000 |
aagcatgtcttacaaataaactccaa |
6169025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 51 - 176
Target Start/End: Original strand, 6245296 - 6245421
Alignment:
| Q |
51 |
cccaatgattttatagctaaaggcaacccaccacacttgtccactattttcctgccaatcgattcaagttttggatagtcacacacacgcatgccttgaa |
150 |
Q |
| |
|
||||||| ||| | |||||||||| |||| ||||| || || ||||||||| | |||||||||||||| |||||||| ||| ||| | | |||||| || |
|
|
| T |
6245296 |
cccaatgttttcagagctaaaggcgaccccccacatttttctactattttcataccaatcgattcaagatttggatattcaaacatattcctgccttcaa |
6245395 |
T |
|
| Q |
151 |
aagcatgtgtctcaaataaactccaa |
176 |
Q |
| |
|
|||||||| | |||||||||||||| |
|
|
| T |
6245396 |
aagcatgtcttacaaataaactccaa |
6245421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 33 - 176
Target Start/End: Complemental strand, 6591394 - 6591251
Alignment:
| Q |
33 |
ttttttcgcaaaagttggcccaatgattttatagctaaaggcaacccaccacacttgtccactattttcctgccaatcgattcaagttttggatagtcac |
132 |
Q |
| |
|
|||||| |||||||||| |||| || ||||| ||||||||| | ||| |||||||| || ||||||||| |||| ||| || |||| ||||||| ||| |
|
|
| T |
6591394 |
tttttttgcaaaagttgccccattgtttttagagctaaaggaatccccccacacttttctactattttcttgcctatcaatacaagagttggatattcaa |
6591295 |
T |
|
| Q |
133 |
acacacgcatgccttgaaaagcatgtgtctcaaataaactccaa |
176 |
Q |
| |
|
||||| | | ||| ||||||||| | || |||||||||||||| |
|
|
| T |
6591294 |
acacatccctacctcgaaaagcatatctcacaaataaactccaa |
6591251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 176
Target Start/End: Original strand, 6142295 - 6142420
Alignment:
| Q |
51 |
cccaatgattttatagctaaaggcaacccaccacacttgtccactattttcctgccaatcgattcaagttttggatagtcacacacacgcatgccttgaa |
150 |
Q |
| |
|
||||||| ||| | |||||| |||||||| |||||||| || ||||||||| |||| ||| ||||||| |||||||| || ||||| | | ||| ||| |
|
|
| T |
6142295 |
cccaatgttttcagagctaatggcaaccccccacacttttctactattttcttgcctatcaattcaagatttggatatccaaacacattcctacctggaa |
6142394 |
T |
|
| Q |
151 |
aagcatgtgtctcaaataaactccaa |
176 |
Q |
| |
|
|||||| | || |||||||||||||| |
|
|
| T |
6142395 |
aagcatatctcacaaataaactccaa |
6142420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 176
Target Start/End: Original strand, 6259208 - 6259333
Alignment:
| Q |
51 |
cccaatgattttatagctaaaggcaacccaccacacttgtccactattttcctgccaatcgattcaagttttggatagtcacacacacgcatgccttgaa |
150 |
Q |
| |
|
||||||| ||| | |||| |||||||||| ||||| || || ||||||||| |||| ||||||||||| |||||||| ||| ||| | | |||||| || |
|
|
| T |
6259208 |
cccaatgttttcagagctgaaggcaaccccccacatttttctactattttcttgccgatcgattcaagatttggatattcaaacatattcctgccttcaa |
6259307 |
T |
|
| Q |
151 |
aagcatgtgtctcaaataaactccaa |
176 |
Q |
| |
|
|||||||| | |||||||| ||||| |
|
|
| T |
6259308 |
aagcatgtcttacaaataaattccaa |
6259333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 176
Target Start/End: Complemental strand, 13270576 - 13270451
Alignment:
| Q |
51 |
cccaatgattttatagctaaaggcaacccaccacacttgtccactattttcctgccaatcgattcaagttttggatagtcacacacacgcatgccttgaa |
150 |
Q |
| |
|
||||||| ||| | |||||||||||| || ||||| || || |||||| || | || || |||||||| |||||||| ||| ||| | | |||||| || |
|
|
| T |
13270576 |
cccaatgttttcagagctaaaggcaaacccccacatttttctactattctcataccgatggattcaagatttggatattcaaacatattcctgccttcaa |
13270477 |
T |
|
| Q |
151 |
aagcatgtgtctcaaataaactccaa |
176 |
Q |
| |
|
|||||||| || |||||||||||||| |
|
|
| T |
13270476 |
aagcatgtctcacaaataaactccaa |
13270451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 127
Target Start/End: Original strand, 7750008 - 7750084
Alignment:
| Q |
51 |
cccaatgattttatagctaaaggcaacccaccacacttgtccactattttcctgccaatcgattcaagttttggata |
127 |
Q |
| |
|
||||||| || || ||||||||||||||| |||||||| || ||||||||| |||| ||||| || || |||||||| |
|
|
| T |
7750008 |
cccaatgtttctagagctaaaggcaaccccccacacttttctactattttcttgccgatcgactcgagatttggata |
7750084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 132
Target Start/End: Original strand, 5250127 - 5250234
Alignment:
| Q |
25 |
gagaaaacttttttcgcaaaagttggcccaatgattttatagctaaaggcaacccaccacacttgtccactattttcctgccaatcgattcaagttttgg |
124 |
Q |
| |
|
||||||||||| ||||||| || | ||||| | ||||| |||||| |||||||| ||||||||| | | |||||| | ||||| |||||||| ||||| |
|
|
| T |
5250127 |
gagaaaactttcttcgcaagagatttcccaaagtttttacagctaatggcaaccctccacacttgcctataattttcttaccaatagattcaagatttgg |
5250226 |
T |
|
| Q |
125 |
atagtcac |
132 |
Q |
| |
|
||| |||| |
|
|
| T |
5250227 |
atattcac |
5250234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 51 - 124
Target Start/End: Complemental strand, 6838946 - 6838873
Alignment:
| Q |
51 |
cccaatgattttatagctaaaggcaacccaccacacttgtccactattttcctgccaatcgattcaagttttgg |
124 |
Q |
| |
|
||||||| ||| | ||||||||||||||| |||||||| || || || || ||||||| |||||||||||||| |
|
|
| T |
6838946 |
cccaatgttttcacagctaaaggcaaccctccacacttatctacaatctttttgccaattgattcaagttttgg |
6838873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 7575 - 7359
Alignment:
| Q |
1 |
ccaatatctgcatccattcatctcgagaaaacttttttcgcaaaagttggcccaatgattttatagctaaaggcaacccaccacacttgtccactatttt |
100 |
Q |
| |
|
||||||||| |||||||||| | |||||| ||| | |||| |||||| |||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
7575 |
ccaatatcttaatccattcatgttcagaaaattttctacgcagaagttgtgccaatgattttatagctaaaggcaaccctccacacttgtccactatttt |
7476 |
T |
|
| Q |
101 |
cctgccaatcgattcaagttttggatagtcacacacacgcatgccttgaaaagcatgtgtctcaaataaactccaacaattgcttttgtccaattgatgt |
200 |
Q |
| |
|
| | ||||| | |||||| |||||||| |||||||||| | |||||||||||||||||| ||||||| ||||||||||||||||| |||||||| ||| |
|
|
| T |
7475 |
cttcccaattgtttcaagatttggatattcacacacactttttccttgaaaagcatgtgtcacaaataatctccaacaattgcttttttccaattgttgt |
7376 |
T |
|
| Q |
201 |
aaatgaattaatttggt |
217 |
Q |
| |
|
|||| || ||||||||| |
|
|
| T |
7375 |
aaatcaaataatttggt |
7359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 180
Target Start/End: Complemental strand, 6573328 - 6573214
Alignment:
| Q |
66 |
gctaaaggcaacccaccacacttgtccactattttcctgccaatcgattcaagttttggatagtcacacacacgcatgccttgaaaagcatgtgtctcaa |
165 |
Q |
| |
|
|||||||||||||| ||||| ||||| || || | | |||||||||||||||| |||||||||||| ||||| | ||| ||||||||||| || ||| |
|
|
| T |
6573328 |
gctaaaggcaaccctccacatttgtctacaatctccttgccaatcgattcaagatttggatagtcaaacacattttttcctcgaaaagcatgtttcacaa |
6573229 |
T |
|
| Q |
166 |
ataaactccaacaat |
180 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
6573228 |
ataaactccaacaat |
6573214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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