View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1771_low_12 (Length: 409)
Name: NF1771_low_12
Description: NF1771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1771_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 64 - 393
Target Start/End: Complemental strand, 3094799 - 3094470
Alignment:
| Q |
64 |
atttttcgggattcaaatgaacaaagatacagtagtatatattcattatggagtaataataacttgatacaatctaagtctagagtggattttctcagtg |
163 |
Q |
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| T |
3094799 |
atttttcgggattcaaatgaacaaagatacagtagtatatattcattatggagtaataataacttgatacaatctaagtctagagtggattttctcagtg |
3094700 |
T |
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| Q |
164 |
atcatacatcaattaatgaacatcaatagataaaaatcatatgttaaatttatttatacaatgttaagtggtttcatcagcagcaaatctctctctcaat |
263 |
Q |
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| T |
3094699 |
accatacatcaattaatgaacatcaatagataaaaatcatatgttaaatttatttatacaatattaagtggtttcatcatcagcaaatctctctctcaat |
3094600 |
T |
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| Q |
264 |
attttgactcccatatacctgcactccaaattaataaaaaatcaaataccataagatatctgaaaacacaagataaaggagcaatttcaacaatgtacac |
363 |
Q |
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| T |
3094599 |
attttgactcccatatacctgcactccaaattaataaaaaatcaagtaccataagatatctgaaaacacaagataaaggagcaatttcaacaatgtacac |
3094500 |
T |
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| Q |
364 |
acattgtcacacataaatgaaattcatatg |
393 |
Q |
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| T |
3094499 |
acattgtcacacacaaatgaaattcatatg |
3094470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 103 - 393
Target Start/End: Complemental strand, 3085916 - 3085624
Alignment:
| Q |
103 |
tattcattatggagtaataataacttgatacaatctaagtctagagtggattttctcagtgatcatacatcaattaatgaacatcaatagataaaaatca |
202 |
Q |
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| T |
3085916 |
tattcattgtggagtaatattaacttgaaataatccaagtctagagtggattttcttagtggctagacatcaaatgatgaacatgaatagagaaatacta |
3085817 |
T |
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| Q |
203 |
tatgttaaatttatttatacaatgttaagtggtttcatcagcagcaaatctctctctcaatattttgactcccatatacctgcactccaaattaataaaa |
302 |
Q |
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| T |
3085816 |
aaaattaaatttatcaatacaatattaattggtttcatcagcagcaagtctctctctcaatattctgactcccatatacctgcacaccaaattaataaaa |
3085717 |
T |
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| Q |
303 |
aa--tcaaataccataagatatctgaaaacacaagataaaggagcaatttcaacaatgtacacacattgtcacacataaatgaaattcatatg |
393 |
Q |
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| T |
3085716 |
aaattcaagtaccataagatatatgaaatcacaagattaaggaacaatttcaccaatgtacacacattgtaacacacaaattaaatttatatg |
3085624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 3094865 - 3094824
Alignment:
| Q |
1 |
tccaaacaaatctcgtactcttacatccattctaattgaaat |
42 |
Q |
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| T |
3094865 |
tccaaacaaatctcgtactcttacatccattctaattgaaat |
3094824 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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