View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1771_low_10 (Length: 454)
Name: NF1771_low_10
Description: NF1771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1771_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 349; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 16 - 436
Target Start/End: Complemental strand, 26965620 - 26965200
Alignment:
| Q |
16 |
atatccacatcatgcatatgctccatcggcgaatacaccacctacaaatccgttgtcgggtggaccttcacacaaacggccacccagtggtaaggggaag |
115 |
Q |
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|||| ||||||||||||| |||||||||| |||| |||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||| |
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| T |
26965620 |
atattcacatcatgcatacgctccatcggtgaatccaccacctacaaatccattgtcgggtggacctttacacaagcggccacccagtggtaaggggaag |
26965521 |
T |
|
| Q |
116 |
ggtgtcggatccactaccactagtcattctctcaaggtaacttgtgtagtttctagttctccagaccaatgtatacctgtgccgacgactgcacatacac |
215 |
Q |
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||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||| ||||||| |
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| T |
26965520 |
agtgtcggatccactaccgctagtcattctcacaaggtaactcctgtagtttctagttctccagaccaatttatacctgtgccgatgactgcgcatacac |
26965421 |
T |
|
| Q |
216 |
agattccatctcctcatacctatgttccacctccacctaccagttctcaatctccatctacccaatttccattacatgtatatccagtaaatgcatatgc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26965420 |
agattccatctcctcatacctatgttccacctccacctaccagttctcaatctccatctacccaatttccattacatgtatatccagtaaatgcatatgc |
26965321 |
T |
|
| Q |
316 |
accaccggcaaatacaccatcaacatacgcactgccaacatatccactatcaagcgaaccttcaaagaagcgtccacctagtgataagggggaggatatc |
415 |
Q |
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|||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26965320 |
accaccggcatatacaccatcgacatacgcactgccaacatattcactatcaagcgaaccttcaaagaagcgtccacctagtgataagggggaggatatc |
26965221 |
T |
|
| Q |
416 |
gcatccactactaacggtcgt |
436 |
Q |
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| T |
26965220 |
gcatccactactaacggtcgt |
26965200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 13 - 256
Target Start/End: Complemental strand, 26965944 - 26965701
Alignment:
| Q |
13 |
aatatatccacatcatgcatatgctccatcggcgaatacaccacctacaaatccgttgtcgggtggaccttcacacaaacggccacccagtggtaagggg |
112 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
26965944 |
aatatatccacatcatgcatatgctccatcggcgaatacaccacctacaaatccgttgtcgggtggaccttcacacatacggccacccagtggtaagggg |
26965845 |
T |
|
| Q |
113 |
aagggtgtcggatccactaccactagtcattctctcaaggtaacttgtgtagtttctagttctccagaccaatgtatacctgtgccgacgactgcacata |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26965844 |
aagggtgtcggatccactaccactagtcattctctcaaggtaacttgtgtagtttctagttctccagaccaatgtatacctgtgccgacgactgcacata |
26965745 |
T |
|
| Q |
213 |
cacagattccatctcctcatacctatgttccacctccacctacc |
256 |
Q |
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| T |
26965744 |
cacagattccatcttctcatacatatgctccgcctccacctacc |
26965701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 95 - 333
Target Start/End: Complemental strand, 26965247 - 26965006
Alignment:
| Q |
95 |
ccacccagtggtaaggggaagggtgtcggatccactaccactagtcattctctcaaggtaacttgtgtagtttctagttctcc---agaccaatgtatac |
191 |
Q |
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||||| |||| ||||||| ||| | ||| ||||||||| | ||| ||||| |||||||||| | ||||||||| ||||||| |||||| | ||||| |
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| T |
26965247 |
ccacctagtgataagggggaggatatcgcatccactactaacggtcgttctcgcaaggtaactcgagtagtttctggttctcctttagaccagtttatac |
26965148 |
T |
|
| Q |
192 |
ctgtgccgacgactgcacatacacagattccatctcctcatacctatgttccacctccacctaccagttctcaatctccatctacccaatttccattaca |
291 |
Q |
| |
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|| |||||| |||||||||||||| || ||||||| ||||||||||| || |||||||||||| ||||||| ||||| ||||||||||||||||||| |
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| T |
26965147 |
ctatgccgatgactgcacatacacggactccatcttctcatacctatactctgcctccacctacccgttctcagtctccgtctacccaatttccattacc |
26965048 |
T |
|
| Q |
292 |
tgtatatccagtaaatgcatatgcaccaccggcaaatacacc |
333 |
Q |
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|||||||||| ||||||||||||||||||| ||||||| |
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| T |
26965047 |
tgtatatccaccgcatgcatatgcaccaccggcgtatacacc |
26965006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 187 - 255
Target Start/End: Complemental strand, 26966106 - 26966038
Alignment:
| Q |
187 |
tatacctgtgccgacgactgcacatacacagattccatctcctcatacctatgttccacctccacctac |
255 |
Q |
| |
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||||||| |||||||| ||||||||| ||||| ||||||||||||||| |||| ||| ||||||||||| |
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| T |
26966106 |
tatacctatgccgacggctgcacatatacagactccatctcctcatacatatgctccgcctccacctac |
26966038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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