View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1771_low_29 (Length: 249)
Name: NF1771_low_29
Description: NF1771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1771_low_29 |
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| [»] chr8 (5 HSPs) |
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| [»] scaffold1157 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 249
Target Start/End: Original strand, 16527026 - 16527266
Alignment:
| Q |
9 |
gagatgaacttacagacataatattcttgaggacggaagcaatactaatcactatatataaggttatgcctgataacattgctatgaaggggtaactttg |
108 |
Q |
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| T |
16527026 |
gagatgaacttacagacataatattcttgaggacagaagcaatactaatcactatatataaggttatgcctgacaacattgctatgaaggggtaactttg |
16527125 |
T |
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| Q |
109 |
caaaagtggtatagaaaaaatctgtgtatgcaacaaccaaagttacagatcatatttcaaatagctagcaatgaaattcagaattcaataactgctataa |
208 |
Q |
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| T |
16527126 |
caatagtggtatagaaaaaatctgcatatggaacaaccaaagttacagatcatatttcaaatagctagcaatgaaattcagaattcaataactgctataa |
16527225 |
T |
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| Q |
209 |
tagttactgacccctgtgatgcggccaaggccaataggtcc |
249 |
Q |
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| T |
16527226 |
tagttactgacccctgtgatgcggccaaggccaataggtcc |
16527266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 12 - 132
Target Start/End: Original strand, 16568621 - 16568741
Alignment:
| Q |
12 |
atgaacttacagacataatattcttgaggacggaagcaatactaatcactatatataaggttatgcctgataacattgctatgaaggggtaactttgcaa |
111 |
Q |
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| T |
16568621 |
atgaacttacagacataatattcttgaggatggaagcaatactaatcacaatgtataaggttatgccagacaacattgctatgaaggggtaactttgcaa |
16568720 |
T |
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| Q |
112 |
aagtggtatagaaaaaatctg |
132 |
Q |
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| T |
16568721 |
aagtggcatagaaaaaatctg |
16568741 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 26 - 165
Target Start/End: Original strand, 16587349 - 16587488
Alignment:
| Q |
26 |
ataatattcttgaggacggaagcaatactaatcactatatataaggttatgcctgataacattgctatgaaggggtaactttgcaaaagtggtatagaaa |
125 |
Q |
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| T |
16587349 |
ataatatttttcaggatggaagcaatactaatcacaatgtataaggttattcctgataacattgctatgaaggggtaactttgcaaaagtggtatggaaa |
16587448 |
T |
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| Q |
126 |
aaatctgtgtatgcaacaaccaaagttacagatcatattt |
165 |
Q |
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| T |
16587449 |
taatctgcataagaaacaaccatagtaacataacatattt |
16587488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 16 - 132
Target Start/End: Original strand, 16518544 - 16518660
Alignment:
| Q |
16 |
acttacagacataatattcttgaggacggaagcaatactaatcactatatataaggttatgcctgataacattgctatgaaggggtaactttgcaaaagt |
115 |
Q |
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| T |
16518544 |
acttacagacacaatattcttgaggatggaagcaagacaaatgattatgtacaatgttatgcctgacaacattgctatgaaggggtaactttgcaacact |
16518643 |
T |
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| Q |
116 |
ggtatagaaaaaatctg |
132 |
Q |
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| T |
16518644 |
ggtatagaaaaaatctg |
16518660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 26368504 - 26368574
Alignment:
| Q |
44 |
gaagcaatactaatcactatatataaggttatgcctgataacattgctatgaaggggtaactttgcaaaag |
114 |
Q |
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| T |
26368504 |
gaagcaatattaatcactaggtataatgtgattccagaaagcattgctatgaaggggtaactttgcaaaag |
26368574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1157 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: scaffold1157
Description:
Target: scaffold1157; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 12 - 132
Target Start/End: Complemental strand, 514 - 394
Alignment:
| Q |
12 |
atgaacttacagacataatattcttgaggacggaagcaatactaatcactatatataaggttatgcctgataacattgctatgaaggggtaactttgcaa |
111 |
Q |
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| T |
514 |
atgaacttacagacataatattcttgaggatggaagcaatactaatcacaatgtataaggttatgccagacaacattgctatgaaggggtaactttgcaa |
415 |
T |
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| Q |
112 |
aagtggtatagaaaaaatctg |
132 |
Q |
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| T |
414 |
aagtggcatagaaaaaatctg |
394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 2609247 - 2609178
Alignment:
| Q |
44 |
gaagcaatactaatcactatatataaggttatgcctgataacattgctatgaaggggtaactttgcaaaa |
113 |
Q |
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| T |
2609247 |
gaagcaatattaatcactaggtataatgtgattccagaaagcattgctatgaaggggtaactttgcaaaa |
2609178 |
T |
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