View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1771_low_21 (Length: 341)
Name: NF1771_low_21
Description: NF1771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1771_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 108; Significance: 3e-54; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 157 - 268
Target Start/End: Complemental strand, 32805349 - 32805238
Alignment:
| Q |
157 |
ctaagggagagattcatggaaaatgtgccttattgtcgggccttttatttttaaattttaaacgaccttcttgaatcatgtcccttaaaagaaaacattc |
256 |
Q |
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| T |
32805349 |
ctaagggagagattcatggaaaatgtgccttattgtcgggcattttatttttaaattttaaacgaccttcttgaatcatgtcccttaaaagaaaacattc |
32805250 |
T |
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| Q |
257 |
atcagtgttgtt |
268 |
Q |
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|||||||||||| |
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| T |
32805249 |
atcagtgttgtt |
32805238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 32805545 - 32805444
Alignment:
| Q |
1 |
actagttcgtgtgcttgtaacgattaaaattttgggttgtgccaaagtttagtatgaaatatttgccttaactttgttacgtatttccaaaatataggcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32805545 |
actagttcgtgtgcttgtaacgattaaaattttgggttgtgccaaagtttagtacgaaatatttgccttaactttgttacgtatttccaaaatataggcc |
32805446 |
T |
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| Q |
101 |
at |
102 |
Q |
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|| |
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| T |
32805445 |
at |
32805444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 280 - 341
Target Start/End: Complemental strand, 32805253 - 32805192
Alignment:
| Q |
280 |
attcatcagtgttgttgaaaacctttcatgttagaaacctaggatcatctgacaatttttgt |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32805253 |
attcatcagtgttgttgaaaacctttcatgttagaaacctaggatcatctgacaatttttgt |
32805192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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