View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1771_high_9 (Length: 484)
Name: NF1771_high_9
Description: NF1771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1771_high_9 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 164 - 484
Target Start/End: Original strand, 3731194 - 3731510
Alignment:
| Q |
164 |
atccgtacttgaatttttgctactgtgcgttcacttaggaatgccttcactgctttccacaacatcttaaagccagaaccagcattaataataaagagtt |
263 |
Q |
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| T |
3731194 |
atccgtacttgaatttttgctactgtgcgttcacttaggaatgccttcactgctttccacaacatcttaaagccagaaccagcattaataataaagagtt |
3731293 |
T |
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| Q |
264 |
tatttagagtctgcnnnnnnnnnnnnntagatgaactttaatcaacttcaatagggaaactactacaataaaaatttaagaattcgtctttaacttttta |
363 |
Q |
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| T |
3731294 |
tatttagagtctgcaaaaaaaaaaa--tagatgaactttaatcaacttcaatagggaaactactacaataaaaatttaagaattcgtctttaacttttta |
3731391 |
T |
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| Q |
364 |
tgttattattgttgtaaactttgaaaactatataaccattgtcatattatcaaataatctaacttaatcacacattaaaatagcagtcatgtcacatata |
463 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |
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| T |
3731392 |
tgttattattgttgtaaactttgaaaactatataaccattgtcatattatcaaataatctaacttaatcacacatt--aatagcattcatgtcacatata |
3731489 |
T |
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| Q |
464 |
tccaaatcatctgctcatgag |
484 |
Q |
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| T |
3731490 |
tccaaatcatctgctcatgag |
3731510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 20 - 125
Target Start/End: Original strand, 3731091 - 3731196
Alignment:
| Q |
20 |
aattagaacccaaaacctgaaaaaggaatgttggagatttaacataaacacaaaactgtaaaatagaggttgatacaacaaaatatagtaatagttgtat |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
3731091 |
aattagaacccaaaacctgaaaaaggaatgttggagatttaacataaacacaaaactgtaagatagaggttgatacaacaaaatatagtaatagttgtat |
3731190 |
T |
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| Q |
120 |
aaaatc |
125 |
Q |
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|||||| |
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| T |
3731191 |
aaaatc |
3731196 |
T |
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