View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1771_low_25 (Length: 275)
Name: NF1771_low_25
Description: NF1771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1771_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 10239725 - 10239478
Alignment:
| Q |
20 |
aaaccctcagttccttccacgtggaccttaccatctctttgacggtgacggcatgcttcatgctgttaaaatcacaaacggaaaagccacactatgtagc |
119 |
Q |
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| T |
10239725 |
aaaccctcagttccttccacgtggaccttaccatctctttgacggtgacggcatgcttcatgctgttaaaatcacaaacggaaaagccacactatgtagc |
10239626 |
T |
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| Q |
120 |
cgttacgttcaaacctataaatacaaaatcgaaaacgaagctggttaccaaattctcccaaacgtgttttctggtttcaactcgcttattggtttagcgg |
219 |
Q |
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| T |
10239625 |
cgttacgttcaaacctataaatacaaaatcgaaaacgaagctggttaccaaattctcccaaacgtgttttctggtttcaactcgcttattggtttagcgg |
10239526 |
T |
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| Q |
220 |
cacgtggatccgtggctgtagcacgtgtgttaactggtcagtataatc |
267 |
Q |
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| T |
10239525 |
cacgtggatccgtggctgtagcacgtgtgttaactggtcagtataatc |
10239478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 20 - 265
Target Start/End: Complemental strand, 10230945 - 10230700
Alignment:
| Q |
20 |
aaaccctcagttccttccacgtggaccttaccatctctttgacggtgacggcatgcttcatgctgttaaaatcacaaacggaaaagccacactatgtagc |
119 |
Q |
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| T |
10230945 |
aaacccacagttccttccacgtggaccctaccatctctttgacggtgacggcatgcttcatgccattacaatctcaaacgggaaagccacactatgtagc |
10230846 |
T |
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| Q |
120 |
cgttacgttcaaacctataaatacaaaatcgaaaacgaagctggttaccaaattctcccaaacgtgttttctggtttcaactcgcttattggtttagcgg |
219 |
Q |
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| T |
10230845 |
cgttatgtaaaaacctacaagtacaaaattgaaaacaaagctggtcaccaacttatcccaaacgtgttttctggtttcaactcgcttattgctttagcgg |
10230746 |
T |
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| Q |
220 |
cacgtggatccgtggctgtagcacgtgtgttaactggtcagtataa |
265 |
Q |
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| T |
10230745 |
cacgtggatccgtggttgtagcacgggtgttaaccggtcagtataa |
10230700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 208
Target Start/End: Original strand, 10254880 - 10255068
Alignment:
| Q |
20 |
aaaccctcagttccttccacgtggaccttaccatctctttgacggtgacggcatgcttcatgctgttaaaatcacaaacggaaaagccacactatgtagc |
119 |
Q |
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| T |
10254880 |
aaacccacagttccttccacgtggaccctaccacctcttcgacggtgatggcatgcttcacgccattacaatctcaaacggaaaagctacactctgtagc |
10254979 |
T |
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| Q |
120 |
cgttacgttcaaacctataaatacaaaatcgaaaacgaagctggttaccaaattctcccaaacgtgttttctggtttcaactcgcttat |
208 |
Q |
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| T |
10254980 |
cgttacgttcaaacttacaaatacaaaatcgaaaacgaagctggttaccaacttatcccaaacgtgttttctggtttcaactcgcttat |
10255068 |
T |
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