View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1771_high_2 (Length: 853)
Name: NF1771_high_2
Description: NF1771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1771_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 346 - 837
Target Start/End: Original strand, 32015820 - 32016313
Alignment:
| Q |
346 |
ataatagccaaatgggtacgaaaaggaatgcattatatgtttcgataattattctgtccctcttattttaatttcttatgttcannnnnnnctctacaat |
445 |
Q |
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| T |
32015820 |
ataatagccaaatggatacgaaaaggaatgcattatatgtttcgataattattctgtccctcttattttaatttcttatgttcatttttttctctacaat |
32015919 |
T |
|
| Q |
446 |
tttgtttgatgatcactagatgatcctttaggtgccttaagataaggtttgaaggattctcaatattaagataatagtaaactaacataaatgtcaacca |
545 |
Q |
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| T |
32015920 |
tttgtttgatgatcactagatgatcctttaggtgctttaagataaggtttgaaggattctcaatattaagataatagtaaactaacataaatgtcaacca |
32016019 |
T |
|
| Q |
546 |
acataacaaatggattttttgtccttatatgcattcttggcatttttctaagtcttaattttaaaatgacaatgattagtatacctaatgtttggt-gta |
644 |
Q |
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| T |
32016020 |
acataacaaatggattttttgtccttatatgcattcttggcatttttctaagtcttaattttaaaatgacaatgattagtatacctaatgtttggtatta |
32016119 |
T |
|
| Q |
645 |
ttttgttaggaatatcaattgaaaatctctccattataccacttcacacgtaaatatctca-tttactacaaactaccactagnnnnnnnnaatgtaaat |
743 |
Q |
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| T |
32016120 |
ttttgttaggaatatcaattgaaaatctctccattataccacttcacacgtaaatatctcagtttactacaaactaccactagttttttttaatgtaaat |
32016219 |
T |
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| Q |
744 |
tcatttgtgagtatttttaaattttaaggtattctctaccttaaactttgcatcatcttctcatcttagatttttctatataaaataacattat |
837 |
Q |
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| T |
32016220 |
tcatttgtgagtatttttaaattttaaggtattctctaccttaaactttgcatcatcttctcatcttagatttttctatataaaataacattat |
32016313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 17 - 346
Target Start/End: Original strand, 32013391 - 32013721
Alignment:
| Q |
17 |
cactagagtgcttgtgttttgagtgactacacactgagtggtagttgcttgattaattaataaggatcatattaatcagtgtctcgttaaggaagttaaa |
116 |
Q |
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| T |
32013391 |
cactagagtgcttgtgttttgagtgactacacagtgagtggtagttgcttgattaattaataagggtcatattaatcggtgtcttgttaaggaagttaaa |
32013490 |
T |
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| Q |
117 |
ataataaattttagattgaaatgatatttttaaaatttttgatgcatttac-aatgtccaagactcgttaacattttccaattaatcttctttgtaagtg |
215 |
Q |
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| T |
32013491 |
atagtaaattttaaattgaaatattattttttaaatttttgatgcatttaccaatgtccaagactcgttaacattttccaattaatcttctttgtaagtg |
32013590 |
T |
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| Q |
216 |
gcgacattagacttcactaagctacatttaaggcaatggatattatatgttactatcatgtctagttaaattgacggtgtacttaaacaaggacaataat |
315 |
Q |
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| T |
32013591 |
gcgacattagacttcactaagctacatttaaggcaatggatattgtatgttactatcatgtctagttaaattgactgtgtacttaaacaaggacaataat |
32013690 |
T |
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| Q |
316 |
ttatgatttgttgcaattaattagtctaata |
346 |
Q |
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| T |
32013691 |
ttatgatttgttacaattaattagtctaata |
32013721 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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