View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1771_high_15 (Length: 384)
Name: NF1771_high_15
Description: NF1771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1771_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 21122531 - 21122177
Alignment:
| Q |
18 |
cattccgtgcattccaattatagagatgcgatcatcctcaagtgccttcaagagttgatcataagccacttttgttgattcaaaatagatgaagtcttcg |
117 |
Q |
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|||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21122531 |
cattccgtacagtccaattatagagatgcgatcatcctcaagtgccttcaagagtttatcataagccacttttgttgattcaaaatagatgaagtcttcg |
21122432 |
T |
|
| Q |
118 |
gatgactgatactgaatacctggtagtggagcaagatgagaaaatggttcaatatctttgcttttgcctttgaacctccccattgcgtctatcttctgca |
217 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21122431 |
gatgactgatacagaatacctggtagtggagcaagatgagaaaatggttcgatatctttgcttttgcctttgaacctccccattgcgtctatcttctgca |
21122332 |
T |
|
| Q |
218 |
ccatttgtttgcacaaaagatatcgtccacacgttggaaaccatccttggaagcaattgttgtctgtctccgtcctctccacaagaacctccacctctct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |
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| T |
21122331 |
ccatttgtttgcacaaaagatatcgtccacacgttggaaaccatccttggaagcaattgttgtctgtctccgtcctttgtacaagaacctccacctctct |
21122232 |
T |
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| Q |
318 |
caggagattttccacatcaatcaaccacttctccactggtttttcaattacttca |
372 |
Q |
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||||| |||||||||||| ||| ||||||||||||||||||||||||||||||| |
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| T |
21122231 |
aaggagtttttccacatcattcagccacttctccactggtttttcaattacttca |
21122177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 18 - 372
Target Start/End: Complemental strand, 21115104 - 21114750
Alignment:
| Q |
18 |
cattccgtgcattccaattatagagatgcgatcatcctcaagtgccttcaagagttgatcataagccacttttgttgattcaaaatagatgaagtcttcg |
117 |
Q |
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|||||| | |||||| ||||||||||||| |||||||| |||||||| ||| ||||||| |||||||| ||||||||||||||||| ||||| ||||| |
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| T |
21115104 |
cattccatacattcctattatagagatgcaatcatccttaagtgcctccaatagttgattgtaagccacctttgttgattcaaaataaatgaattcttca |
21115005 |
T |
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| Q |
118 |
gatgactgatactgaatacctggtagtggagcaagatgagaaaatggttcaatatctttgcttttgcctttgaacctccccattgcgtctatcttctgca |
217 |
Q |
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||||| ||||| ||||||||||||||||| ||||||||||||||| |||||| ||||||| |||||| | ||||||| || |||||||| || | |
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| T |
21115004 |
aatgaccgatacctgctacctggtagtggagcacgatgagaaaatggttgaatatcaatgcttttacctttgtatttccccatcgcatctatcttttgta |
21114905 |
T |
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| Q |
218 |
ccatttgtttgcacaaaagatatcgtccacacgttggaaaccatccttggaagcaattgttgtctgtctccgtcctctccacaagaacctccacctctct |
317 |
Q |
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||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||| |||||| || ||||| | ||||||||| ||||||||||| |
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| T |
21114904 |
ccatttgcttgcacaaaagataccgtccacacgttggaaaccatccttgaaagcaattggcgtctgtttctgtcctttgcacaagaacatccacctctct |
21114805 |
T |
|
| Q |
318 |
caggagattttccacatcaatcaaccacttctccactggtttttcaattacttca |
372 |
Q |
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|| ||||||||| ||| ||||||||||||||||||||||||||||||||| |||| |
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| T |
21114804 |
caagagattttctacaacaatcaaccacttctccactggtttttcaattatttca |
21114750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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