View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1771_low_17 (Length: 384)
Name: NF1771_low_17
Description: NF1771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1771_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 9 - 365
Target Start/End: Original strand, 43984285 - 43984641
Alignment:
| Q |
9 |
agcagagaaatgaccaaaattagtaannnnnnnngcaccgagagctataataaactatgaagtatggcttaacttacaatacttgtgagtcatgctaatt |
108 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43984285 |
agcaaagaaatgaccaaaattagtaattttttttgcaccgagagctataataaactatgaagtatggcttaacttacaatacttgtgagtcatgctaatt |
43984384 |
T |
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| Q |
109 |
agctccaaacacttgattagcacacaagtatacacatgcatgatagtactgctacaatatatgcaacagagttttaccaaatgaactcaattgagttttc |
208 |
Q |
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| T |
43984385 |
agctccaaacacttgattagcacacaagtatacacatgcatgatagtactgttacaatatatgcaacagagttttaccaaatgaactcaattgagttttc |
43984484 |
T |
|
| Q |
209 |
ccaatgatcagaaacttccaaccaacttagaattctatacgatacttagatgttcaatcaatgccacaccatttccacatagaattggaacataatttaa |
308 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43984485 |
ccaatgatcagaaacttgcaaccaacttagaattctatacgatacttagatgttcaatcaatgccacaccatttccacatagaattggaacataatttaa |
43984584 |
T |
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| Q |
309 |
cactcctcttttaaataaattcgcttttgtataaatcctatttttaaatagtctcaa |
365 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43984585 |
cactcctcttttaaataaattcgcttttgtataaatcctatttttaaatagtctcaa |
43984641 |
T |
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