View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17719_low_9 (Length: 291)
Name: NF17719_low_9
Description: NF17719
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17719_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 44130502 - 44130232
Alignment:
| Q |
1 |
agggcataaaaaagtagacaccacagttttcatgataattcattcattcttcgatcccacaatagaaaaagggnnnnnnnnnnnnnnnnatagagctatc |
100 |
Q |
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| T |
44130502 |
agggcataaaaaagtagacaccacagttttcatgataattcattcattcttcgatcccacaatagaaaagggggagagagagagaga--atagagctatc |
44130405 |
T |
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| Q |
101 |
aattactagctagtctctttctctttctcagagagagagatgatgatgatgatggcacgaacttccttggatttttcttcagcatttcaactacgacctc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44130404 |
aattactagctagtctctttctctttctcagagagagagatgatgatgatgatggcacgaacttccttggatttttcttcagcatttcaactacgacctc |
44130305 |
T |
|
| Q |
201 |
acccaacaacaatcatcattattccttcaccttccttccctttctctctgaccaatatccctaaccatcatta |
273 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44130304 |
acccaacaacaatcatcattattccttcaccttccttccctttctctctgaccaatatccctaaccatcatta |
44130232 |
T |
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