View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17719_low_15 (Length: 222)
Name: NF17719_low_15
Description: NF17719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17719_low_15 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 16 - 204
Target Start/End: Original strand, 28764575 - 28764763
Alignment:
| Q |
16 |
ataatacttcaccagcctgtaagattcaaggttatagtaataatagtaagaattgaagaaatgacacatgaaaagaatgtctattttaacttactaataa |
115 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28764575 |
ataacacttcaccagcctgtaagattcaaggttatagtaacaatactaagaattgaagaaatgacacatgaaaagaatgtctattttaacttactaataa |
28764674 |
T |
|
| Q |
116 |
atatttgctggaaataagggatttaagctttggtaagacttcctttaaatcttcagctccattgatatcaggtagcttatgtgctcctt |
204 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28764675 |
atatttgctggaaataagggatttaagctttggtaagacttcctttaaatcttcagctccattgatatcaggtagcttatgtgctcctt |
28764763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 40 - 201
Target Start/End: Original strand, 28743429 - 28743586
Alignment:
| Q |
40 |
ttcaaggttatagtaataatagtaagaattgaagaaatgacacatgaaaagaatgtctattttaacttactaataaatatttgctggaaataagggattt |
139 |
Q |
| |
|
|||||||||||||||||||| || || ||||||||||||||||||||| |||||||| |||||||| |||||||||||| |||| || |||||||| |
|
|
| T |
28743429 |
ttcaaggttatagtaataatgctatgacttgaagaaatgacacatgaaatgaatgtctcttttaact----aataaatatttgttggatatgagggattt |
28743524 |
T |
|
| Q |
140 |
aagctttggtaagacttcctttaaatcttcagctccattgatatcaggtagcttatgtgctc |
201 |
Q |
| |
|
||||||| ||||| |||| ||||||||||||||||||||| | | ||||||||||||||||| |
|
|
| T |
28743525 |
aagcttttgtaaggcttcatttaaatcttcagctccattggtgttaggtagcttatgtgctc |
28743586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University