View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1771_low_18 (Length: 381)

Name: NF1771_low_18
Description: NF1771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1771_low_18
NF1771_low_18
[»] chr5 (5 HSPs)
chr5 (10-283)||(16984241-16984504)
chr5 (284-366)||(28553191-28553273)
chr5 (284-366)||(28561108-28561190)
chr5 (284-363)||(28549010-28549089)
chr5 (284-359)||(28556194-28556269)
[»] chr4 (2 HSPs)
chr4 (231-283)||(45420431-45420483)
chr4 (103-147)||(53709234-53709278)
[»] chr8 (1 HSPs)
chr8 (103-147)||(26382397-26382441)
[»] chr7 (3 HSPs)
chr7 (103-147)||(5634014-5634058)
chr7 (103-147)||(11568627-11568671)
chr7 (103-147)||(18806466-18806510)
[»] chr1 (1 HSPs)
chr1 (103-147)||(5211937-5211981)
[»] chr6 (1 HSPs)
chr6 (103-147)||(19111417-19111461)


Alignment Details
Target: chr5 (Bit Score: 133; Significance: 5e-69; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 10 - 283
Target Start/End: Complemental strand, 16984504 - 16984241
Alignment:
Q  10 ataatactcaccattgtcttccttcatccacacaagtggatcttcttgtactaaagggtatataaaggcgtgttggtaatatgcttcacagtctgttgat 109  Q
    |||||||||| |||||||||||||||||||||||||| | |||||||||| | || ||| ||  |||||||||| |||||||| ||||       |||||    
T  16984504 ataatactcaacattgtcttccttcatccacacaagtcggtcttcttgtattgaaaggtgta--aaggcgtgttagtaatatgattca-------ttgat 16984414  T
Q  110 caaaaatcgaatgtaagaaaggaatattccaagctttatcatctgaaagattacagtctcatactcgaagctctgctagagtggaaattccattacattg 209  Q
    ||||| | ||||||||||||||||| ||||||||||||||||||| |||| |||||||| ||||||||||||||||||||| ||||||||||||| ||||    
T  16984413 caaaatttgaatgtaagaaaggaatgttccaagctttatcatctggaagaatacagtctgatactcgaagctctgctagaggggaaattccattatattg 16984314  T
Q  210 ttgagtaacgaaactattatcagagatccatatgttgttccaaaccggtatagagaacccatcaccaatcttcc 283  Q
    | |||||| |||||||||||||||| || |  |||||||||||| | |||||||||||||||||||||||||||    
T  16984313 tggagtaaggaaactattatcagag-tctagttgttgttccaaatcagtatagagaacccatcaccaatcttcc 16984241  T

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Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 284 - 366
Target Start/End: Complemental strand, 28553273 - 28553191
Alignment:
Q  284 tataggaaaatgtatttcgatggttttcattgcatatgtgatgtctgtgatatacatctgttacaacagtatatcaggaaact 366  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  28553273 tataggaaaatgtatttcgatcgttttcattgcatatgtgatgtctgtaatatacatctattacaacagtatatcaggaaact 28553191  T

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Target: chr5; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 284 - 366
Target Start/End: Complemental strand, 28561190 - 28561108
Alignment:
Q  284 tataggaaaatgtatttcgatggttttcattgcatatgtgatgtctgtgatatacatctgttacaacagtatatcaggaaact 366  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  28561190 tataggaaaatgtatttcgatcgttttcattgcatatgtgatgtctgtaatatacatctattacaacagtatatcaggaaact 28561108  T

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Target: chr5; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 284 - 363
Target Start/End: Complemental strand, 28549089 - 28549010
Alignment:
Q  284 tataggaaaatgtatttcgatggttttcattgcatatgtgatgtctgtgatatacatctgttacaacagtatatcaggaa 363  Q
    ||||||||||||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  28549089 tataggaaaatgtatttcgatcgttttcattgcatatgtgatgtttgtaatatacatctgttacaacagtatatcaggaa 28549010  T

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Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 284 - 359
Target Start/End: Complemental strand, 28556269 - 28556194
Alignment:
Q  284 tataggaaaatgtatttcgatggttttcattgcatatgtgatgtctgtgatatacatctgttacaacagtatatca 359  Q
    ||||||||||||||||| ||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||    
T  28556269 tataggaaaatgtattttgatcgttttcattgcatatgtgatgtatgtaatatacatctgttacaacagtatatca 28556194  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 231 - 283
Target Start/End: Complemental strand, 45420483 - 45420431
Alignment:
Q  231 agagatccatatgttgttccaaaccggtatagagaacccatcaccaatcttcc 283  Q
    ||||||||||||||| |||||||||||||||||| |||| || ||||||||||    
T  45420483 agagatccatatgttattccaaaccggtatagaggacccgtctccaatcttcc 45420431  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 53709234 - 53709278
Alignment:
Q  103 tgttgatcaaaaatcgaatgtaagaaaggaatattccaagcttta 147  Q
    ||||||| |||||| ||| |||||||||||| |||||||||||||    
T  53709234 tgttgataaaaaatagaaagtaagaaaggaacattccaagcttta 53709278  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 26382397 - 26382441
Alignment:
Q  103 tgttgatcaaaaatcgaatgtaagaaaggaatattccaagcttta 147  Q
    |||||||||||||| ||| |||||||||||| |||||||||||||    
T  26382397 tgttgatcaaaaatagaaagtaagaaaggaacattccaagcttta 26382441  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 5634058 - 5634014
Alignment:
Q  103 tgttgatcaaaaatcgaatgtaagaaaggaatattccaagcttta 147  Q
    |||||||||||||| ||| |||||||||||| |||||||||||||    
T  5634058 tgttgatcaaaaatagaaagtaagaaaggaacattccaagcttta 5634014  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 11568627 - 11568671
Alignment:
Q  103 tgttgatcaaaaatcgaatgtaagaaaggaatattccaagcttta 147  Q
    |||||||||||||| ||| |||||||||||| |||||||||||||    
T  11568627 tgttgatcaaaaatagaaagtaagaaaggaacattccaagcttta 11568671  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 147
Target Start/End: Complemental strand, 18806510 - 18806466
Alignment:
Q  103 tgttgatcaaaaatcgaatgtaagaaaggaatattccaagcttta 147  Q
    |||||||||||||| ||| |||||||||||| ||||||| |||||    
T  18806510 tgttgatcaaaaattgaaagtaagaaaggaacattccaaacttta 18806466  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 5211937 - 5211981
Alignment:
Q  103 tgttgatcaaaaatcgaatgtaagaaaggaatattccaagcttta 147  Q
    |||||||||||||| ||| |||||||||||| |||||||||||||    
T  5211937 tgttgatcaaaaatagaaagtaagaaaggaacattccaagcttta 5211981  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 147
Target Start/End: Original strand, 19111417 - 19111461
Alignment:
Q  103 tgttgatcaaaaatcgaatgtaagaaaggaatattccaagcttta 147  Q
    |||||||||||||| ||| |||||||||||| ||| |||||||||    
T  19111417 tgttgatcaaaaatagaaagtaagaaaggaacattacaagcttta 19111461  T

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