View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1771_low_1 (Length: 878)

Name: NF1771_low_1
Description: NF1771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1771_low_1
NF1771_low_1
[»] chr2 (4 HSPs)
chr2 (8-862)||(17992670-17993522)
chr2 (492-549)||(26006195-26006252)
chr2 (739-769)||(7485621-7485651)
chr2 (735-768)||(6103724-6103757)
[»] chr6 (13 HSPs)
chr6 (16-233)||(25074372-25074589)
chr6 (25-233)||(26636148-26636356)
chr6 (25-233)||(26742114-26742322)
chr6 (35-227)||(26959634-26959826)
chr6 (25-233)||(26975453-26975661)
chr6 (35-204)||(26950274-26950443)
chr6 (54-204)||(31288836-31288986)
chr6 (13-189)||(26849258-26849434)
chr6 (25-212)||(27664677-27664864)
chr6 (127-216)||(24716104-24716193)
chr6 (141-233)||(25074191-25074283)
chr6 (739-768)||(4885241-4885270)
chr6 (151-215)||(25074023-25074088)
[»] chr4 (3 HSPs)
chr4 (483-549)||(19125502-19125568)
chr4 (722-768)||(6727480-6727524)
chr4 (739-768)||(40915688-40915717)
[»] chr3 (4 HSPs)
chr3 (739-769)||(55252475-55252505)
chr3 (739-768)||(6028837-6028866)
chr3 (485-534)||(55252603-55252652)
chr3 (739-768)||(55256514-55256543)
[»] chr1 (4 HSPs)
chr1 (739-769)||(16457122-16457152)
chr1 (739-769)||(41488291-41488321)
chr1 (739-769)||(41492555-41492585)
chr1 (485-534)||(41492412-41492461)
[»] scaffold0758 (1 HSPs)
scaffold0758 (739-768)||(781-810)
[»] chr8 (1 HSPs)
chr8 (722-769)||(21505214-21505260)
[»] chr7 (1 HSPs)
chr7 (739-768)||(22826328-22826357)
[»] chr5 (2 HSPs)
chr5 (739-768)||(1566050-1566079)
chr5 (739-768)||(10895393-10895422)


Alignment Details
Target: chr2 (Bit Score: 790; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 790; E-Value: 0
Query Start/End: Original strand, 8 - 862
Target Start/End: Original strand, 17992670 - 17993522
Alignment:
Q  8 gacatcatcattatattccaagtctagaagtgaattcacttctgatattcgagatttgagaccaataaggtaatcggcaacatgtaatggaacgtggtta 107  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17992670 gacaccatcattatattccaagtctagaagtgaattcacttctgatattcgagatttgagaccaataaggtaatcggcaacatgtaatggaacgtggtta 17992769  T
Q  108 atcttgttggaagtgtctgtaactattttttcaataaaatcacgttcatattcatttctgtccaatcaaaaatatttaaatacatgcatcagaataaaaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17992770 atcttgttggaagtgtctgtaactattttttcaataaaatcacgttcatattcatttctgtccaatcaaaaatatttaaatacatgcatcagaataaaaa 17992869  T
Q  208 tcacatatacgtcttgatatgtaataacaaattaatataatgaaaatcaaattgtttcaacatgcaatgacctaaacatatatcttttctctataacaca 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17992870 tcacatatacgtcttgatatgtaataacaaattaatataatgaaaatcaaattgtttcaacatgcaatgacctaaacatatatcttttctctataacaca 17992969  T
Q  308 tttaacttaaggaagataatatatatttggcttctatttattatgtataatttctttgaactggctttgaaacacggttttccaaagnnnnnnntctcaa 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  17992970 tttaacttaaggaagataatatatatttggcttctatttattatgtataatttctttgaactggctttgaaacacggttttccaaagaaaaaaatctcaa 17993069  T
Q  408 cagaatacatgtgctcgttgtgaggggtgtgttgacccactttattcagttgattttgtttttattgaaaaaccttgtttcaaatccggtttgcccctcc 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  17993070 cagaatacatgtgctcgttgtgaggggtgtgttgacccactttattcagttgattttgtttttattggaaaaccttgtttcaaatccggtttgcccctcc 17993169  T
Q  508 tccactgccgtgacactttccggcatctagattcttcactttacggttcaatcagccactatcaacgccgttgcctccttttccgacgacattttcagtg 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17993170 tccactgccgtgacactttccggcatctagattcttcactttacggttcaatcagccactatcaacgccgttgcctccttttccgacgacattttcagtg 17993269  T
Q  608 actgaccaccaccatccgctgcacctcgtccagaccggcctgtcctccaatgatccgccgtagaccacctctgacgcgcccacatgcgccacctgaactt 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17993270 actgaccaccaccatccgctgcacctcgtccagaccggcctgtcctccaatgatccgccgtagaccacctctgacgcacccacatgcgccacctgaactt 17993369  T
Q  708 cttgtaacatcatccacacagttttcatcatatatgtctctcttttctctcttattcaacataattaatgcttgattatattatgttaattgattcaatn 807  Q
    |||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  17993370 cttgtaacatcatccacacagttttcatc--atatgtctctcttttctctcttattcaacataattaatgcttgattatattatgttaattgattcaata 17993467  T
Q  808 nnnnnngaggaatatatatattatctgtgtgtggcaaaacaagattgatataaag 862  Q
          |||||||||||||||||||||||||||||||||||||||||||||||||    
T  17993468 aaaaaagaggaatatatatattatctgtgtgtggcaaaacaagattgatataaag 17993522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 492 - 549
Target Start/End: Complemental strand, 26006252 - 26006195
Alignment:
Q  492 tccggtttgcccctcctccactgccgtgacactttccggcatctagattcttcacttt 549  Q
    ||||||||||||||||||| |||||| ||||||||  ||||||||| ||| |||||||    
T  26006252 tccggtttgcccctcctcccctgccgggacactttttggcatctagtttcatcacttt 26006195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 739 - 769
Target Start/End: Complemental strand, 7485651 - 7485621
Alignment:
Q  739 atatgtctctcttttctctcttattcaacat 769  Q
    |||||||||||||||||||||||||||||||    
T  7485651 atatgtctctcttttctctcttattcaacat 7485621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 735 - 768
Target Start/End: Original strand, 6103724 - 6103757
Alignment:
Q  735 tcatatatgtctctcttttctctcttattcaaca 768  Q
    |||||||||||||||||||||||||||| |||||    
T  6103724 tcatatatgtctctcttttctctcttatacaaca 6103757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 138; Significance: 1e-71; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 138; E-Value: 1e-71
Query Start/End: Original strand, 16 - 233
Target Start/End: Complemental strand, 25074589 - 25074372
Alignment:
Q  16 cattatattccaagtctagaagtgaattcacttctgatattcgagatttgagaccaataaggtaatcggcaacatgtaatggaacgtggttaatcttgtt 115  Q
    |||||||| |||||||||||||||||||||||||||| |||||||||   ||||||| ||||||||| | ||||||||| ||||  ||||||||||||||    
T  25074589 cattatatcccaagtctagaagtgaattcacttctgaaattcgagatcgaagaccaacaaggtaatcagtaacatgtaaaggaatttggttaatcttgtt 25074490  T
Q  116 ggaagtgtctgtaactattttttcaataaaatcacgttcatattcatttctgtccaatcaaaaatatttaaatacatgcatcagaataaaaatcacatat 215  Q
    |||   |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| ||||||||||    
T  25074489 ggagacgtctctaactattttttcaataaaatcacgttcatattcatttctgtccaatcataaatatttaaatacatgcattagaataataatcacatat 25074390  T
Q  216 acgtcttgatatgtaata 233  Q
    | |||||||||| |||||    
T  25074389 atgtcttgatatataata 25074372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 25 - 233
Target Start/End: Complemental strand, 26636356 - 26636148
Alignment:
Q  25 ccaagtctagaagtgaattcacttctgatattcgagatttgagaccaataaggtaatcggcaacatgtaatggaacgtggttaatcttgttggaagtgtc 124  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||||  ||||||||||| ||||||| |||   |||    
T  26636356 ccaagtctagaagtgagttcacttctgatattcgagatttgagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtc 26636257  T
Q  125 tgtaactattttttcaataaaatcacgttcatattcatttctgtccaatcaaaaatatttaaatacatgcatcagaataaaaatcacatatacgtcttga 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||| |||||| |||| || ||||    
T  26636256 tgtaactattttttcaataaaatcacgttcatattcatttctgtccaatcatgaatatttaaatacatgtatcagaataacaatcacgtatatgtattga 26636157  T
Q  225 tatgtaata 233  Q
    ||| |||||    
T  26636156 tatataata 26636148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 25 - 233
Target Start/End: Complemental strand, 26742322 - 26742114
Alignment:
Q  25 ccaagtctagaagtgaattcacttctgatattcgagatttgagaccaataaggtaatcggcaacatgtaatggaacgtggttaatcttgttggaagtgtc 124  Q
    |||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||| ||||||||||  ||||||||||| ||||||| |||   |||    
T  26742322 ccaagtctagaagtgagttcacttctgatattcgagatttgagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtc 26742223  T
Q  125 tgtaactattttttcaataaaatcacgttcatattcatttctgtccaatcaaaaatatttaaatacatgcatcagaataaaaatcacatatacgtcttga 224  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||| |||||||||| |||||| |||| || ||||    
T  26742222 tgtaactattttttcaataaaatcacgttcatattcatttctgtccaatcatgaatatttaaatacatgtatcagaataacaatcacgtatatgtattga 26742123  T
Q  225 tatgtaata 233  Q
    ||| |||||    
T  26742122 tatataata 26742114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 35 - 227
Target Start/End: Complemental strand, 26959826 - 26959634
Alignment:
Q  35 aagtgaattcacttctgatattcgagatttgagaccaataaggtaatcggcaacatgtaatggaacgtggttaatcttgttggaagtgtctgtaactatt 134  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||| ||||| |||||||||||||||||   |||||||||||||    
T  26959826 aagtgaattcacttttgatattcgagatttgagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttggagacgtctgtaactatt 26959727  T
Q  135 ttttcaataaaatcacgttcatattcatttctgtccaatcaaaaatatttaaatacatgcatcagaataaaaatcacatatacgtcttgatat 227  Q
    ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| || ||||||| ||||||||||| || |||||||    
T  26959726 ttttcaataaaatcacgttcatactcatttctgtccaatcataaatatttaaatacatgtattagaataacaatcacatatatgtattgatat 26959634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 133; E-Value: 1e-68
Query Start/End: Original strand, 25 - 233
Target Start/End: Complemental strand, 26975661 - 26975453
Alignment:
Q  25 ccaagtctagaagtgaattcacttctgatattcgagatttgagaccaataaggtaatcggcaacatgtaatggaacgtggttaatcttgttggaagtgtc 124  Q
    |||||||||| ||||| ||||||| | |||||||||||||||| |||| ||||||||| ||||||||||| ||||||||||| ||||||| |||   |||    
T  26975661 ccaagtctagtagtgagttcacttttaatattcgagatttgagtccaacaaggtaatcagcaacatgtaaaggaacgtggttgatcttgtaggagacgtc 26975562  T
Q  125 tgtaactattttttcaataaaatcacgttcatattcatttctgtccaatcaaaaatatttaaatacatgcatcagaataaaaatcacatatacgtcttga 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||  |||    
T  26975561 tgtaactattttttcaataaaatcacgttcatattcatttctgtccaatcataaatatttaaatacatgcatcagaataacaatcacatatatgtactga 26975462  T
Q  225 tatgtaata 233  Q
    ||| |||||    
T  26975461 tatataata 26975453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 118; E-Value: 1e-59
Query Start/End: Original strand, 35 - 204
Target Start/End: Complemental strand, 26950443 - 26950274
Alignment:
Q  35 aagtgaattcacttctgatattcgagatttgagaccaataaggtaatcggcaacatgtaatggaacgtggttaatcttgttggaagtgtctgtaactatt 134  Q
    ||||||||||||||||||||||||||||||||| |||| ||||||||| ||||||||||  ||||||||||| ||||||| |||   |||||||||||||    
T  26950443 aagtgaattcacttctgatattcgagatttgagtccaacaaggtaatcagcaacatgtagaggaacgtggttgatcttgtaggagacgtctgtaactatt 26950344  T
Q  135 ttttcaataaaatcacgttcatattcatttctgtccaatcaaaaatatttaaatacatgcatcagaataa 204  Q
    |||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  26950343 ttttcaataaaatcgcgttcatattcatttctgtccaatcataaatatttaaataaatgcatcagaataa 26950274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 54 - 204
Target Start/End: Complemental strand, 31288986 - 31288836
Alignment:
Q  54 attcgagatttgagaccaataaggtaatcggcaacatgtaatggaacgtggttaatcttgttggaagtgtctgtaactattttttcaataaaatcacgtt 153  Q
    ||||||||||||||||||| ||||||||| ||||||||||| ||||| |||||||||||||||||    |||||||||||||||||||||||||| ||||    
T  31288986 attcgagatttgagaccaacaaggtaatcagcaacatgtaaaggaacatggttaatcttgttggagacatctgtaactattttttcaataaaatctcgtt 31288887  T
Q  154 catattcatttctgtccaatcaaaaatatttaaatacatgcatcagaataa 204  Q
    ||||||||||| |||||||||| ||||||||||||| ||||||||||||||    
T  31288886 catattcatttatgtccaatcataaatatttaaataaatgcatcagaataa 31288836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 13 - 189
Target Start/End: Complemental strand, 26849434 - 26849258
Alignment:
Q  13 catcattatattccaagtctagaagtgaattcacttctgatattcgagatttgagaccaataaggtaatcggcaacatgtaatggaacgtggttaatctt 112  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||||||||| || |||| ||||||||| |||||||| || ||||| ||||| |||||    
T  26849434 catcattagattccaattctagaagtgaattcacttctgatattcgagatttaagtccaacaaggtaatcagcaacatgcaaaggaacatggttgatctt 26849335  T
Q  113 gttggaagtgtctgtaactattttttcaataaaatcacgttcatattcatttctgtccaatcaaaaatatttaaata 189  Q
    ||||||    ||  ||||||||||  |||||||||   |||||||||||||||||| || ||| |||||||| ||||    
T  26849334 gttggagacatccttaactattttcccaataaaatggtgttcatattcatttctgttcattcagaaatatttgaata 26849258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 25 - 212
Target Start/End: Original strand, 27664677 - 27664864
Alignment:
Q  25 ccaagtctagaagtgaattcacttctgatattcgagatttgagaccaataaggtaatcggcaacatgtaatggaacgtggttaatcttgttggaagtgtc 124  Q
    ||||||||||||||||||||||||||||||||||||||| ||| |||| |||||| || |||||||||||  ||    |||| |||||||||||   |||    
T  27664677 ccaagtctagaagtgaattcacttctgatattcgagattcgagtccaacaaggtactcagcaacatgtaaatgacaacggttgatcttgttggagacgtc 27664776  T
Q  125 tgtaactattttttcaataaaatcacgttcatattcatttctgtccaatcaaaaatatttaaatacatgcatcagaataaaaatcaca 212  Q
    ||||||||||| ||||||||| |    |||||||| ||||||||||||||| | ||||||||||| ||| || ||||||| |||||||    
T  27664777 tgtaactatttcttcaataaatttgtattcatatttatttctgtccaatcatacatatttaaatagatgtattagaataacaatcaca 27664864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 127 - 216
Target Start/End: Complemental strand, 24716193 - 24716104
Alignment:
Q  127 taactattttttcaataaaatcacgttcatattcatttctgtccaatcaaaaatatttaaatacatgcatcagaataaaaatcacatata 216  Q
    |||||||||||||||||| ||| | ||||| |||||||||||||||||| |||| ||  ||||| ||||||||||||| |||||||||||    
T  24716193 taactattttttcaataacatcgccttcatgttcatttctgtccaatcataaatgttataatacgtgcatcagaataacaatcacatata 24716104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 141 - 233
Target Start/End: Complemental strand, 25074283 - 25074191
Alignment:
Q  141 ataaaatcacgttcatattcatttctgtccaatcaaaaatatttaaatacatgcatcagaataaaaatcacatatacgtcttgatatgtaata 233  Q
    |||||||||||||||||||||||| |||||||||| | |||||||| || | |||| ||||||  ||||||||||| || |||||||||||||    
T  25074283 ataaaatcacgttcatattcatttatgtccaatcatagatatttaactatacgcattagaatagcaatcacatatatgtattgatatgtaata 25074191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 739 - 768
Target Start/End: Original strand, 4885241 - 4885270
Alignment:
Q  739 atatgtctctcttttctctcttattcaaca 768  Q
    ||||||||||||||||||||||||||||||    
T  4885241 atatgtctctcttttctctcttattcaaca 4885270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 151 - 215
Target Start/End: Complemental strand, 25074088 - 25074023
Alignment:
Q  151 gttcatattcatttctgtccaatcaaaaata-tttaaatacatgcatcagaataaaaatcacatat 215  Q
    |||||||| |||||||||||||||| ||||| |||| |||||||||| || |||| ||||| ||||    
T  25074088 gttcatatccatttctgtccaatcataaatattttatatacatgcattaggataacaatcatatat 25074023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 2e-17; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 483 - 549
Target Start/End: Original strand, 19125502 - 19125568
Alignment:
Q  483 tgtttcaaatccggtttgcccctcctccactgccgtgacactttccggcatctagattcttcacttt 549  Q
    |||||||| || ||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||    
T  19125502 tgtttcaactctggtttgcccctcctccattgccatgacacttttcggcatctagattcttcacttt 19125568  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 722 - 768
Target Start/End: Complemental strand, 6727524 - 6727480
Alignment:
Q  722 cacacagttttcatcatatatgtctctcttttctctcttattcaaca 768  Q
    ||||| |||||||||||||  ||||||||||||||||||||||||||    
T  6727524 cacacggttttcatcatat--gtctctcttttctctcttattcaaca 6727480  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 739 - 768
Target Start/End: Original strand, 40915688 - 40915717
Alignment:
Q  739 atatgtctctcttttctctcttattcaaca 768  Q
    ||||||||||||||||||||||||||||||    
T  40915688 atatgtctctcttttctctcttattcaaca 40915717  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000008; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 739 - 769
Target Start/End: Original strand, 55252475 - 55252505
Alignment:
Q  739 atatgtctctcttttctctcttattcaacat 769  Q
    |||||||||||||||||||||||||||||||    
T  55252475 atatgtctctcttttctctcttattcaacat 55252505  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 739 - 768
Target Start/End: Complemental strand, 6028866 - 6028837
Alignment:
Q  739 atatgtctctcttttctctcttattcaaca 768  Q
    ||||||||||||||||||||||||||||||    
T  6028866 atatgtctctcttttctctcttattcaaca 6028837  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 534
Target Start/End: Original strand, 55252603 - 55252652
Alignment:
Q  485 tttcaaatccggtttgcccctcctccactgccgtgacactttccggcatc 534  Q
    |||||| ||||||||||| ||||| |||||||||| || |||||||||||    
T  55252603 tttcaactccggtttgccactccttcactgccgtgtcaatttccggcatc 55252652  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 739 - 768
Target Start/End: Original strand, 55256514 - 55256543
Alignment:
Q  739 atatgtctctcttttctctcttattcaaca 768  Q
    ||||||||||||||||||||||||||||||    
T  55256514 atatgtctctcttttctctcttattcaaca 55256543  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000008; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 739 - 769
Target Start/End: Original strand, 16457122 - 16457152
Alignment:
Q  739 atatgtctctcttttctctcttattcaacat 769  Q
    |||||||||||||||||||||||||||||||    
T  16457122 atatgtctctcttttctctcttattcaacat 16457152  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 739 - 769
Target Start/End: Complemental strand, 41488321 - 41488291
Alignment:
Q  739 atatgtctctcttttctctcttattcaacat 769  Q
    |||||||||||||||||||||||||||||||    
T  41488321 atatgtctctcttttctctcttattcaacat 41488291  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 739 - 769
Target Start/End: Complemental strand, 41492585 - 41492555
Alignment:
Q  739 atatgtctctcttttctctcttattcaacat 769  Q
    |||||||||||||||||||||||||||||||    
T  41492585 atatgtctctcttttctctcttattcaacat 41492555  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 534
Target Start/End: Complemental strand, 41492461 - 41492412
Alignment:
Q  485 tttcaaatccggtttgcccctcctccactgccgtgacactttccggcatc 534  Q
    |||||| ||||||||||| ||||| |||||||||| || |||||||||||    
T  41492461 tttcaactccggtttgccactccttcactgccgtgtcaatttccggcatc 41492412  T

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Target: scaffold0758 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 739 - 768
Target Start/End: Original strand, 781 - 810
Alignment:
Q  739 atatgtctctcttttctctcttattcaaca 768  Q
    ||||||||||||||||||||||||||||||    
T  781 atatgtctctcttttctctcttattcaaca 810  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 722 - 769
Target Start/End: Complemental strand, 21505260 - 21505214
Alignment:
Q  722 cacacagttttcatcatatatgtctctcttttctctc-ttattcaacat 769  Q
    |||||||||||||||||||  |||||||||||||||| |||||||||||    
T  21505260 cacacagttttcatcatat--gtctctcttttctctctttattcaacat 21505214  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 739 - 768
Target Start/End: Complemental strand, 22826357 - 22826328
Alignment:
Q  739 atatgtctctcttttctctcttattcaaca 768  Q
    ||||||||||||||||||||||||||||||    
T  22826357 atatgtctctcttttctctcttattcaaca 22826328  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 739 - 768
Target Start/End: Complemental strand, 1566079 - 1566050
Alignment:
Q  739 atatgtctctcttttctctcttattcaaca 768  Q
    ||||||||||||||||||||||||||||||    
T  1566079 atatgtctctcttttctctcttattcaaca 1566050  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 739 - 768
Target Start/End: Original strand, 10895393 - 10895422
Alignment:
Q  739 atatgtctctcttttctctcttattcaaca 768  Q
    ||||||||||||||||||||||||||||||    
T  10895393 atatgtctctcttttctctcttattcaaca 10895422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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