View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1771_high_8 (Length: 499)
Name: NF1771_high_8
Description: NF1771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1771_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 441; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 19 - 494
Target Start/End: Complemental strand, 26952797 - 26952321
Alignment:
| Q |
19 |
tcattttctgttcttgtaacagtaaataaagattataccatgacaacattttttaaccaaggaatacaggcttgattgaaaataaaattctgcttttatc |
118 |
Q |
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| T |
26952797 |
tcattttctgttcttgtaacagtaaataaagattataccatgacaacattttttaaccaaggaatacaggcttgattgaaaataaaattatgcttttgtc |
26952698 |
T |
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| Q |
119 |
tcgttattatttatataccttgaacatgatcaagattcaagagaaggaatcatctggttgatttagttatgatgagtttttctttttggtgttagattcg |
218 |
Q |
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| T |
26952697 |
tcgttattatttatataccttgaacatgatcaagattcaagagaaggaatcatctggttgatttagttatgatgagtttttctttttggtgttagattcg |
26952598 |
T |
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| Q |
219 |
agccctgtcgtggcctgctttgctcgttggatgggttgctcagagtgcaaggtgcaaatatgctatttatttcacatatgtgattttctgaagtgagtgg |
318 |
Q |
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| T |
26952597 |
agccttgtcgtggcctgctttactcgttggatgggttgctcagagtgcaaggtgcaaatatgctatttatttcacatatgtgattttctgaagtgagtgg |
26952498 |
T |
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| Q |
319 |
ttgttaatttttatgtcaaatatgaggtggtgcccttaatattctattttgtgttgctgttaatatcaattatgatgaaatagggttcagtttggtgaaa |
418 |
Q |
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| T |
26952497 |
ttgttaatttttatgtcaaatatgaggtagtgcccttaatattctattttgtgttgctgttaatatcaattatgatgaaatagggttcagttcggtgaaa |
26952398 |
T |
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| Q |
419 |
g-ttgtcttagttttggataaagaactctagactaaaactttgcacatggttacatttctcggtctcctttgctact |
494 |
Q |
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| T |
26952397 |
gtttgtcttagttttggataaagaactctagactaaaactttgcacatggttacatttctcggtctcctttgttact |
26952321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 201 - 338
Target Start/End: Complemental strand, 26944846 - 26944709
Alignment:
| Q |
201 |
tttttggtgttagattcgagccctgtcgtggcctgctttgctcgttggatgggttgctcagagtgcaaggtgcaaatatgctatttatttcacatatgtg |
300 |
Q |
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|||||| ||||||||||||| || ||||||||||||| || ||||||||||| || ||||||||||||||||||| | ||||||||| | ||||||| |
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| T |
26944846 |
tttttgttgttagattcgaggattggcgtggcctgctttacttgttggatgggtcgcacagagtgcaaggtgcaaatttactatttattactaatatgtg |
26944747 |
T |
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| Q |
301 |
attttctgaagtgagtggttgttaatttttatgtcaaa |
338 |
Q |
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| T |
26944746 |
attctctgatgtaagaggttgaaagtttttatgtcaaa |
26944709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 202 - 286
Target Start/End: Original strand, 26977793 - 26977877
Alignment:
| Q |
202 |
ttttggtgttagattcgagccctgtcgtggcctgctttgctcgttggatgggttgctcagagtgcaaggtgcaaatatgctattt |
286 |
Q |
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| T |
26977793 |
ttttggtgttagattcgaggattggcatggccttctttacttgttggattggttgctcagagtgcaaggtgcaaatatactattt |
26977877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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