View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1771_low_24 (Length: 282)
Name: NF1771_low_24
Description: NF1771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1771_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 6816387 - 6816631
Alignment:
| Q |
1 |
gatgtgaagagtgtagtcaaccctacaagaagccttcttggtaagtccacaacaaaatctttttcttcaaaccgagatgtgagtatcgnnnnnnncgaaa |
100 |
Q |
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| T |
6816387 |
gatgtgaagagtgtagtcaaccctacaagaagccttcttggtaagtccacaacaaaatctttttcttcaaacctagatgtgagtatcgaaagaaacgaaa |
6816486 |
T |
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| Q |
101 |
caagggctgtgacagagaagcaaagtgcaacaagtgatgctgcagcatagagtttgaaagcaggttcttttataaatagtggtataccattattttgatt |
200 |
Q |
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| T |
6816487 |
caagagctgtgacagagaagcaaagtgcaacaagtgatgctgcagcatagagtttgtaagcaggttctttcataaatagtggtataccattattttgatt |
6816586 |
T |
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| Q |
201 |
aggaccacctgggatagctgttgaggttgagaatgcaacagctgc |
245 |
Q |
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| T |
6816587 |
aggaccacctgggatagatgttgaggttgtgaatgcaacagctgc |
6816631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 6830815 - 6831055
Alignment:
| Q |
1 |
gatgtgaagagtgtagtcaaccctacaagaagccttcttggtaagtccacaacaaaatctttttcttcaaaccgagatgtgagtatcgnnnnnnncgaaa |
100 |
Q |
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| T |
6830815 |
gatgtgaagagtgtagtcaaccctacaagaagctttcttggtaagtcaataacaaaatctttttcttcaaaccgagatgtgagtatggaaagaaacaaaa |
6830914 |
T |
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| Q |
101 |
caagggctgtgacagagaagcaaagtgcaacaagtgatgctgcagcatagagtttgaaagcaggttcttttataaatagtggtataccattattttgatt |
200 |
Q |
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| T |
6830915 |
caagggctgtgacagaggagcaaagtgcaacaagtgatgctacagcatagagtttgaaagcaggcttttctagcagtagtggcataccggattcttgatc |
6831014 |
T |
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| Q |
201 |
aggaccacctgggatagctgttgaggttgagaatgcaacag |
241 |
Q |
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| T |
6831015 |
aggaccacctgggatagctgtcgaggttgtgaatgcaacag |
6831055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 6808426 - 6808662
Alignment:
| Q |
1 |
gatgtgaagagtgtagtcaaccctacaagaagccttcttggtaagtccacaacaaaatctttttcttcaaaccgagatgtgagtatcgnnnnnnncgaaa |
100 |
Q |
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||||||||||||||||||||||||| ||||||| || ||||||||||||||| |||||| ||||||| ||||||||| || ||||||| | || |
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| T |
6808426 |
gatgtgaagagtgtagtcaaccctagaagaagcttttttggtaagtccacaagaaaatccttttcttgaaaccgagacgttagtatcgaaagaaacataa |
6808525 |
T |
|
| Q |
101 |
caagggctgtgacagagaagcaaagtgcaacaagtgatgctgcagcatagagtttgaaagcaggttcttttataaatagtggtataccattattttgatt |
200 |
Q |
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| T |
6808526 |
caagagccatgacagaggagcaaagtgcaacaagtgatgctacagcatatagtttgaaaacaggcttttttaggaatattggtataccatca---tcatc |
6808622 |
T |
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| Q |
201 |
aggaccacctgggatagctgttgaggttgagaatgcaaca |
240 |
Q |
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| T |
6808623 |
ataaccacctgggatagatgttgaggttgtgaatgcaaca |
6808662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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