View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1771_low_13 (Length: 409)
Name: NF1771_low_13
Description: NF1771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1771_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 5268900 - 5269311
Alignment:
| Q |
1 |
gatagttttcgacttcgataaaaccataattgattgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttccc |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5268900 |
gatagttttcgacttcgataaaaccataattgattgtgatagtgataattgggttgttgatgaattaggtttcaccgatttgttcaatcaactccttccc |
5268999 |
T |
|
| Q |
101 |
actatgcctttcaattctctcatggtatgtttttcactcttttcatatgctctgtttttacaaatactctgtttttcattcactcgatattctgaat--- |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
5269000 |
actatgcctttcaattctctcatggtatgtttttcactcttttcatatgctctgtttttaaaaatactctgtttttcattcactcgatattctgaatatt |
5269099 |
T |
|
| Q |
198 |
----------------attaacttgtgttttggttttggaaatacaggacagaatgatgatggagcttcattcaaatggaaaaagtatcgaagatattga |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5269100 |
atatttataacaaataattaacttgtgttttggttttggaaatacaggacagaatgatgatggagcttcattcaaatggaaaaagtatcgaagatattga |
5269199 |
T |
|
| Q |
282 |
aaaagttcttcaaaggataccaattaatcacagaataatatctgctattaaatcagcttatgctttagggtgtgatttgaggattgttagcgatgctaat |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5269200 |
aaaagttcttcaaaggataccaattaatcacagaataatatctgctattaaatcagcttatgctttggggtgtgatttgaggattgttagcgatgctaat |
5269299 |
T |
|
| Q |
382 |
acgattttcatt |
393 |
Q |
| |
|
|||||||||||| |
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|
| T |
5269300 |
acgattttcatt |
5269311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 20 - 382
Target Start/End: Complemental strand, 5276835 - 5276460
Alignment:
| Q |
20 |
aaaaccataattgattgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttcccactatgcctttcaattctc |
119 |
Q |
| |
|
||||| || ||||||||||| |||||||||||| | |||||||||| |||||||| ||||||||||||||||||||||| || ||||||| |||||| |
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|
| T |
5276835 |
aaaacgatcattgattgtgacagtgataattggttgattgatgaattgggtttcactgatttgttcaatcaactccttcctacaatgccttggaattctg |
5276736 |
T |
|
| Q |
120 |
tcatggtatgtttttcactcttttcatatgctctgtttttacaaatactctgtttttcattcactcgatattctgaatattaact------tgtg----- |
208 |
Q |
| |
|
| |||||||| |||| | || |||||| ||||||||||| ||||||||||||||||||||| | || |||||| || | || |||| |
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| T |
5276735 |
ttatggtatgctttttattcctttcatgtgctctgttttgtaaaatactctgtttttcattcatttgaaattctgcattgtctctaatatatgtgattaa |
5276636 |
T |
|
| Q |
209 |
--ttttggttttggaaatacaggacagaatgatgatggagcttcattcaaatggaaaaagtatcgaagatattgaaaaagttcttcaaaggataccaatt |
306 |
Q |
| |
|
|||||||||||||| | |||||| ||||||||||||| ||||||||||||||| || || ||||| |||||||| |||||||||||||| |||||| |
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|
| T |
5276635 |
ctttttggttttggaattgtaggacaaaatgatgatggagtttcattcaaatggaataaccattgaagagattgaaaaggttcttcaaaggattccaatt |
5276536 |
T |
|
| Q |
307 |
aatcacagaataatatctgctattaaatcagcttatgctttagggtgtgatttgaggattgttagcgatgctaata |
382 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
5276535 |
catcacagaataatacctgcaattaaatcagctcatgctttagggtgtgatttgaggattgttagtgatgctaata |
5276460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 215 - 393
Target Start/End: Original strand, 5249913 - 5250091
Alignment:
| Q |
215 |
ttttggaaatacaggacagaatgatgatggagcttcattcaaatggaaaaagtatcgaagatattgaaaaagttcttcaaaggataccaattaatcacag |
314 |
Q |
| |
|
|||| ||| ||||||| || |||||||||||| ||||||||||||| |||| || ||||| |||||||||||||||||||||||||||||| ||||||| |
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|
| T |
5249913 |
tttttgaattacaggataggatgatgatggagattcattcaaatggtaaaaccattgaagagattgaaaaagttcttcaaaggataccaattcatcacag |
5250012 |
T |
|
| Q |
315 |
aataatatctgctattaaatcagcttatgctttagggtgtgatttgaggattgttagcgatgctaatacgattttcatt |
393 |
Q |
| |
|
||||||| |||||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||| |||||||| |
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|
| T |
5250013 |
aataatacctgctattaaatcagcacatgcattagggtgtgatttgaggattgttagtgatgctaatacatttttcatt |
5250091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 207 - 382
Target Start/End: Complemental strand, 5272656 - 5272481
Alignment:
| Q |
207 |
tgttttggttttggaaatacaggacagaatgatgatggagcttcattcaaatggaaaaagtatcgaagatattgaaaaagttcttcaaaggataccaatt |
306 |
Q |
| |
|
||||||||||||| || || |||||| |||||||||||| ||||||||||||| || || ||||| |||||||| |||||||||||||| |||||| |
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|
| T |
5272656 |
tgttttggttttgaaattataggacaaaatgatgatggaatttcattcaaatggtgtaaccattgaagagattgaaaaggttcttcaaaggattccaatt |
5272557 |
T |
|
| Q |
307 |
aatcacagaataatatctgctattaaatcagcttatgctttagggtgtgatttgaggattgttagcgatgctaata |
382 |
Q |
| |
|
|||||||||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
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|
| T |
5272556 |
catcacagaataatacctgcaattaaatcagctcatgctttagggtgtgatttgaggattgttagtgatgctaata |
5272481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 3 - 134
Target Start/End: Original strand, 5249667 - 5249798
Alignment:
| Q |
3 |
tagttttcgacttcgataaaaccataattgattgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttcccac |
102 |
Q |
| |
|
||||||| || || ||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||||| |||||||||||||| ||||||||||| |
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|
| T |
5249667 |
tagtttttgattttgataaaaccataattgattgtgacagtgataattgggttattgatgaattgggtttcactgatttgttcaatcagctccttcccac |
5249766 |
T |
|
| Q |
103 |
tatgcctttcaattctctcatggtatgttttt |
134 |
Q |
| |
|
|||||||| |||||||||||||||||||||| |
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|
| T |
5249767 |
tatgccttggaattctctcatggtatgttttt |
5249798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 6 - 148
Target Start/End: Complemental strand, 5272878 - 5272736
Alignment:
| Q |
6 |
ttttcgacttcgataaaaccataattgattgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttcccactat |
105 |
Q |
| |
|
|||| ||||| || |||||||| |||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||| ||||||||||| || |
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|
| T |
5272878 |
tttttgactttgacaaaaccatcattgattgtgatagtgataattggttgattgatgaattgggtttcaccgatttgttcaatcagctccttcccacaat |
5272779 |
T |
|
| Q |
106 |
gcctttcaattctctcatggtatgtttttcactcttttcatat |
148 |
Q |
| |
|
||||| ||||| ||||||||||||||| | ||| ||||||| |
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|
| T |
5272778 |
gccttggaattccgtcatggtatgttttttattctcttcatat |
5272736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 17 - 116
Target Start/End: Original strand, 19569150 - 19569249
Alignment:
| Q |
17 |
gataaaaccataattgattgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttcccactatgcctttcaatt |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
19569150 |
gataaaaccttaattgattgtgatagtgataattgggatgttgatgaattaggtttcatcgatttgttcaatcaactccttcttactatgcctttcaatt |
19569249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 7e-25; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 5 - 127
Target Start/End: Complemental strand, 26315844 - 26315722
Alignment:
| Q |
5 |
gttttcgacttcgataaaaccataattgattgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttcccacta |
104 |
Q |
| |
|
||||||||||| || |||||||| ||||| ||||| || ||||| |||||| |||||||||||||||||| |||||||||||||||||| ||||||| | |
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|
| T |
26315844 |
gttttcgactttgacaaaaccattattgaatgtgacagcgataactgggttgttgatgaattaggtttcaatgatttgttcaatcaactctttcccacca |
26315745 |
T |
|
| Q |
105 |
tgcctttcaattctctcatggta |
127 |
Q |
| |
|
|||| || || | |||||||||| |
|
|
| T |
26315744 |
tgccattgaactatctcatggta |
26315722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 5 - 108
Target Start/End: Complemental strand, 43110952 - 43110849
Alignment:
| Q |
5 |
gttttcgacttcgataaaaccataattgattgtgatagtgataattgggttcttgatgaattaggtttcaccgatttgttcaatcaactccttcccacta |
104 |
Q |
| |
|
||||| ||||| || ||||||||| |||| ||||| |||||||| |||||| |||||||||| |||||||| |||||||||||| |||| ||||||| | |
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|
| T |
43110952 |
gtttttgactttgacaaaaccatagttgaatgtgacagtgataactgggttgttgatgaattgggtttcactgatttgttcaatgaacttgttcccacca |
43110853 |
T |
|
| Q |
105 |
tgcc |
108 |
Q |
| |
|
|||| |
|
|
| T |
43110852 |
tgcc |
43110849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 43105463 - 43105420
Alignment:
| Q |
29 |
attgattgtgatagtgataattgggttcttgatgaattaggttt |
72 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||| || ||||| |
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|
| T |
43105463 |
attgaatgtgatagtgataattgggttcttgatgagtttggttt |
43105420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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