View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1771_low_14 (Length: 393)

Name: NF1771_low_14
Description: NF1771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1771_low_14
NF1771_low_14
[»] chr5 (21 HSPs)
chr5 (1-393)||(9276532-9276922)
chr5 (11-163)||(18229563-18229715)
chr5 (47-158)||(30501137-30501248)
chr5 (47-158)||(30541480-30541591)
chr5 (46-114)||(7719245-7719314)
chr5 (44-186)||(23117221-23117362)
chr5 (46-187)||(16667288-16667429)
chr5 (8-180)||(3140790-3140962)
chr5 (56-105)||(24041030-24041079)
chr5 (42-180)||(2918588-2918727)
chr5 (42-158)||(30104802-30104918)
chr5 (17-111)||(8208223-8208318)
chr5 (44-114)||(8221163-8221234)
chr5 (38-156)||(17692262-17692380)
chr5 (37-100)||(7968445-7968509)
chr5 (42-158)||(34899128-34899244)
chr5 (47-114)||(39558764-39558832)
chr5 (42-186)||(112478-112622)
chr5 (125-187)||(34032165-34032227)
chr5 (46-114)||(14043422-14043491)
chr5 (42-114)||(15720108-15720181)
[»] chr4 (27 HSPs)
chr4 (17-158)||(7852511-7852652)
chr4 (37-158)||(35777686-35777807)
chr4 (42-185)||(41462020-41462163)
chr4 (11-158)||(45900110-45900257)
chr4 (43-158)||(47995730-47995845)
chr4 (44-158)||(8297869-8297983)
chr4 (42-156)||(7444377-7444492)
chr4 (47-156)||(53014203-53014312)
chr4 (39-180)||(20394614-20394753)
chr4 (17-158)||(51834912-51835053)
chr4 (17-114)||(8261149-8261247)
chr4 (17-114)||(8274566-8274664)
chr4 (46-158)||(25115260-25115371)
chr4 (41-156)||(49400612-49400727)
chr4 (37-187)||(24175386-24175535)
chr4 (37-154)||(50341854-50341971)
chr4 (12-156)||(50426989-50427133)
chr4 (46-114)||(31429318-31429387)
chr4 (55-186)||(27953046-27953176)
chr4 (17-114)||(37138129-37138227)
chr4 (42-114)||(13585253-13585326)
chr4 (39-111)||(34391696-34391769)
chr4 (42-158)||(24229638-24229754)
chr4 (124-157)||(8260201-8260234)
chr4 (124-157)||(8273619-8273652)
chr4 (125-158)||(37383829-37383862)
chr4 (56-104)||(32104297-32104345)
[»] chr7 (19 HSPs)
chr7 (42-160)||(43234786-43234904)
chr7 (42-187)||(28770446-28770591)
chr7 (17-114)||(3692918-3693017)
chr7 (37-160)||(21727393-21727516)
chr7 (12-158)||(44537339-44537485)
chr7 (37-158)||(27123272-27123393)
chr7 (12-114)||(7653617-7653720)
chr7 (42-109)||(10200615-10200682)
chr7 (37-114)||(28663126-28663204)
chr7 (42-114)||(25886211-25886284)
chr7 (42-114)||(40753939-40754011)
chr7 (42-114)||(35923499-35923568)
chr7 (42-114)||(9718986-9719059)
chr7 (42-114)||(35731328-35731401)
chr7 (42-114)||(39320974-39321047)
chr7 (44-99)||(48488172-48488228)
chr7 (8-114)||(35496531-35496638)
chr7 (37-114)||(14651377-14651455)
chr7 (68-114)||(27337738-27337784)
[»] chr2 (17 HSPs)
chr2 (44-194)||(19890183-19890333)
chr2 (13-187)||(1334847-1335021)
chr2 (42-180)||(9448946-9449083)
chr2 (65-160)||(14295624-14295718)
chr2 (46-158)||(31452343-31452454)
chr2 (44-109)||(33074868-33074933)
chr2 (42-106)||(13538445-13538509)
chr2 (8-114)||(15505585-15505692)
chr2 (46-187)||(20064880-20065020)
chr2 (64-114)||(11944888-11944938)
chr2 (14-114)||(41933172-41933273)
chr2 (44-180)||(37993054-37993190)
chr2 (42-106)||(41544027-41544091)
chr2 (56-114)||(7673235-7673294)
chr2 (14-51)||(13082049-13082086)
chr2 (124-160)||(5524457-5524493)
chr2 (42-106)||(33962936-33963000)
[»] scaffold0036 (1 HSPs)
scaffold0036 (17-187)||(62492-62662)
[»] chr8 (17 HSPs)
chr8 (42-156)||(1369851-1369965)
chr8 (42-158)||(4384128-4384243)
chr8 (46-111)||(35901975-35902041)
chr8 (12-158)||(27801188-27801334)
chr8 (42-187)||(33013015-33013159)
chr8 (70-158)||(37813423-37813511)
chr8 (17-114)||(42636333-42636431)
chr8 (68-114)||(28207665-28207711)
chr8 (46-114)||(12684490-12684559)
chr8 (42-114)||(33949542-33949615)
chr8 (42-116)||(44960502-44960576)
chr8 (62-114)||(3520820-3520873)
chr8 (142-187)||(30534987-30535032)
chr8 (5-106)||(31265046-31265147)
chr8 (46-114)||(24695788-24695856)
chr8 (17-85)||(32959788-32959856)
chr8 (38-106)||(39691103-39691171)
[»] scaffold0268 (1 HSPs)
scaffold0268 (42-116)||(20241-20315)
[»] chr1 (20 HSPs)
chr1 (42-114)||(2864183-2864256)
chr1 (42-158)||(39150580-39150696)
chr1 (10-156)||(44829272-44829417)
chr1 (42-158)||(43397007-43397125)
chr1 (42-158)||(47187813-47187929)
chr1 (41-114)||(6883119-6883193)
chr1 (75-187)||(26811258-26811368)
chr1 (48-187)||(48022351-48022490)
chr1 (44-158)||(8365501-8365615)
chr1 (42-158)||(38748713-38748829)
chr1 (124-158)||(8794414-8794448)
chr1 (14-114)||(31889203-31889305)
chr1 (8-114)||(3982306-3982412)
chr1 (13-144)||(18432916-18433047)
chr1 (42-111)||(45640591-45640660)
chr1 (124-185)||(39973863-39973924)
chr1 (124-156)||(8043880-8043912)
chr1 (64-108)||(14579446-14579490)
chr1 (46-114)||(32562350-32562418)
chr1 (47-98)||(41019556-41019608)
[»] scaffold0419 (1 HSPs)
scaffold0419 (11-158)||(1063-1210)
[»] chr6 (13 HSPs)
chr6 (11-158)||(28874397-28874544)
chr6 (41-114)||(31855095-31855169)
chr6 (42-111)||(32823721-32823791)
chr6 (40-158)||(1840981-1841099)
chr6 (46-180)||(30739575-30739709)
chr6 (50-158)||(3766275-3766383)
chr6 (42-115)||(2864916-2864991)
chr6 (55-116)||(3443905-3443966)
chr6 (42-114)||(17215675-17215748)
chr6 (42-115)||(2884127-2884204)
chr6 (16-111)||(7421716-7421812)
chr6 (44-111)||(30801785-30801853)
chr6 (124-180)||(34235480-34235536)
[»] chr3 (15 HSPs)
chr3 (41-160)||(29083890-29084010)
chr3 (42-185)||(51351248-51351391)
chr3 (46-114)||(16663018-16663086)
chr3 (57-158)||(42846012-42846114)
chr3 (64-160)||(24791493-24791588)
chr3 (47-114)||(40673475-40673543)
chr3 (45-116)||(47638934-47639006)
chr3 (38-108)||(39551844-39551915)
chr3 (8-71)||(46093519-46093582)
chr3 (18-116)||(52249365-52249464)
chr3 (42-114)||(26900015-26900088)
chr3 (128-185)||(39977457-39977514)
chr3 (39-87)||(25753553-25753601)
chr3 (42-106)||(46547773-46547837)
chr3 (62-114)||(52638171-52638223)
[»] scaffold1444 (1 HSPs)
scaffold1444 (68-114)||(1723-1769)
[»] scaffold0003 (1 HSPs)
scaffold0003 (42-111)||(103641-103711)


Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 393
Target Start/End: Original strand, 9276532 - 9276922
Alignment:
Q  1 tcaataatttaaaggaaaatattaacgagtgttacaggggtactctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattg 99  Q
    ||||||||| |||||||||||||||||| |||   |||| | ||||||||||| |||||||| |||||||||| ||||||||||||||||||||| ||||    
T  9276532 tcaataattcaaaggaaaatattaacgattgtcttaggg-tgctctttaagcactttaaatagtaagtttttaatgaaaagttatgtattgaatgcattg 9276630  T
Q  100 gaaattgtaatagttaannnnnnnaaaagaataattactaaatttaggatgcttaaagaatactccaaagacactcgttaaaaagaccataatttaaaat 199  Q
     ||||| |||||||| |       |||| |||||||||||||||| |||||||| |||||||| || |||||||||||||| |||||| |||||||||||    
T  9276631 aaaattataatagttgattttttaaaaa-aataattactaaatttgggatgcttgaagaatac-ccgaagacactcgttaacaagaccctaatttaaaat 9276728  T
Q  200 catgtaaattttgtttataaaatttaactcaattaatattactaggttgagaatcttcacccgtgtttagacccagaacctcacagtacaaattcaccta 299  Q
    || |||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| || |||||||||||    
T  9276729 cacgtaaattttgtttataaaatttaattcaattaatattactaggttgagaatcttgacccgtgtttagacccataacctcacaataaaaattcaccta 9276828  T
Q  300 aacttttttcatcgataccacttgtgttagttccacagtttcttatcttaggtgtggttcttctgttttaaaattttaggcgtatgcttataat 393  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  9276829 aacttttttcatcgataccacttgtgttagttccaaagtttcttatcttaggtgtggttcttctgttttaaaattttaggagtatgattataat 9276922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 11 - 163
Target Start/End: Original strand, 18229563 - 18229715
Alignment:
Q  11 aaaggaaaatattaacgagtgttacaggggtactctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaa 109  Q
    ||||| |||| |||||||||| | | |||  |||||||||||| |||||||  |||||||||| |||||| || | ||||||||||||||||||||||||    
T  18229563 aaagggaaatgttaacgagtgcttccgggacactctttaagcactttaaatggtaagtttttaatgaaaaattgtttattgaatgtattggaaattgtaa 18229662  T
Q  110 tagttaannnnnnnaaaagaataattactaaatttaggatgcttaaagaatact 163  Q
    |||||||       ||||||||||||||||||||| ||||||||||||| ||||    
T  18229663 tagttaa-ctttttaaaagaataattactaaatttgggatgcttaaagagtact 18229715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 47 - 158
Target Start/End: Original strand, 30501137 - 30501248
Alignment:
Q  47 ttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaaattta 145  Q
    ||||||| |||||||| |||||||| | ||||||||| |||||||||||||||||||||||||||| || |       |||||||||||||||||||||     
T  30501137 ttaagcactttaaatagtaagttttaaatgaaaagttgtgtattgaatgtattggaaattgtaataattga-ctttttaaaagaataattactaaatttg 30501235  T
Q  146 ggatgcttaaaga 158  Q
    |||||||||||||    
T  30501236 ggatgcttaaaga 30501248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 47 - 158
Target Start/End: Original strand, 30541480 - 30541591
Alignment:
Q  47 ttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaaattta 145  Q
    ||||||| |||||||| |||||||| | ||||||||| |||||||||||||||||||||||||||| || |       |||||||||||||||||||||     
T  30541480 ttaagcactttaaatagtaagttttaaatgaaaagttgtgtattgaatgtattggaaattgtaataattga-ctttttaaaagaataattactaaatttg 30541578  T
Q  146 ggatgcttaaaga 158  Q
    |||||||||||||    
T  30541579 ggatgcttaaaga 30541591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 7719314 - 7719245
Alignment:
Q  46 tttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    |||||||| ||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||||    
T  7719314 tttaagcactttaaataataagtttttaatgaaaagttgtgtattgaatatattggaaattgtaatagtt 7719245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 186
Target Start/End: Original strand, 23117221 - 23117362
Alignment:
Q  44 tctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaaat 142  Q
    ||||||| ||||||||||| |||||||||| |||||| ||||||||| |||||||||||||||||||| |||||       |||||||||| | ||||||    
T  23117221 tctttaatcattttaaatagtaagtttttaatgaaaaattatgtattaaatgtattggaaattgtaattgttaa--ctttaaaaagaataactgctaaat 23117318  T
Q  143 ttaggatgcttaaagaatactccaaagacactcgttaaaaagac 186  Q
    |||  ||||||||||| ||| || ||  |||||||||| |||||    
T  23117319 ttaaaatgcttaaagattaccccgaatgcactcgttaacaagac 23117362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 46 - 187
Target Start/End: Original strand, 16667288 - 16667429
Alignment:
Q  46 tttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaaattt 144  Q
    |||||||| |||||||| |||||||||| |||||| || |||||||||||||||||||||||||||| || |       ||||||||||||| |||||||    
T  16667288 tttaagcactttaaatagtaagtttttaatgaaaaattgtgtattgaatgtattggaaattgtaataattga-ctttttaaaagaataattattaaattt 16667386  T
Q  145 aggatgcttaaagaatactccaaagacactcgttaaaaagacc 187  Q
      |||||||||||| | | ||  || ||||| |||||||||||    
T  16667387 gtgatgcttaaagagtgccccggaggcactctttaaaaagacc 16667429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 8 - 180
Target Start/End: Complemental strand, 3140962 - 3140790
Alignment:
Q  8 tttaaaggaaaatattaacgagtgttacaggggtactctttaagcattttaaataataagtttt-tatgaaaagttatgtattgaatgtattggaaattg 106  Q
    ||||| ||||||| |||| ||||||| | |||  || |||||| || |||||||||||||||||  || ||||||| | |||| |||| |||| ||||||    
T  3140962 tttaatggaaaatgttaatgagtgttcccgggacacactttaaacactttaaataataagttttaaataaaaagttgtatattaaatgaattgaaaattg 3140863  T
Q  107 taatagttaannnnnnnaaaagaataattactaaatttaggatgcttaaagaatactccaaagacactcgttaa 180  Q
    |||||||| |       ||||||||||||| |||||||| |||| |||||||||   ||||| |||||||||||    
T  3140862 taatagttga-ctttttaaaagaataattattaaatttatgatgtttaaagaatgtcccaaatacactcgttaa 3140790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 24041030 - 24041079
Alignment:
Q  56 ttaaataataagtttttatgaaaagttatgtattgaatgtattggaaatt 105  Q
    ||||||| ||| |||||||||||||||||||||| |||||||||||||||    
T  24041030 ttaaatagtaactttttatgaaaagttatgtatttaatgtattggaaatt 24041079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 42 - 180
Target Start/End: Original strand, 2918588 - 2918727
Alignment:
Q  42 actctttaagcattttaaat--aataagtttttatgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattacta 139  Q
    ||||||||||||||||||||   | || |||| |||||||||| |||||| |||| |||||||||| |||||||| |       |||| |||||||| ||    
T  2918588 actctttaagcattttaaattgtaaaatttttaatgaaaagttgtgtattaaatgcattggaaattataatagttgacatttttaaaa-aataattatta 2918686  T
Q  140 aatttaggatgcttaaagaatactccaaagacactcgttaa 180  Q
    |||||   ||||||||||| ||| |||||| ||||||||||    
T  2918687 aatttgaaatgcttaaagagtaccccaaaggcactcgttaa 2918727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 42 - 158
Target Start/End: Complemental strand, 30104918 - 30104802
Alignment:
Q  42 actctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaa 140  Q
    ||||||||| || ||||| |  |||||||||| ||||||||| ||||||||||| ||||||||||||||| ||| |       |||| |||| |||||||    
T  30104918 actctttaaacactttaagtggtaagtttttaatgaaaagttgtgtattgaatgcattggaaattgtaattgttgactttttaaaaa-aatagttactaa 30104820  T
Q  141 atttaggatgcttaaaga 158  Q
    |||| |||||||||||||    
T  30104819 atttgggatgcttaaaga 30104802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 8208318 - 8208223
Alignment:
Q  17 aaatattaacgagtgttacaggggtactctttaagcattttaaataataagtttt-tatgaaaagttatgtattgaatgtattggaaattgtaata 111  Q
    |||| |||||||||| | | || ||||||||||| ||  |||||| ||||||||| |||||||||||||||| |||||| |||  |||||||||||    
T  8208318 aaatgttaacgagtgcttccggagtactctttaaacacattaaatgataagttttatatgaaaagttatgtaatgaatgcattaaaaattgtaata 8208223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 8221234 - 8221163
Alignment:
Q  44 tctttaagcattttaaataataagttttt-atgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    ||||||||||||||||||| ||||||||| || |||| || ||||||||||| |||| || |||||||||||    
T  8221234 tctttaagcattttaaatagtaagtttttaataaaaaattgtgtattgaatgcattgaaagttgtaatagtt 8221163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 38 - 156
Target Start/End: Complemental strand, 17692380 - 17692262
Alignment:
Q  38 gggtactctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataatta 136  Q
    |||||||||||||||| || ||||| || ||||||| ||||||||| |||| | | || |||| ||||||||| |||| |       || ||||||||||    
T  17692380 gggtactctttaagcacttaaaatagtaggtttttaatgaaaagttgtgtagtaattgcattgaaaattgtaacagttgacttttt-aagagaataatta 17692282  T
Q  137 ctaaatttaggatgcttaaa 156  Q
    ||||||||||||||||||||    
T  17692281 ctaaatttaggatgcttaaa 17692262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 100
Target Start/End: Complemental strand, 7968509 - 7968445
Alignment:
Q  37 ggggtactctttaagcattttaaataataagttttt-atgaaaagttatgtattgaatgtattgg 100  Q
    |||| |||||||||||| |||||||| ||||||||| |||||||||| |||||| |||| |||||    
T  7968509 ggggcactctttaagcactttaaatagtaagtttttaatgaaaagttgtgtattaaatgcattgg 7968445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 158
Target Start/End: Original strand, 34899128 - 34899244
Alignment:
Q  42 actctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaa 140  Q
    ||||||||| || |||||||| |||||||| | ||||||||||| |||| |||| ||| |||||||||||| ||         ||||||||||||||||     
T  34899128 actctttaaacactttaaatagtaagttttaaatgaaaagttatatattaaatgcattagaaattgtaataatt-gtctttttaaaagaataattactat 34899226  T
Q  141 atttaggatgcttaaaga 158  Q
    |||| |||||||||||||    
T  34899227 atttgggatgcttaaaga 34899244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 114
Target Start/End: Original strand, 39558764 - 39558832
Alignment:
Q  47 ttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    |||||||||||||||| |||||||||| ||||||||  |||||  |||| |||||||||||||| ||||    
T  39558764 ttaagcattttaaatagtaagtttttattgaaaagtcgtgtatcaaatgcattggaaattgtaacagtt 39558832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 186
Target Start/End: Original strand, 112478 - 112622
Alignment:
Q  42 actctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaa 140  Q
    |||||||||||| ||||||||| || |||||| |||||| || |||||| |||  |||| ||||||||  |||| |       |||||||||||||||||    
T  112478 actctttaagcactttaaataacaaatttttaatgaaaaattgtgtattaaatacattgaaaattgtatcagttgacttttc-aaaagaataattactaa 112576  T
Q  141 atttaggatgcttaaagaatactccaaagacactcgttaaaaagac 186  Q
     |||| |||||||||||| | | || | |||||||||||| |||||    
T  112577 ttttatgatgcttaaagagtgccccgatgacactcgttaacaagac 112622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 125 - 187
Target Start/End: Original strand, 34032165 - 34032227
Alignment:
Q  125 aaagaataattactaaatttaggatgcttaaagaatactccaaagacactcgttaaaaagacc 187  Q
    |||||||||||||| | ||||| ||||||||||| | | |||| |||||||||||| ||||||    
T  34032165 aaagaataattacttattttagaatgcttaaagagtgccccaaggacactcgttaacaagacc 34032227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 14043491 - 14043422
Alignment:
Q  46 tttaagcattttaaataataagtttt-tatgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    ||||||||||||||||| |||||||| ||| |||| || |||||| |||||| || ||||||| ||||||    
T  14043491 tttaagcattttaaatattaagttttatataaaaaattgtgtattaaatgtaatgaaaattgtgatagtt 14043422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 15720181 - 15720108
Alignment:
Q  42 actctttaagcattttaaataataagtt-tttatgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    ||||||||| || ||||| || |||||| ||||||||||||| |||||| | |  |||||||||||||||||||    
T  15720181 actctttaaacactttaattagtaagttctttatgaaaagttgtgtattaagttcattggaaattgtaatagtt 15720108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 17 - 158
Target Start/End: Original strand, 7852511 - 7852652
Alignment:
Q  17 aaatattaacgagtgttacaggggtactctttaagcattttaaataataagttttt-atgaaaagttatgtattgaatgtattggaaattgtaatagtta 115  Q
    |||||||||||||||  || |||| |||||||||||| |||||||| ||||||||| |||||||||| |||||| |||| |||| |||||||||||||||    
T  7852511 aaatattaacgagtgccaccggggcactctttaagcactttaaatagtaagtttttaatgaaaagttgtgtattaaatgcattgaaaattgtaatagtta 7852610  T
Q  116 annnnnnnaaaagaataattactaaatttaggatgcttaaaga 158  Q
    |       |||||||||||||||||||||||||||||||||||    
T  7852611 a-ttttttaaaagaataattactaaatttaggatgcttaaaga 7852652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 35777686 - 35777807
Alignment:
Q  37 ggggtactctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataatt 135  Q
    |||||| |||||||||| |||||||  |||||||||| ||||||||| ||||||||||| ||| |||||||||||||||||       ||||||||||||    
T  35777686 ggggtattctttaagcactttaaatggtaagtttttaatgaaaagttgtgtattgaatgcattagaaattgtaatagttaa-ctttttaaaagaataatt 35777784  T
Q  136 actaaatttaggatgcttaaaga 158  Q
    ||||||||| ||||| |||||||    
T  35777785 actaaatttgggatggttaaaga 35777807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 185
Target Start/End: Complemental strand, 41462163 - 41462020
Alignment:
Q  42 actctttaagcattttaaataataagttttt-atgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaa 140  Q
    ||||||||||||||||||||| ||||||||| ||||||| ||||||||| |||| ||  ||||||||||||||| |       |||||||||||||||||    
T  41462163 actctttaagcattttaaatagtaagtttttaatgaaaaattatgtattaaatgcataagaaattgtaatagttga-ctttttaaaagaataattactaa 41462065  T
Q  141 atttaggatgcttaaagaatactccaaagacactcgttaaaaaga 185  Q
    || ||  ||||||||||| | |||||  |||||||||||| ||||    
T  41462064 atataaaatgcttaaagagtgctccagggacactcgttaacaaga 41462020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 158
Target Start/End: Original strand, 45900110 - 45900257
Alignment:
Q  11 aaaggaaaatattaacgagtgttacaggggtactctttaagcattttaaataataagtttt-tatgaaaagttatgtattgaatgtattggaaattgtaa 109  Q
    ||||| |||| ||||||||||   | |||| |||||||||||| ||||| || |||||||  ||||||||||| ||||||||||| |||||||||||| |    
T  45900110 aaagggaaatgttaacgagtgccccgggggcactctttaagcactttaattagtaagtttcatatgaaaagttgtgtattgaatgcattggaaattgtga 45900209  T
Q  110 tagttaannnnnnnaaaagaataattactaaatttaggatgcttaaaga 158  Q
    ||||| |       |||||||||||| ||||||||||||||||||||||    
T  45900210 tagttga-ctttataaaagaataattgctaaatttaggatgcttaaaga 45900257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 43 - 158
Target Start/End: Original strand, 47995730 - 47995845
Alignment:
Q  43 ctctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaaa 141  Q
    ||||||||||| |||||||  |||||||||| ||||||||||||||||||||| |||| ||||||||||| ||||       |||||| |||||||||||    
T  47995730 ctctttaagcactttaaattgtaagtttttaatgaaaagttatgtattgaatgcattgaaaattgtaataattaa-ctttttaaaagagtaattactaaa 47995828  T
Q  142 tttaggatgcttaaaga 158  Q
    ||||| |||||||||||    
T  47995829 tttagaatgcttaaaga 47995845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 44 - 158
Target Start/End: Complemental strand, 8297983 - 8297869
Alignment:
Q  44 tctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaaat 142  Q
    |||||||||| |||||||| |||||||||| |||||| || ||||||||||| |||||||||||||| |||| |       |||||||||||||||||||    
T  8297983 tctttaagcactttaaatagtaagtttttaatgaaaaattgtgtattgaatgcattggaaattgtaacagttga-cattttaaaagaataattactaaat 8297885  T
Q  143 ttaggatgcttaaaga 158  Q
    || |||||||||||||    
T  8297884 ttgggatgcttaaaga 8297869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 42 - 156
Target Start/End: Original strand, 7444377 - 7444492
Alignment:
Q  42 actctttaagcattttaaataataagtttttat-gaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaa 140  Q
    ||||||||| || |||||||| ||||||||||  |||||||| ||||||||||| |||| |||||||||||||| |       ||||| |||||||||||    
T  7444377 actctttaaacactttaaatactaagtttttaaagaaaagttgtgtattgaatgcattgaaaattgtaatagttgacttttttaaaagtataattactaa 7444476  T
Q  141 atttaggatgcttaaa 156  Q
    |||| |||||||||||    
T  7444477 atttgggatgcttaaa 7444492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 47 - 156
Target Start/End: Original strand, 53014203 - 53014312
Alignment:
Q  47 ttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaaattta 145  Q
    ||||||| |||||||  || ||||||| | ||||||| |||||||||||||||||||||||||||||||||       ||||| ||||||||||||||||    
T  53014203 ttaagcactttaaatggtatgtttttaataaaaagttgtgtattgaatgtattggaaattgtaatagttaattttttaaaaag-ataattactaaattta 53014301  T
Q  146 ggatgcttaaa 156  Q
    ||||| |||||    
T  53014302 ggatgtttaaa 53014312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 39 - 180
Target Start/End: Complemental strand, 20394753 - 20394614
Alignment:
Q  39 ggtactctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattac 137  Q
    |||||||||||| ||||||||||   ||||||||| ||||||  | ||||||||||||||||||||||||||||||| |       ||||||||||||||    
T  20394753 ggtactctttaaacattttaaatgg-aagtttttaatgaaaatgt-tgtattgaatgtattggaaattgtaatagttcacttttt-aaaagaataattac 20394657  T
Q  138 taaatttaggatgcttaaagaatactccaaagacactcgttaa 180  Q
    ||||||| ||||||||||||| | |||   |||||||||||||    
T  20394656 taaatttgggatgcttaaagagtgctctggagacactcgttaa 20394614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 158
Target Start/End: Complemental strand, 51835053 - 51834912
Alignment:
Q  17 aaatattaacgagtgttacaggggtactctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagtta 115  Q
    |||| |||||||||||| | | |  ||||||||| || |||||||| ||| |||||| ||||||||| |||||| |||| |||||||||| ||||||||     
T  51835053 aaatgttaacgagtgttcccgagacactctttaaacactttaaatagtaaatttttaatgaaaagttgtgtatttaatgcattggaaattataatagttg 51834954  T
Q  116 annnnnnnaaaagaataattactaaatttaggatgcttaaaga 158  Q
    |       |||||||||||| ||||||||||||||||||||||    
T  51834953 acttttt-aaaagaataattgctaaatttaggatgcttaaaga 51834912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 8261247 - 8261149
Alignment:
Q  17 aaatattaacgagtgttacaggggtactctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    |||| |||||||||||  | |||| |||||| ||||| |||||||| |||||||||| |||||||||||||||| |||| |||| ||||||||| ||||    
T  8261247 aaatgttaacgagtgtctctggggcactcttcaagcactttaaatagtaagtttttaatgaaaagttatgtattaaatgcattgaaaattgtaacagtt 8261149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 8274664 - 8274566
Alignment:
Q  17 aaatattaacgagtgttacaggggtactctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    |||| |||||||||||  | |||| |||||| ||||| |||||||| |||||||||| |||||||||||||||| |||| |||| ||||||||| ||||    
T  8274664 aaatgttaacgagtgtctctggggcactcttcaagcactttaaatagtaagtttttaatgaaaagttatgtattaaatgcattgaaaattgtaacagtt 8274566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 158
Target Start/End: Original strand, 25115260 - 25115371
Alignment:
Q  46 tttaagcattttaaataataagtttttatgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaaattta 145  Q
    ||||| || |||||||| ||||||||||| ||||||| |||||| | || |||||||||||||||||||||       |||| ||||||||||||||||     
T  25115260 tttaaacactttaaatagtaagtttttataaaaagttgtgtattcactgcattggaaattgtaatagttaa-ctttttaaaataataattactaaatttt 25115358  T
Q  146 ggatgcttaaaga 158  Q
    |||| ||||||||    
T  25115359 ggattcttaaaga 25115371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 156
Target Start/End: Complemental strand, 49400727 - 49400612
Alignment:
Q  41 tactctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattacta 139  Q
    ||||||||||||| ||||||||| ||  ||||| ||||||||  |||||| |||  ||||||||||||||||||| |       ||||||||||||||||    
T  49400727 tactctttaagcactttaaataacaaaattttaatgaaaagtcgtgtattaaatacattggaaattgtaatagttgatttttt-aaaagaataattacta 49400629  T
Q  140 aatttaggatgcttaaa 156  Q
    |||||||||||||||||    
T  49400628 aatttaggatgcttaaa 49400612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 37 - 187
Target Start/End: Original strand, 24175386 - 24175535
Alignment:
Q  37 ggggtactctttaagcattttaaataataagtttt-tatgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataatt 135  Q
    |||| |||||||||||| |||||||  |||||||| || |||||||| |||||| |||| |||  |||||||||||||| |       ||||||||| ||    
T  24175386 ggggcactctttaagcactttaaatggtaagttttgtacgaaaagttgtgtattaaatgcatttaaaattgtaatagtttactttt--aaaagaatattt 24175483  T
Q  136 actaaatttaggatgcttaaagaatactccaaagacactcgttaaaaagacc 187  Q
    ||||||||||||||||||||||| |   | || |||||||||||| ||||||    
T  24175484 actaaatttaggatgcttaaagagtgtcctaaggacactcgttaacaagacc 24175535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 154
Target Start/End: Original strand, 50341854 - 50341971
Alignment:
Q  37 ggggtactctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataatt 135  Q
    ||||||||||||||||| |||| ||| ||| |||| | ||||||||| |||||||||||  |||||||||||||||||| |       ||||||||||||    
T  50341854 ggggtactctttaagcactttatatagtaaattttaaatgaaaagttgtgtattgaatgcgttggaaattgtaatagttga-ctttttaaaagaataatt 50341952  T
Q  136 actaaatttaggatgctta 154  Q
    ||||||||| | |||||||    
T  50341953 actaaatttggaatgctta 50341971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 156
Target Start/End: Complemental strand, 50427133 - 50426989
Alignment:
Q  12 aaggaaaatattaacgagtgttacaggggtactctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaat 110  Q
    ||||||||| ||||||||||   | | || ||||||||| || |||||||| ||| |||||| ||||||||| ||| |||| || |||||||||||||||    
T  50427133 aaggaaaatgttaacgagtgcccctgtggcactctttaaacactttaaatagtaaatttttaatgaaaagttgtgtgttgattgcattggaaattgtaat 50427034  T
Q  111 agttaannnnnnnaaaagaataattactaaatttaggatgcttaaa 156  Q
    |||| |       |||||||||||||||||||||  ||||||||||    
T  50427033 agttga-cttttcaaaagaataattactaaatttgagatgcttaaa 50426989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 31429387 - 31429318
Alignment:
Q  46 tttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    |||||||| ||||| || |||||||| | ||||||||| ||||||||||| |||||||||||||||||||    
T  31429387 tttaagcactttaattagtaagttttaaatgaaaagttgtgtattgaatgcattggaaattgtaatagtt 31429318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 186
Target Start/End: Original strand, 27953046 - 27953176
Alignment:
Q  55 tttaaataataagtttttat-gaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaaatttaggatgctt 153  Q
    |||||||  ||||||||||  |||||||| ||||||||||| |||| ||||||||||||||||       |||| ||||| ||||||||||  |||||||    
T  27953046 tttaaatggtaagtttttaacgaaaagttgtgtattgaatgcattgaaaattgtaatagttaa-ctttttaaaataataa-tactaaatttgagatgctt 27953143  T
Q  154 aaagaatactccaaagacactcgttaaaaagac 186  Q
    ||||| | ||||  ||||||||||||| |||||    
T  27953144 aaagagtgctccggagacactcgttaacaagac 27953176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 37138129 - 37138227
Alignment:
Q  17 aaatattaacgagtgttacaggggtactctttaagcattttaaataataagtt-tttatgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    |||| |||||||||| | | |||  |||||||||||| ||||| ||  ||||| ||||||||||||| |||||||| || |||||||||| ||||||||    
T  37138129 aaatgttaacgagtgcttccgggacactctttaagcaatttaattagaaagttctttatgaaaagttgtgtattgagtgcattggaaattataatagtt 37138227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 13585253 - 13585326
Alignment:
Q  42 actctttaagcattttaaataataagtttt-tatgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    |||||||||||| |||||||  |||||||| |||||||||||||||| |||||  |||| ||||||||| ||||    
T  13585253 actctttaagcactttaaatggtaagttttatatgaaaagttatgtaatgaatacattgaaaattgtaacagtt 13585326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 39 - 111
Target Start/End: Original strand, 34391696 - 34391769
Alignment:
Q  39 ggtactctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaata 111  Q
    |||||||||||| || || ||||| |||||||||| | ||||||| |||||||| || ||||||||||||||||    
T  34391696 ggtactctttaaacacttaaaatagtaagtttttaataaaaagttgtgtattgattgcattggaaattgtaata 34391769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 42 - 158
Target Start/End: Original strand, 24229638 - 24229754
Alignment:
Q  42 actctttaagcattttaaataataagttttt-atgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaa 140  Q
    |||||||||||| ||||||||| |||||||| ||||||| || |||||| |||| |||| ||||||| ||| || |       |||||||||||||||||    
T  24229638 actctttaagcactttaaataaaaagtttttaatgaaaaattgtgtattaaatgcattgaaaattgtgataattta-cttttaaaaagaataattactaa 24229736  T
Q  141 atttaggatgcttaaaga 158  Q
    |||| || || |||||||    
T  24229737 attttggttgtttaaaga 24229754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 8260234 - 8260201
Alignment:
Q  124 aaaagaataattactaaatttaggatgcttaaag 157  Q
    ||||||||||||||||||||| ||||||||||||    
T  8260234 aaaagaataattactaaatttgggatgcttaaag 8260201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 8273652 - 8273619
Alignment:
Q  124 aaaagaataattactaaatttaggatgcttaaag 157  Q
    ||||||||||||||||||||| ||||||||||||    
T  8273652 aaaagaataattactaaatttgggatgcttaaag 8273619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 158
Target Start/End: Original strand, 37383829 - 37383862
Alignment:
Q  125 aaagaataattactaaatttaggatgcttaaaga 158  Q
    |||||||||||||||||||| |||||||||||||    
T  37383829 aaagaataattactaaattttggatgcttaaaga 37383862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 32104345 - 32104297
Alignment:
Q  56 ttaaataataagtttttatgaaaagttatgtattgaatgtattggaaat 104  Q
    |||||||||||||||||||||||| |||| |||| |||| ||| |||||    
T  32104345 ttaaataataagtttttatgaaaatttatatattcaatgcattagaaat 32104297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 42 - 160
Target Start/End: Complemental strand, 43234904 - 43234786
Alignment:
Q  42 actctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaa 140  Q
    |||||||||||| |||||||| ||| |||||| ||||||||||||||||||||||| ||||||||||||||||| |       |||||||||||||||||    
T  43234904 actctttaagcactttaaatagtaaatttttaatgaaaagttatgtattgaatgtaatggaaattgtaatagttta-ttttttaaaagaataattactaa 43234806  T
Q  141 atttaggatgcttaaagaat 160  Q
    || |||||||||||||||||    
T  43234805 atataggatgcttaaagaat 43234786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 42 - 187
Target Start/End: Complemental strand, 28770591 - 28770446
Alignment:
Q  42 actctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaa 140  Q
    |||||||||||| | |||||| |||||||||| ||||||||| ||||||||||| ||||||||||||||||||| |       |||||||||||||||||    
T  28770591 actctttaagcactctaaatagtaagtttttaatgaaaagttgtgtattgaatgcattggaaattgtaatagttga-cttttcaaaagaataattactaa 28770493  T
Q  141 atttaggatgcttaaagaatactccaaagacactcgttaaaaagacc 187  Q
     ||| ||||||||||||| | | ||  || |||||||||| ||||||    
T  28770492 ttttgggatgcttaaagagtgccccggaggcactcgttaacaagacc 28770446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 3693017 - 3692918
Alignment:
Q  17 aaatattaacgagtgttacaggggtactctttaagcattttaaataataagttttt--atgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    |||| |||||||||||| | |||| |||||||||| ||||||| || |||||||||  ||||||| || |||||||| || |||||||||||||||||||    
T  3693017 aaatgttaacgagtgtttccggggcactctttaagtattttaattagtaagtttttttatgaaaaattgtgtattgagtgcattggaaattgtaatagtt 3692918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 160
Target Start/End: Original strand, 21727393 - 21727516
Alignment:
Q  37 ggggtactctttaagcattttaaataataagtttttatgaaa-agttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataatt 135  Q
    |||| |||||||||||| || |||| |||||||||||  ||| | || ||||||||||||||||||||||||||||||| |       ||||||||||||    
T  21727393 ggggcactctttaagcacttcaaatgataagtttttaataaatatttgtgtattgaatgtattggaaattgtaatagttga-ctttttaaaagaataatt 21727491  T
Q  136 actaaatttaggatgcttaaagaat 160  Q
    ||||||||   ||||||||||||||    
T  21727492 actaaattggagatgcttaaagaat 21727516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 12 - 158
Target Start/End: Complemental strand, 44537485 - 44537339
Alignment:
Q  12 aaggaaaatattaacgagtgttacaggggtactctttaagcattttaaataataagttttt-atgaaaagttatgtattgaatgtattggaaattgtaat 110  Q
    |||| |||| ||||||||||   | |||| |||||||||||| |||||||| ||||||||| |||||||||||||||||  ||  | |||||||| ||||    
T  44537485 aagggaaatgttaacgagtgcccccggggcactctttaagcactttaaatagtaagtttttaatgaaaagttatgtattatatacaatggaaattataat 44537386  T
Q  111 agttaannnnnnnaaaagaataattactaaatttaggatgcttaaaga 158  Q
    |||| |       ||||||||||||||||||| | |||||||||||||    
T  44537385 agttga-ctttttaaaagaataattactaaatatgggatgcttaaaga 44537339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 158
Target Start/End: Complemental strand, 27123393 - 27123272
Alignment:
Q  37 ggggtactctttaagcattttaaataataagtttttat-gaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataatt 135  Q
    |||| |||||||||||| |||||||  ||||||||||  |||||||| |||| | |||| ||||||||||||||||||| |       |||||||| |||    
T  27123393 ggggcactctttaagcactttaaatggtaagtttttaacgaaaagttgtgtacttaatgcattggaaattgtaatagttga-ctttttaaaagaatgatt 27123295  T
Q  136 actaaatttaggatgcttaaaga 158  Q
    ||||||||| |||||||||||||    
T  27123294 actaaatttgggatgcttaaaga 27123272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 114
Target Start/End: Complemental strand, 7653720 - 7653617
Alignment:
Q  12 aaggaaaatattaacgagtgttacaggggtactctttaagcattttaaataataagttttt-atgaaaagttatgtattgaatgtattggaaattgtaat 110  Q
    ||||||||| |||||||||  | | |||  |||||||||||| |||||| | ||||||||| |||||||||| |||| |||||| |||||||||| ||||    
T  7653720 aaggaaaatgttaacgagttctcccgggacactctttaagcactttaaaaagtaagtttttaatgaaaagttgtgtaatgaatgaattggaaattataat 7653621  T
Q  111 agtt 114  Q
    ||||    
T  7653620 agtt 7653617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 109
Target Start/End: Complemental strand, 10200682 - 10200615
Alignment:
Q  42 actctttaagcattttaaataataagtttttatgaaaagttatgtattgaatgtattggaaattgtaa 109  Q
    |||||||||||| ||||||| ||||||||||||  ||||||||||||| |||| ||| ||||||||||    
T  10200682 actctttaagcactttaaatgataagtttttatagaaagttatgtatttaatgcatttgaaattgtaa 10200615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 28663126 - 28663204
Alignment:
Q  37 ggggtactctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    |||| |||||||||||| |||||||| |||| ||||| |||||| || ||||||||||| |||| ||||||||||||||    
T  28663126 ggggcactctttaagcactttaaatagtaaggttttaatgaaaaattgtgtattgaatgcattgaaaattgtaatagtt 28663204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 25886284 - 25886211
Alignment:
Q  42 actctttaagcattttaaataataagtttt-tatgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    ||||||||| || |||||||  |||||||| ||||||||||| |||||| ||||||||| ||||||||||||||    
T  25886284 actctttaaacactttaaatggtaagttttatatgaaaagttgtgtattaaatgtattgaaaattgtaatagtt 25886211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 40753939 - 40754011
Alignment:
Q  42 actctttaagcattttaaataataagttttt-atgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    ||||||||| |||||||||| |||||||||| |||||||||| |||||| |||||||| |||| ||||||||||    
T  40753939 actctttaaacattttaaatgataagtttttaatgaaaagttgtgtattaaatgtatt-gaaaatgtaatagtt 40754011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 35923499 - 35923568
Alignment:
Q  42 actctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    ||||||||| || ||||||||||||||||||| ||||||||    ||||||||| |||||||||||||||||||    
T  35923499 actctttaaacactttaaataataagtttttattgaaaagt----tattgaatgcattggaaattgtaatagtt 35923568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 9718986 - 9719059
Alignment:
Q  42 actctttaagcattttaaataataagtttt-tatgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    |||||||||||| |||||||  |||||||| |||||||||||||||| |||||  |||| ||||||||| ||||    
T  9718986 actctttaagcactttaaatggtaagttttatatgaaaagttatgtaatgaatacattgaaaattgtaacagtt 9719059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 35731401 - 35731328
Alignment:
Q  42 actctttaagcattttaaataataagtt-tttatgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    |||||||||||| ||||| || |||||| ||||| ||||||| |||||| | || |||||||||||||||||||    
T  35731401 actctttaagcactttaattagtaagttctttataaaaagttgtgtattaagtgcattggaaattgtaatagtt 35731328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 39320974 - 39321047
Alignment:
Q  42 actctttaagcattttaaataataagttttt-atgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    |||||||||||| ||||| || ||||||||| || ||||||| ||||||||||  |||| ||||||||||||||    
T  39320974 actctttaagcactttaattagtaagttttttattaaaagttgtgtattgaatacattgaaaattgtaatagtt 39321047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 99
Target Start/End: Original strand, 48488172 - 48488228
Alignment:
Q  44 tctttaagcattttaaataataagttttt-atgaaaagttatgtattgaatgtattg 99  Q
    |||||||||| ||||||| |||||||||| ||||||||||||||||| |||| ||||    
T  48488172 tctttaagcactttaaatgataagtttttaatgaaaagttatgtattcaatgcattg 48488228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 114
Target Start/End: Original strand, 35496531 - 35496638
Alignment:
Q  8 tttaaaggaaaatattaacgagtgttacaggggtactctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattg 106  Q
    ||||| || |||| ||||||||||   | |||| ||||||||| || |||||||  |||||||||| |||||| || |||| |||||| |||| ||||||    
T  35496531 tttaatgggaaatgttaacgagtgcccccggggcactctttaaacactttaaatggtaagtttttaatgaaaaattgtgtaatgaatgcattgaaaattg 35496630  T
Q  107 taatagtt 114  Q
    ||||||||    
T  35496631 taatagtt 35496638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 114
Target Start/End: Original strand, 14651377 - 14651455
Alignment:
Q  37 ggggtactctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    |||| |||||||||||| || ||||| || ||||||| ||||||||| |||| ||| || |||||||||||||| ||||    
T  14651377 ggggcactctttaagcacttaaaatagtaggtttttaatgaaaagttgtgtaatgattgcattggaaattgtaacagtt 14651455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 27337784 - 27337738
Alignment:
Q  68 tttttatgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    ||||||||||||||| |||||| ||||||||| ||| ||||||||||    
T  27337784 tttttatgaaaagttgtgtatttaatgtattgtaaactgtaatagtt 27337738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 3e-24; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 44 - 194
Target Start/End: Original strand, 19890183 - 19890333
Alignment:
Q  44 tctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaaat 142  Q
    |||||||||| || |||||||||||||||| ||||||||| |||||| |||| ||||||||||||||||||| |       |||||||||||||||||||    
T  19890183 tctttaagcacttaaaataataagtttttaatgaaaagttgtgtattaaatgcattggaaattgtaatagttga-ctttttaaaagaataattactaaat 19890281  T
Q  143 ttaggatgcttaaagaatactccaaagacactcgttaaaaagaccataattt 194  Q
    |||||||||||||| | ||| ||  | ||||||||||| || ||| ||||||    
T  19890282 ttaggatgcttaaatagtaccccggaaacactcgttaacaaaaccctaattt 19890333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 13 - 187
Target Start/End: Original strand, 1334847 - 1335021
Alignment:
Q  13 aggaaaatattaacgagtgttacaggggtactctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaata 111  Q
    |||||||| ||||||| |||  | || | |||||||||||| ||||||| ||||||||||| |||||| || | ||||||||| ||||||||||||||||    
T  1334847 aggaaaatgttaacgattgtccccggagcactctttaagcactttaaatgataagtttttaatgaaaaattgtatattgaatgcattggaaattgtaata 1334946  T
Q  112 gttaannnnnnnaaaagaataattactaaatttaggatgcttaaagaatactccaaagacactcgttaaaaagacc 187  Q
    ||| |        |||||||||||| ||||||| ||||||||||||| | | ||  ||| ||||||||| ||||||    
T  1334947 gttgattttttt-aaagaataattattaaatttgggatgcttaaagagtgccccggagatactcgttaacaagacc 1335021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 42 - 180
Target Start/End: Original strand, 9448946 - 9449083
Alignment:
Q  42 actctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaa 140  Q
    ||||||||| || |||||||  |||||||||| ||||||||| |||||||||||||||| ||||| |||||||| |       |||||||||||||||||    
T  9448946 actctttaaacactttaaatggtaagtttttaatgaaaagttgtgtattgaatgtattgaaaattataatagttga--tttttaaaagaataattactaa 9449043  T
Q  141 atttaggatgcttaaagaatactccaaagacactcgttaa 180  Q
    ||||  | |||||||||| | | || |||||| |||||||    
T  9449044 atttgagttgcttaaagagtgccccgaagacattcgttaa 9449083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 14295718 - 14295624
Alignment:
Q  65 aagtttttatgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaaatttaggatgcttaaagaat 160  Q
    |||||||||| ||||||| |||||| |||| |||| ||||||||||||||||       ||||||||||||||||||||| |||| ||||||||||    
T  14295718 aagtttttataaaaagttgtgtattcaatgcattgaaaattgtaatagttaa-ccttttaaaagaataattactaaatttgggattcttaaagaat 14295624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 46 - 158
Target Start/End: Original strand, 31452343 - 31452454
Alignment:
Q  46 tttaagcattttaaataataagtttttatgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaaattta 145  Q
    |||||||| |||||||| ||||||||||  ||||||| ||||||||||| |||| |||||||||| ||| |       |||||||||||||||||| ||     
T  31452343 tttaagcactttaaatagtaagtttttaataaaagttgtgtattgaatgcattgaaaattgtaattgttga-ctttttaaaagaataattactaaacttg 31452441  T
Q  146 ggatgcttaaaga 158  Q
    ||||| |||||||    
T  31452442 ggatgtttaaaga 31452454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 109
Target Start/End: Original strand, 33074868 - 33074933
Alignment:
Q  44 tctttaagcattttaaataataagtttttatgaaaagttatgtattgaatgtattggaaattgtaa 109  Q
    |||||||| | ||||||| |||||||||||| ||||||| |||||| |||||||| ||||||||||    
T  33074868 tctttaagtactttaaattataagtttttattaaaagttgtgtatttaatgtattagaaattgtaa 33074933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 13538509 - 13538445
Alignment:
Q  42 actctttaagcattttaaataataagtttttatgaaaagttatgtattgaatgtattggaaattg 106  Q
    ||||||||||  | ||||||| ||| |||||||||||||||||||||| |||| |||||||||||    
T  13538509 actctttaagggtcttaaatagtaactttttatgaaaagttatgtattcaatgcattggaaattg 13538445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 15505692 - 15505585
Alignment:
Q  8 tttaaaggaaaatattaacgagtgttacaggggtactctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattg 106  Q
    |||| |||||||| |||||||||||  | | || |||||| || || |||||||| |||||||  | ||||||||| |||||||||||||||| |||||     
T  15505692 tttataggaaaatgttaacgagtgtctctgtggcactcttgaaacactttaaatagtaagtttggaatgaaaagttgtgtattgaatgtattgaaaatta 15505593  T
Q  107 taatagtt 114  Q
    ||||||||    
T  15505592 taatagtt 15505585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 46 - 187
Target Start/End: Complemental strand, 20065020 - 20064880
Alignment:
Q  46 tttaagcattttaaataataagtttttatgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaaattta 145  Q
    |||||||| ||||||||  ||| ||||||||||| || |||||| |||  |||| |||||||||||||| |       |||||||||||||||| |||||    
T  20065020 tttaagcactttaaatagaaaggttttatgaaaaattgtgtatttaatacattgaaaattgtaatagttga-ctttttaaaagaataattactatattta 20064922  T
Q  146 ggatgcttaaagaatactccaaagacactcgttaaaaagacc 187  Q
    |||| |||||||| | | | | || |||||||||| ||||||    
T  20064921 ggatccttaaagagtgccctagaggcactcgttaacaagacc 20064880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 114
Target Start/End: Original strand, 11944888 - 11944938
Alignment:
Q  64 taagtttttatgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    ||||||||||||||||||| |||||| |||| |||| ||||||||||||||    
T  11944888 taagtttttatgaaaagttgtgtattcaatgcattgaaaattgtaatagtt 11944938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 41933273 - 41933172
Alignment:
Q  14 ggaaaatattaacgagtgttacaggggtactctttaagcattttaaataat-aagtttttatgaaaagttatgtattgaatgtattggaaattgtaatag 112  Q
    |||||||||||||||||||| | || | |||||||||||| ||||| || | || ||||||| ||||||| | || ||| || |||| ||||||||||||    
T  41933273 ggaaaatattaacgagtgttcccggagcactctttaagcactttaattagtaaattttttataaaaagttgtttactgagtgcattgaaaattgtaatag 41933174  T
Q  113 tt 114  Q
    ||    
T  41933173 tt 41933172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 180
Target Start/End: Complemental strand, 37993190 - 37993054
Alignment:
Q  44 tctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaaat 142  Q
    ||||||| ||||||||||| ||| |||||| | |||| ||||||||| |||| |||| |||||||||||||| |        |||||||| ||| |||||    
T  37993190 tctttaaacattttaaatagtaaatttttaataaaaaattatgtattaaatgcattgaaaattgtaatagttgattttttg-aaagaatagttattaaat 37993092  T
Q  143 ttaggatgcttaaagaatactccaaagacactcgttaa 180  Q
    |||| ||| |||||||||   || ||||||||||||||    
T  37993091 ttagaatgtttaaagaatgtcccgaagacactcgttaa 37993054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 106
Target Start/End: Complemental strand, 41544091 - 41544027
Alignment:
Q  42 actctttaagcattttaaataataagtttttatgaaaagttatgtattgaatgtattggaaattg 106  Q
    ||||||||||  | ||||||||||| |||||||||||| ||||||||| | || |||||||||||    
T  41544091 actctttaagggtcttaaataataattttttatgaaaaattatgtattcattgcattggaaattg 41544027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 7673294 - 7673235
Alignment:
Q  56 ttaaataataagtttt-tatgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    |||||||||||||||| ||| ||||||| |||| | ||||||||| ||||||||||||||    
T  7673294 ttaaataataagttttatataaaaagttgtgtactaaatgtattgaaaattgtaatagtt 7673235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 14 - 51
Target Start/End: Complemental strand, 13082086 - 13082049
Alignment:
Q  14 ggaaaatattaacgagtgttacaggggtactctttaag 51  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  13082086 ggaaaatatcaacgagtgtttcaggggtactctttaag 13082049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 160
Target Start/End: Complemental strand, 5524493 - 5524457
Alignment:
Q  124 aaaagaataattactaaatttaggatgcttaaagaat 160  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  5524493 aaaaaaataattactatatttaggatgcttaaagaat 5524457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 33962936 - 33963000
Alignment:
Q  42 actctttaagcattttaaataataagtttttatgaaaagttatgtattgaatgtattggaaattg 106  Q
    |||||||||| | |||||||||||| |||||||||||| || || ||| |||| |||| ||||||    
T  33962936 actctttaaggactttaaataataaatttttatgaaaaattgtgcattcaatgcattgaaaattg 33963000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 17 - 187
Target Start/End: Original strand, 62492 - 62662
Alignment:
Q  17 aaatattaacgagtgttacaggggtactctttaagcattttaaataataagttttt-atgaaaagttatgtattgaatgtattggaaattgtaatagtta 115  Q
    |||| |||||||||||  | ||||||||||||||||| |||||||| ||||||||| || |||| |||||||||||||| |||| |||| |||||||||     
T  62492 aaatgttaacgagtgtctccggggtactctttaagcactttaaatagtaagtttttaataaaaaattatgtattgaatgcattgaaaatcgtaatagttg 62591  T
Q  116 annnnnnnaaaagaataattactaaatttaggatgcttaaagaatactccaaagacactcgttaaaaagacc 187  Q
    |       ||||||||||||||||||| |  |||||||||||| ||| |   ||||||||||||| ||||||    
T  62592 a-ctttttaaaagaataattactaaatatgagatgcttaaagagtaccctggagacactcgttaacaagacc 62662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 42 - 156
Target Start/End: Original strand, 1369851 - 1369965
Alignment:
Q  42 actctttaagcattttaaataataagtttt-tatgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaa 140  Q
    |||||||||||| ||||| ||||||||||| ||||||||||||| ||||||||| |||||||||||| |||||| |       |||||||||||| ||||    
T  1369851 actctttaagcactttaattaataagttttatatgaaaagttatctattgaatgcattggaaattgtgatagttga-ctttttaaaagaataattgctaa 1369949  T
Q  141 atttaggatgcttaaa 156  Q
    ||||||||||||||||    
T  1369950 atttaggatgcttaaa 1369965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 158
Target Start/End: Original strand, 4384128 - 4384243
Alignment:
Q  42 actctttaagcattttaaataataagtttttatgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaaa 141  Q
    |||||||||||| ||||||| |||| ||||||   |||||| ||||||||||| ||||||||||||||||||| |       ||||||||||||||||||    
T  4384128 actctttaagcactttaaatgataaatttttaatgaaagttgtgtattgaatgcattggaaattgtaatagttga-ttttttaaaagaataattactaaa 4384226  T
Q  142 tttaggatgcttaaaga 158  Q
    |||||| ||||||||||    
T  4384227 tttagggtgcttaaaga 4384243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 46 - 111
Target Start/End: Complemental strand, 35902041 - 35901975
Alignment:
Q  46 tttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaata 111  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||    
T  35902041 tttaagcattttaaataataagtttttaatgaaaagttctgtattgaatgcattggaaattgtaata 35901975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 12 - 158
Target Start/End: Original strand, 27801188 - 27801334
Alignment:
Q  12 aaggaaaatattaacgagtgttacaggggtactctttaagcattttaaataataagttttt-atgaaaagttatgtattgaatgtattggaaattgtaat 110  Q
    |||| |||| |||||||||| |   ||||||||||||||||| |||||||| ||||||||| || ||||||| |||| |||||| |||| ||||||||||    
T  27801188 aagggaaatgttaacgagtgctcttggggtactctttaagcactttaaatagtaagtttttaataaaaagttgtgtaatgaatgcattgaaaattgtaat 27801287  T
Q  111 agttaannnnnnnaaaagaataattactaaatttaggatgcttaaaga 158  Q
    |||| |       ||||||||||||||||||||||| ||| |||||||    
T  27801288 agttga-ctttttaaaagaataattactaaatttagaatgattaaaga 27801334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 42 - 187
Target Start/End: Complemental strand, 33013159 - 33013015
Alignment:
Q  42 actctttaagcattttaaataataagtt-tttatgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaa 140  Q
    |||||||||||| ||||| || |||||| ||||||||||||| |||||||| |  ||||||||||||||||||| |       ||||||||||||  |||    
T  33013159 actctttaagcactttaattagtaagttctttatgaaaagttgtgtattgagtacattggaaattgtaatagttga-ctttttaaaagaataattgttaa 33013061  T
Q  141 atttaggatgcttaaagaatactccaaagacactcgttaaaaagacc 187  Q
    |||| | ||||||||||| | ||| ||| ||||||||||| ||||||    
T  33013060 atttggtatgcttaaagagtcctcgaaa-acactcgttaacaagacc 33013015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 158
Target Start/End: Original strand, 37813423 - 37813511
Alignment:
Q  70 tttatgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaaatttaggatgcttaaaga 158  Q
    ||||||||||||| |||||| |||| ||||||||||||||| ||| |       ||||||||||||||||||||| |||| ||||||||    
T  37813423 tttatgaaaagttgtgtattcaatgcattggaaattgtaatggttgacttttttaaaagaataattactaaatttgggatccttaaaga 37813511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 17 - 114
Target Start/End: Original strand, 42636333 - 42636431
Alignment:
Q  17 aaatattaacgagtgttacaggggtactctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    |||| |||||||||| | | || | |||||||||||| |||||||  |||||||||| ||||||||| |||||| |||| |||| ||||||||||||||    
T  42636333 aaatgttaacgagtgctcccggagcactctttaagcactttaaatggtaagtttttaatgaaaagttgtgtattaaatgcattgtaaattgtaatagtt 42636431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 114
Target Start/End: Complemental strand, 28207711 - 28207665
Alignment:
Q  68 tttttatgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    |||| |||||||||| ||||||||||| |||||||||||||||||||    
T  28207711 ttttaatgaaaagttgtgtattgaatgcattggaaattgtaatagtt 28207665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 12684490 - 12684559
Alignment:
Q  46 tttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    |||||||| |||||||||||| |||||| | ||||||| |||| |||||| ||| |||||||||||||||    
T  12684490 tttaagcactttaaataataaatttttaattaaaagttttgtaatgaatgcattagaaattgtaatagtt 12684559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 33949542 - 33949615
Alignment:
Q  42 actctttaagcattttaaataataagtt-tttatgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    ||||||||| || ||||| || |||||| ||||||||||||| |||||||| || ||| |||||||||||||||    
T  33949542 actctttaaacactttaattagtaagttatttatgaaaagttgtgtattgagtgcatttgaaattgtaatagtt 33949615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 44960576 - 44960502
Alignment:
Q  42 actctttaagcattttaaataataagtttttatgaaaagttatgtattgaatgtattggaaattgtaatagttaa 116  Q
    |||||||||||| ||| |||| ||| |||||||||||| ||||||| | |||| |||| || |||||||| ||||    
T  44960576 actctttaagcacttttaatagtaaatttttatgaaaatttatgtaatcaatgcattgaaatttgtaatatttaa 44960502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 3520820 - 3520873
Alignment:
Q  62 aataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    |||||||||||| ||||||||||||||||||||| |||  ||| ||||||||||    
T  3520820 aataagtttttaatgaaaagttatgtattgaatgcattaaaaactgtaatagtt 3520873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 187
Target Start/End: Complemental strand, 30535032 - 30534987
Alignment:
Q  142 tttaggatgcttaaagaatactccaaagacactcgttaaaaagacc 187  Q
    ||||| ||||||||||| ||||||| ||||||||||||| ||||||    
T  30535032 tttagaatgcttaaagagtactccagagacactcgttaacaagacc 30534987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 106
Target Start/End: Complemental strand, 31265147 - 31265046
Alignment:
Q  5 taatttaaaggaaaatattaacgagtgttacaggggtactctttaagcattttaaataataagtttttatgaaaagttatgtattgaatgtattggaaat 104  Q
    ||||||||||| |||| |||||||||| | | |||| ||||||||||    | ||||| ||| |||||||||||| || |||||| |||  |||||||||    
T  31265147 taatttaaagggaaatgttaacgagtgctcccggggcactctttaagagcctaaaatagtaactttttatgaaaacttgtgtatttaatacattggaaat 31265048  T
Q  105 tg 106  Q
    ||    
T  31265047 tg 31265046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 24695856 - 24695788
Alignment:
Q  46 tttaagcattttaaataataagtttttatgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    ||||| || |||||||| |||||||| || ||||||| |||||| | || ||| |||||||||||||||    
T  24695856 tttaaacactttaaatagtaagttttaataaaaagttgtgtattcactgcattagaaattgtaatagtt 24695788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 32959788 - 32959856
Alignment:
Q  17 aaatattaacgagtgttacaggggtactctttaagcattttaaataataagtttttatgaaaagttatg 85  Q
    ||||||||||||||||    | || ||||||||||||| || |||| |||||||||||||||| |||||    
T  32959788 aaatattaacgagtgtccatgtggcactctttaagcatctttaatagtaagtttttatgaaaatttatg 32959856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 39691103 - 39691171
Alignment:
Q  38 gggtactctttaagcattttaaataataagtttttatgaaaagttatgtattgaatgtattggaaattg 106  Q
    ||||| |||||||| || ||||||| ||| |||||||||||| || |||||| |||| |||| ||||||    
T  39691103 gggtattctttaaggatcttaaatagtaattttttatgaaaatttgtgtattcaatgcattgaaaattg 39691171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0268 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0268
Description:

Target: scaffold0268; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 42 - 116
Target Start/End: Original strand, 20241 - 20315
Alignment:
Q  42 actctttaagcattttaaataataagtttttatgaaaagttatgtattgaatgtattggaaattgtaatagttaa 116  Q
    |||||||||||| ||||||| |||||||||||||||||||| |||||| |||| ||| |||||||||||||||||    
T  20241 actctttaagcactttaaatgataagtttttatgaaaagttgtgtatttaatgcatttgaaattgtaatagttaa 20315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 2e-19; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 42 - 114
Target Start/End: Complemental strand, 2864256 - 2864183
Alignment:
Q  42 actctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    |||||||||||| |||||||| |||||||||| ||||||||| ||||||||||| |||||||||||||||||||    
T  2864256 actctttaagcactttaaatagtaagtttttaatgaaaagttgtgtattgaatgcattggaaattgtaatagtt 2864183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 42 - 158
Target Start/End: Complemental strand, 39150696 - 39150580
Alignment:
Q  42 actctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaa 140  Q
    |||||||||||| ||||| || |||| ||||| |||||| |||||||||||||| |||| |||||||||||||| |       | |||||||||||||||    
T  39150696 actctttaagcactttaactagtaagattttaatgaaaatttatgtattgaatgcattgtaaattgtaatagttga-ctttttacaagaataattactaa 39150598  T
Q  141 atttaggatgcttaaaga 158  Q
    ||||||||||||||||||    
T  39150597 atttaggatgcttaaaga 39150580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 10 - 156
Target Start/End: Complemental strand, 44829417 - 44829272
Alignment:
Q  10 taaaggaaaatattaacgagtgttacaggggtactctttaagcattttaaataataagtttttatgaaaagttatgtattgaatgtattggaaattgtaa 109  Q
    |||||| ||||||||||||||||| | |||  |||||||||| | |||||    |||||||| || ||||||| |||||||||||||||  |||||||||    
T  44829417 taaagggaaatattaacgagtgtttccgggacactctttaagtactttaatcggtaagttttaataaaaagttgtgtattgaatgtattaaaaattgtaa 44829318  T
Q  110 tagttaannnnnnnaaaagaataattactaaatttaggatgcttaaa 156  Q
    ||||| |        |||||||||||||||||||| |||||||||||    
T  44829317 tagttgaccttttt-aaagaataattactaaatttgggatgcttaaa 44829272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 42 - 158
Target Start/End: Original strand, 43397007 - 43397125
Alignment:
Q  42 actctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaaga-ataattacta 139  Q
    |||| |||| || |||||||| |||||||||| ||||||||| |||||| |||| |||||||||| |||||||| |       |||| | ||||||||||    
T  43397007 actcgttaaacactttaaatagtaagtttttaatgaaaagttgtgtattaaatgcattggaaattataatagttgactttttaaaaatatataattacta 43397106  T
Q  140 aatttaggatgcttaaaga 158  Q
    |||||||||||||||||||    
T  43397107 aatttaggatgcttaaaga 43397125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 42 - 158
Target Start/End: Original strand, 47187813 - 47187929
Alignment:
Q  42 actctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaa 140  Q
    ||||||||| || || ||||  |||||||||| |||||| |||||||||||||| |||||||||| |||||||| |       ||| |||||||||||||    
T  47187813 actctttaaacacttaaaatggtaagtttttaatgaaaaattatgtattgaatgcattggaaattataatagttga-ttttttaaatgaataattactaa 47187911  T
Q  141 atttaggatgcttaaaga 158  Q
    |||| |||||||||||||    
T  47187912 atttgggatgcttaaaga 47187929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 41 - 114
Target Start/End: Original strand, 6883119 - 6883193
Alignment:
Q  41 tactctttaagcattttaaataataagtttt-tatgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    |||||||||| || ||||||| |||| |||| |||||||||||||||| |||||| ||| |||||||||||||||    
T  6883119 tactctttaaacactttaaatgataaattttatatgaaaagttatgtaatgaatgcatttgaaattgtaatagtt 6883193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 75 - 187
Target Start/End: Original strand, 26811258 - 26811368
Alignment:
Q  75 gaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaaatttaggatgcttaaagaatactccaaagacact 174  Q
    |||||||| | ||||| |||||||||||||| ||||||||||       ||||||||||||||||||| ||||||| |||||||||| |||   ||||||    
T  26811258 gaaaagttgtatattgtatgtattggaaattctaatagttaatttttt-aaaagaataattactaaatataggatgtttaaagaata-tcccgggacact 26811355  T
Q  175 cgttaaaaagacc 187  Q
    |||||| ||||||    
T  26811356 cgttaacaagacc 26811368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 48 - 187
Target Start/End: Original strand, 48022351 - 48022490
Alignment:
Q  48 taagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaaatttag 146  Q
    ||||||||||||||| |||||||||| | ||||  ||||||||||||| |||| |||||| |||||||||       |||| |||||||||||||| | |    
T  48022351 taagcattttaaatagtaagtttttaataaaaaaatatgtattgaatgcattgaaaattgcaatagttaa-ctttttaaaacaataattactaaatatgg 48022449  T
Q  147 gatgcttaaagaatactccaaagacactcgttaaaaagacc 187  Q
    |||||||||||| |||  ||  | |||||||||| ||||||    
T  48022450 gatgcttaaagagtaccacaggggcactcgttaacaagacc 48022490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 44 - 158
Target Start/End: Complemental strand, 8365615 - 8365501
Alignment:
Q  44 tctttaagcattttaaataataagtttttat-gaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaaat 142  Q
    ||||||| ||| ||||||| ||||||||||| ||||| | |||||||||||| |||| | |||||||||||| |       ||||||||||||| |||||    
T  8365615 tctttaaacatgttaaatagtaagtttttattgaaaaatgatgtattgaatgcattgaagattgtaatagttga-ttttttaaaagaataattattaaat 8365517  T
Q  143 ttaggatgcttaaaga 158  Q
    |||||||| |||||||    
T  8365516 ttaggatgtttaaaga 8365501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 42 - 158
Target Start/End: Original strand, 38748713 - 38748829
Alignment:
Q  42 actctttaagcattttaaataataagtt-tttatgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaa 140  Q
    |||||||||||| ||||| || |||||| ||||||||||||| |||||||| || |||| ||||| |||||||| |       |||||||||||| ||||    
T  38748713 actctttaagcactttaattagtaagttatttatgaaaagttgtgtattgagtgcattgaaaattataatagttga-ctttttaaaagaataatttctaa 38748811  T
Q  141 atttaggatgcttaaaga 158  Q
    |||| | |||||||||||    
T  38748812 atttggtatgcttaaaga 38748829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 124 - 158
Target Start/End: Complemental strand, 8794448 - 8794414
Alignment:
Q  124 aaaagaataattactaaatttaggatgcttaaaga 158  Q
    |||||||||||||||||||||||||||||||||||    
T  8794448 aaaagaataattactaaatttaggatgcttaaaga 8794414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 114
Target Start/End: Complemental strand, 31889305 - 31889203
Alignment:
Q  14 ggaaaatattaacgagtgttacaggggtactctttaagcattttaaataataagttttt-atg-aaaagttatgtattgaatgtattggaaattgtaata 111  Q
    ||||||| |||||||||||| |  | | ||||||||||||||||||||  ||||||||| ||| ||||||| |||||| |||| ||| ||||| ||||||    
T  31889305 ggaaaatgttaacgagtgtttctagtgcactctttaagcattttaaatggtaagtttttaatgaaaaagttgtgtattaaatgcattagaaatcgtaata 31889206  T
Q  112 gtt 114  Q
    |||    
T  31889205 gtt 31889203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 8 - 114
Target Start/End: Complemental strand, 3982412 - 3982306
Alignment:
Q  8 tttaaaggaaaatattaacgagtgttacaggggtactctttaagcattttaaataataagtttttatgaaaagttatgtattgaatgtattggaaattgt 107  Q
    |||||||| |||| |||||||||||  | || | ||||||||| || |||||||| ||| ||||||| ||||||| | |||| |||| |||  ||||| |    
T  3982412 tttaaagggaaatgttaacgagtgtctccggtgcactctttaaacactttaaatagtaaatttttattaaaagttgtctattcaatgcattataaattat 3982313  T
Q  108 aatagtt 114  Q
    |||||||    
T  3982312 aatagtt 3982306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 13 - 144
Target Start/End: Original strand, 18432916 - 18433047
Alignment:
Q  13 aggaaaatattaacgagtgttacaggggtactctttaagcattttaaataataagtt-tttatgaaaagttatgtattgaatgtattggaaattgtaata 111  Q
    ||||||||||||||||||||  | | |||| |||||||||  |||||||| ||| || || |||||||||| | ||||||||  |||  ||||||||| |    
T  18432916 aggaaaatattaacgagtgtccctgaggtaatctttaagccgtttaaatattaaattcttaatgaaaagttgtatattgaatacattaaaaattgtaaca 18433015  T
Q  112 gttaannnnnnnaaaagaataattactaaattt 144  Q
    |||||       |||||||||||||||||||||    
T  18433016 gttaa-cattttaaaagaataattactaaattt 18433047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 45640660 - 45640591
Alignment:
Q  42 actctttaagcattttaaataataagttttt-atgaaaagttatgtattgaatgtattggaaattgtaata 111  Q
    ||||||||||||||||||||| ||||||||| ||||||| || |||| |||||| |||| ||||| |||||    
T  45640660 actctttaagcattttaaatagtaagtttttgatgaaaa-ttgtgtaatgaatgcattgaaaattataata 45640591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 185
Target Start/End: Complemental strand, 39973924 - 39973863
Alignment:
Q  124 aaaagaataattactaaatttaggatgcttaaagaatactccaaagacactcgttaaaaaga 185  Q
    ||||||||||||||| ||||||| ||||||||||| | | ||  ||||||||||||| ||||    
T  39973924 aaaagaataattacttaatttagcatgcttaaagagtgccccggagacactcgttaacaaga 39973863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 156
Target Start/End: Complemental strand, 8043912 - 8043880
Alignment:
Q  124 aaaagaataattactaaatttaggatgcttaaa 156  Q
    ||||||||||||| |||||||||||||||||||    
T  8043912 aaaagaataattattaaatttaggatgcttaaa 8043880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 108
Target Start/End: Original strand, 14579446 - 14579490
Alignment:
Q  64 taagtttttatgaaaagttatgtattgaatgtattggaaattgta 108  Q
    |||||||||||||||||||||||||| | ||||||  ||||||||    
T  14579446 taagtttttatgaaaagttatgtatttattgtattaaaaattgta 14579490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 46 - 114
Target Start/End: Original strand, 32562350 - 32562418
Alignment:
Q  46 tttaagcattttaaataataagtttttatgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    ||||| || |||||||| ||||||||||| |||| || |||||| | || |||| ||||||||||||||    
T  32562350 tttaaacactttaaatagtaagtttttataaaaaattgtgtattcactgcattgaaaattgtaatagtt 32562418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 47 - 98
Target Start/End: Complemental strand, 41019608 - 41019556
Alignment:
Q  47 ttaagcattttaaataataagtttttatgaaaag-ttatgtattgaatgtatt 98  Q
    |||||||| ||||||| ||| ||||||||||||| ||||||||| ||||||||    
T  41019608 ttaagcatcttaaatagtaattttttatgaaaagtttatgtattcaatgtatt 41019556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 1210 - 1063
Alignment:
Q  11 aaaggaaaatattaacgagtgttacaggggtactctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaa 109  Q
    |||| ||||| ||||||||||   | ||| || ||||||| |||||||||||| ||||||||| |||||| || ||||||||||| |||||||||| |||    
T  1210 aaagaaaaatgttaacgagtgcctccgggatattctttaaacattttaaataacaagtttttaatgaaaaattttgtattgaatgcattggaaattataa 1111  T
Q  110 tagttaannnnnnnaaaagaataattactaaatttaggatgcttaaaga 158  Q
    ||||| |       ||||||||||||||||| |||| ||||||||||||    
T  1110 tagttga-tttttcaaaagaataattactaattttatgatgcttaaaga 1063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 11 - 158
Target Start/End: Complemental strand, 28874544 - 28874397
Alignment:
Q  11 aaaggaaaatattaacgagtgttacaggggtactctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaa 109  Q
    |||| ||||| ||||||||||   | ||| || ||||||| |||||||||||| ||||||||| |||||| || ||||||||||| |||||||||| |||    
T  28874544 aaagaaaaatgttaacgagtgcctccgggatattctttaaacattttaaataacaagtttttaatgaaaaattttgtattgaatgcattggaaattataa 28874445  T
Q  110 tagttaannnnnnnaaaagaataattactaaatttaggatgcttaaaga 158  Q
    ||||| |       ||||||||||||||||| |||| ||||||||||||    
T  28874444 tagttga-tttttcaaaagaataattactaattttatgatgcttaaaga 28874397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 41 - 114
Target Start/End: Complemental strand, 31855169 - 31855095
Alignment:
Q  41 tactctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    ||||||||||||| |||||||| |||||||||| |||||| || | ||||||||| |||||||||||||||||||    
T  31855169 tactctttaagcactttaaatagtaagtttttaatgaaaaattgtatattgaatgcattggaaattgtaatagtt 31855095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 111
Target Start/End: Complemental strand, 32823791 - 32823721
Alignment:
Q  42 actctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaata 111  Q
    |||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||| |||| |||||||||||    
T  32823791 actctttaagcactttaaataacaagtttttaatgaaaagttgtgtattgaatgcattgaaaattgtaata 32823721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 40 - 158
Target Start/End: Complemental strand, 1841099 - 1840981
Alignment:
Q  40 gtactctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattact 138  Q
    |||||||||||   |||||||| ||||||||||| | ||||||| ||||||||||| ||||||||||||||||||| |       ||||||||||||| |    
T  1841099 gtactctttaaatcttttaaatgataagtttttaattaaaagttgtgtattgaatgcattggaaattgtaatagttga-ttttttaaaagaataattatt 1841001  T
Q  139 aaatttaggatgcttaaaga 158  Q
    |||||||  |||||||||||    
T  1841000 aaatttaatatgcttaaaga 1840981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 180
Target Start/End: Complemental strand, 30739709 - 30739575
Alignment:
Q  46 tttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaaattt 144  Q
    ||||||||||| |||| |||| |||||| |||||| || ||||||||||| ||||||||| |||  ||||||       || ||||||||||||||||||    
T  30739709 tttaagcatttaaaatgataaatttttaatgaaaaattgtgtattgaatgcattggaaatcgtaccagttaacttttt-aatagaataattactaaattt 30739611  T
Q  145 aggatgcttaaagaatactccaaagacactcgttaa 180  Q
    || || |||||||| | | || ||||||||||||||    
T  30739610 agaatacttaaagagtgccccgaagacactcgttaa 30739575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 158
Target Start/End: Complemental strand, 3766383 - 3766275
Alignment:
Q  50 agcattttaaataataagtttt-tatgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaaatttagga 148  Q
    |||| ||||||| ||||||||| |||||||||||||||| ||||||||||  ||||||||||| || |       |||||||||||| | |||||| |||    
T  3766383 agcactttaaatgataagttttatatgaaaagttatgtaatgaatgtattataaattgtaataattga-ctttttaaaagaataatttccaaatttggga 3766285  T
Q  149 tgcttaaaga 158  Q
    ||||||||||    
T  3766284 tgcttaaaga 3766275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 2864991 - 2864916
Alignment:
Q  42 actctttaagcattttaaataataagttttt--atgaaaagttatgtattgaatgtattggaaattgtaatagtta 115  Q
    ||||||||| ||||||||||  |||||||||  ||||||| || |||||| |||| |||| |||||||||||||||    
T  2864991 actctttaaacattttaaatggtaagttttttgatgaaaaattgtgtatttaatgcattgtaaattgtaatagtta 2864916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 116
Target Start/End: Complemental strand, 3443966 - 3443905
Alignment:
Q  55 tttaaataataagtttttatgaaaagttatgtattgaatgtattggaaattgtaatagttaa 116  Q
    ||||| ||| |||||||||||| || |||||||| |||||| ||| ||||||||||| ||||    
T  3443966 tttaattaaaaagtttttatgagaatttatgtatagaatgtcttgaaaattgtaatatttaa 3443905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 17215675 - 17215748
Alignment:
Q  42 actctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    |||||||||||| |||||||  |||||||||| | |||| || | ||||||||| |||| ||||||||||||||    
T  17215675 actctttaagcactttaaatggtaagtttttaataaaaaattgtttattgaatgcattgaaaattgtaatagtt 17215748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 115
Target Start/End: Complemental strand, 2884204 - 2884127
Alignment:
Q  42 actctttaagcattttaaataataagttttt----atgaaaagttatgtattgaatgtattggaaattgtaatagtta 115  Q
    ||||||||| ||||||||||  |||||||||    ||||||| || |||||| |||| |||| |||||||||||||||    
T  2884204 actctttaaacattttaaatggtaagtttttttttatgaaaaattgtgtatttaatgcattgtaaattgtaatagtta 2884127  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 7421812 - 7421716
Alignment:
Q  16 aaaatattaacgagtgttacaggggtactctttaagcattttaaataataagtttttatgaaaa-gttatgtattgaatgtattggaaattgtaata 111  Q
    ||||| |||||||||||| | | |  |||||||||||| |||||||| |||  |||||| |||| ||| |||||| |||| |||| |||||||||||    
T  7421812 aaaatgttaacgagtgttcctgtgacactctttaagcactttaaatagtaaagttttattaaaaagttgtgtattaaatgcattgaaaattgtaata 7421716  T

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Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 44 - 111
Target Start/End: Complemental strand, 30801853 - 30801785
Alignment:
Q  44 tctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaata 111  Q
    |||||||||| ||||||||  ||||||||| | ||||||| ||||||||||| |||| ||||| |||||    
T  30801853 tctttaagcactttaaatagcaagtttttaattaaaagttgtgtattgaatgcattgaaaattataata 30801785  T

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Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 180
Target Start/End: Original strand, 34235480 - 34235536
Alignment:
Q  124 aaaagaataattactaaatttaggatgcttaaagaatactccaaagacactcgttaa 180  Q
    |||||||||||||||||||||| |||| ||||| ||||| ||| | | |||||||||    
T  34235480 aaaagaataattactaaatttatgatgtttaaaaaataccccagacatactcgttaa 34235536  T

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Target: chr3 (Bit Score: 44; Significance: 6e-16; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 29083890 - 29084010
Alignment:
Q  41 tactctttaagcattttaaa-taataagtttttat-gaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattact 138  Q
    ||||||||||||| |||||| || ||||||||||| |||||||| |||||| |||| |||  ||||||||||||||||       |||||||||||||||    
T  29083890 tactctttaagcactttaaaatagtaagtttttattgaaaagttgtgtattaaatgcattaaaaattgtaatagttaa-ctttttaaaagaataattact 29083988  T
Q  139 aaatttaggatgcttaaagaat 160  Q
    || ||||||||| |||||||||    
T  29083989 aagtttaggatgattaaagaat 29084010  T

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Target: chr3; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 42 - 185
Target Start/End: Complemental strand, 51351391 - 51351248
Alignment:
Q  42 actctttaagcattttaaataataagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaa 140  Q
    |||||||||||| |||||| | |||||||||| |||||| || |||||| ||||||||||||||| |||||  |||       ||||||||||||| |||    
T  51351391 actctttaagcactttaaaaagtaagtttttaatgaaaaattgtgtattaaatgtattggaaattataata-ctaaactttttaaaagaataattattaa 51351293  T
Q  141 atttaggatgcttaaagaatactccaaagacactcgttaaaaaga 185  Q
    |||||| ||||||||| | || |||  ||||||||||||| ||||    
T  51351292 atttagaatgcttaaaaagtattccgcagacactcgttaacaaga 51351248  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 46 - 114
Target Start/End: Complemental strand, 16663086 - 16663018
Alignment:
Q  46 tttaagcattttaaataataagtttttatgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    ||||| || |||||||||||||||||||| ||||||| |||||| | || ||||| |||||||||||||    
T  16663086 tttaaacactttaaataataagtttttataaaaagttgtgtattcactgcattggtaattgtaatagtt 16663018  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 57 - 158
Target Start/End: Original strand, 42846012 - 42846114
Alignment:
Q  57 taaataataagttttta-tgaaaagttatgtattgaatgta-ttggaaattgtaatagttaannnnnnnaaaagaataattactaaatttaggatgctta 154  Q
    ||||| ||||||||||| ||||||||| ||||||||||| | ||| |||||| ||||||| |       ||| |||||||||||||||||||||||||||    
T  42846012 taaatgataagtttttaatgaaaagttgtgtattgaatgcaattgaaaattgaaatagttgactttttcaaa-gaataattactaaatttaggatgctta 42846110  T
Q  155 aaga 158  Q
    ||||    
T  42846111 aaga 42846114  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 24791588 - 24791493
Alignment:
Q  64 taagttttta-tgaaaagttatgtattgaatgtattggaaattgtaatagttaannnnnnnaaaagaataattactaaatttaggatgcttaaagaat 160  Q
    |||||||||| ||||||||||||||||||||  |||| |||||||||||||| |        |||||||||  |||||||||| ||||||||||||||    
T  24791588 taagtttttaatgaaaagttatgtattgaatacattgaaaattgtaatagttgacttttt--aaagaataacgactaaatttatgatgcttaaagaat 24791493  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 47 - 114
Target Start/End: Complemental strand, 40673543 - 40673475
Alignment:
Q  47 ttaagcattttaaataataagtttttat-gaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    ||||||| ||||||| |||||||||||  |||||||  |||||||||| |||| |||||||||||||||    
T  40673543 ttaagcactttaaatgataagtttttaaagaaaagtagtgtattgaatatattagaaattgtaatagtt 40673475  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 116
Target Start/End: Complemental strand, 47639006 - 47638934
Alignment:
Q  45 ctttaagcattttaaataataagtt-tttatgaaaagttatgtattgaatgtattggaaattgtaatagttaa 116  Q
    ||||||||||||||| || |||||| |||||||||| || |||||||| || |||  ||||||||||||||||    
T  47639006 ctttaagcattttaattagtaagttctttatgaaaaattgtgtattgagtgcattaaaaattgtaatagttaa 47638934  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 39551844 - 39551915
Alignment:
Q  38 gggtactctttaagcattttaaataataagtt-tttatgaaaagttatgtattgaatgtattggaaattgta 108  Q
    ||||||||||||| || ||||| || |||||| ||||||||||||| | |||||| ||||||| ||||||||    
T  39551844 gggtactctttaaacactttaattagtaagttctttatgaaaagttgtttattgagtgtattgaaaattgta 39551915  T

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Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 8 - 71
Target Start/End: Original strand, 46093519 - 46093582
Alignment:
Q  8 tttaaaggaaaatattaacgagtgttacaggggtactctttaagcattttaaataataagtttt 71  Q
    ||||||||||||| ||||||||||   | ||||||||||||||| | |||||||| ||||||||    
T  46093519 tttaaaggaaaatgttaacgagtgcctccggggtactctttaagaactttaaatagtaagtttt 46093582  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 116
Target Start/End: Complemental strand, 52249464 - 52249365
Alignment:
Q  18 aatattaacgagtgttacaggggtactctttaagcattttaaataataagtt-tttatgaaaagttatgtattgaatgtattggaaattgtaatagttaa 116  Q
    |||||||||||||| | | || | ||| |||||||| ||||| ||||||||| ||||  ||||||| | |||||||| |||| || ||||||||||||||    
T  52249464 aatattaacgagtgctcccggagcactttttaagcactttaattaataagttatttaaaaaaagttgtatattgaatatattagagattgtaatagttaa 52249365  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 42 - 114
Target Start/End: Original strand, 26900015 - 26900088
Alignment:
Q  42 actctttaagcattttaaataataagtttt-tatgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    ||||||||| || |||||||  ||| |||| |||||||||||||||| | |||| |||| ||||||||||||||    
T  26900015 actctttaaacactttaaatggtaaattttatatgaaaagttatgtaataaatgcattgaaaattgtaatagtt 26900088  T

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Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 185
Target Start/End: Complemental strand, 39977514 - 39977457
Alignment:
Q  128 gaataattactaaatttaggatgcttaaagaatactccaaagacactcgttaaaaaga 185  Q
    |||||||| |||  ||| ||||||||||||||||||||||| | ||||||||| ||||    
T  39977514 gaataatttctatttttgggatgcttaaagaatactccaaaaatactcgttaataaga 39977457  T

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Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 39 - 87
Target Start/End: Complemental strand, 25753601 - 25753553
Alignment:
Q  39 ggtactctttaagcattttaaataataagtttttatgaaaagttatgta 87  Q
    |||||||||||||||  || |||| |||||||||||||||| |||||||    
T  25753601 ggtactctttaagcacctttaatagtaagtttttatgaaaatttatgta 25753553  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 42 - 106
Target Start/End: Original strand, 46547773 - 46547837
Alignment:
Q  42 actctttaagcattttaaataataagtttttatgaaaagttatgtattgaatgtattggaaattg 106  Q
    ||||||||||  | ||| ||| ||| |||||||||||| ||||||||| |||| |||||||||||    
T  46547773 actctttaagggtcttatatagtaattttttatgaaaaattatgtattcaatgcattggaaattg 46547837  T

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Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 114
Target Start/End: Original strand, 52638171 - 52638223
Alignment:
Q  62 aataagtttttatgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    ||||||||||||| |||| || |||||| | || |||||||||||||||||||    
T  52638171 aataagtttttataaaaaattgtgtattcactgcattggaaattgtaatagtt 52638223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1444 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 114
Target Start/End: Original strand, 1723 - 1769
Alignment:
Q  68 tttttatgaaaagttatgtattgaatgtattggaaattgtaatagtt 114  Q
    ||||||||||||||| || ||| |||| |||||||||||||||||||    
T  1723 tttttatgaaaagttgtgcattcaatgcattggaaattgtaatagtt 1769  T

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Target: scaffold0003 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 111
Target Start/End: Original strand, 103641 - 103711
Alignment:
Q  42 actctttaagcattttaaataataagttttt-atgaaaagttatgtattgaatgtattggaaattgtaata 111  Q
    ||||||||||||||| ||||||||| ||||| ||||||| || | ||||||||| |||  |||||||||||    
T  103641 actctttaagcatttaaaataataaatttttaatgaaaaattgtatattgaatgcattaaaaattgtaata 103711  T

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