View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1771_low_28 (Length: 255)
Name: NF1771_low_28
Description: NF1771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1771_low_28 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 42309670 - 42309425
Alignment:
| Q |
1 |
aagagttgcctattgcaattattattccttcgtgcgatccaaaatcaaagaaatgaagtttctgtttaagatatatgaaactggtattatgcatcagaca |
100 |
Q |
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| T |
42309670 |
aagaattgcctattgcaattattattccttcgtgcgatccaaaatcaaagaaatgaagtttctgtttaagatatatgaaactggtattatgcatcagaca |
42309571 |
T |
|
| Q |
101 |
gttaaccttctaattcctttgttcatctagataatgctaaaggttggacagaggaagagattgacaaaacagccgaggcaattggatacggggctgttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
42309570 |
gttaaccttctaattcctttgttcatctagataatgctaaaggttggacagaggaagagattgacaaaacagccgaggcaattggatatggggctgttaa |
42309471 |
T |
|
| Q |
201 |
gtaagttctttatctcaataatgttttcccatattcagagtataat |
246 |
Q |
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| T |
42309470 |
gtaagttctttatctcaataatgttttcccatattcaaagtataat |
42309425 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 25 - 233
Target Start/End: Original strand, 51569133 - 51569345
Alignment:
| Q |
25 |
ttccttcgtgcgatccaaaatcaaagaaatgaagtttctgttt----aagatatatgaaactggtattatgcatcagacagttaaccttctaattccttt |
120 |
Q |
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||||||| ||| | ||| ||||||||||||||||||||||||| ||||| |||| ||||| |||||||||| |||||||||||||||||| |||| | |
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| T |
51569133 |
ttccttcatgcaaaccagaatcaaagaaatgaagtttctgtttgttgaagatctatggaactgatattatgcattagacagttaaccttctaaatcctat |
51569232 |
T |
|
| Q |
121 |
gttcatctagataatgctaaaggttggacagaggaagagattgacaaaacagccgaggcaattggatacggggctgttaagtaagttctttatctcaata |
220 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||| ||||| | |||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
51569233 |
gttcatctagataatgctaaagattggacggaggaagagattgaaaaaacttcagaggcaattggatatggagctgttaagtaagttctttatctcaata |
51569332 |
T |
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| Q |
221 |
atgttttcccata |
233 |
Q |
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||| ||||||||| |
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| T |
51569333 |
atgctttcccata |
51569345 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 6 - 232
Target Start/End: Complemental strand, 47973812 - 47973578
Alignment:
| Q |
6 |
ttgcctattgcaattattatt----ccttcgtgcgatccaaaatcaaagaaatgaagtttctgttt----aagatatatgaaactggtattatgcatcag |
97 |
Q |
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||||||||||||||| ||||| ||||| || || ||| ||||||| ||||||||||||||||| ||||| |||| ||||| |||| ||||| || |
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| T |
47973812 |
ttgcctattgcaatttttatttcttccttcatgtgagccagaatcaaataaatgaagtttctgtttgtggaagatctatggaactgatattgtgcattag |
47973713 |
T |
|
| Q |
98 |
acagttaaccttctaattcctttgttcatctagataatgctaaaggttggacagaggaagagattgacaaaacagccgaggcaattggatacggggctgt |
197 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||| |||||| |||||||||||||| |||||| |||||||||||||||| |||||||| |
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| T |
47973712 |
acagttaaccttctaaatcccatgttcatctagataatgctaaagattggacggaggaagagattgagaaaacatccgaggcaattggatatggggctgt |
47973613 |
T |
|
| Q |
198 |
taagtaagttctttatctcaataatgttttcccat |
232 |
Q |
| |
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||||||||||| ||||||||||| |||||||||| |
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| T |
47973612 |
gaagtaagttctgtatctcaataacgttttcccat |
47973578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 151 - 205
Target Start/End: Complemental strand, 19749246 - 19749192
Alignment:
| Q |
151 |
gaggaagagattgacaaaacagccgaggcaattggatacggggctgttaagtaag |
205 |
Q |
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||||| |||||||| |||||| | ||||||||||| ||||||||||||||||||| |
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| T |
19749246 |
gaggaggagattgagaaaacatcagaggcaattggttacggggctgttaagtaag |
19749192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 151 - 205
Target Start/End: Original strand, 34032159 - 34032213
Alignment:
| Q |
151 |
gaggaagagattgacaaaacagccgaggcaattggatacggggctgttaagtaag |
205 |
Q |
| |
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||||| |||||||| | |||| | ||||||||||| ||||||||||||||||||| |
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| T |
34032159 |
gaggaggagattgagagaacatcagaggcaattggttacggggctgttaagtaag |
34032213 |
T |
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