View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1771_low_3 (Length: 715)
Name: NF1771_low_3
Description: NF1771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1771_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 6 - 307
Target Start/End: Original strand, 31695840 - 31696141
Alignment:
| Q |
6 |
atattccatacttaatttagtgtaataatctttattttgatattaaagttttgtagcatatacaaagatcaatccgaatattgaaccaagttgagtcaag |
105 |
Q |
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| T |
31695840 |
atattccatacttaatttagggtaataatctttattttgatattaaagttttgtagcatatgcaaagatcaatccgaatattgaaccaagttgagtcaag |
31695939 |
T |
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| Q |
106 |
ttgttgacaatcaaagtgccgggtcagacaccatgacatcgaagtcattgactatagttgcaaaaaatactacagactattcggtaatattaaaccacgt |
205 |
Q |
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| T |
31695940 |
ttgttgacaatcaaagtgccgggtaagacactatgacatcgaagtcattgactatagttgcaaaaaatactacagactattcggtaatattaaactatgt |
31696039 |
T |
|
| Q |
206 |
atttcgtcatctaataattgtatgaaaaagaaggtataaatgaacctcatttaacaaaagattattttggaaattcaattttcctaatagttacgaagtt |
305 |
Q |
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| T |
31696040 |
atttcttcatctaataattgtatgaaaaagaatgtataaatgaacctcatttaacaaaagattattttggaaattcaattttcctagtagttacgaagtt |
31696139 |
T |
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| Q |
306 |
tt |
307 |
Q |
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|| |
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| T |
31696140 |
tt |
31696141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 351 - 697
Target Start/End: Original strand, 31696156 - 31696521
Alignment:
| Q |
351 |
aatcaaaagatgttggggaattctcagcgaaaattaaaaacacccaaaacatatcacatggttgaatttagtacctcaatactatt----ctccggtgga |
446 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| || ||||||| |
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| T |
31696156 |
aatcaaaagatgttggggaattctcagcgaaaattaaaaacacccaaaacatatcacatggttgaatttagtacctctatattatatatactacggtgga |
31696255 |
T |
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| Q |
447 |
cattcataatccaagctttaagaaatcaactaca----attatcacgaattac-------ttggcacaataaaaacattcaccaa---caatcaccaatg |
532 |
Q |
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| T |
31696256 |
cattcataatccaagctttaagaaatcaactatatataattatcacgaattacgaattacttggcacaataaaaacattcaccaataacaatcaccaaat |
31696355 |
T |
|
| Q |
533 |
gcatagtatgtccaatatgaacagctagcagaacttcttaaatgatgcaacgaacgagcgcatgtgcagctttgcataacataataacggataaaataaa |
632 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||| |||||||||||| ||||| ||||||| ||||||||||| |
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| T |
31696356 |
gcatagtatgtccaatatgaacagctagaagaacttcttaaatgatgtaacgaacgagcacatgtgcagcttagcatagcataatagaagataaaataaa |
31696455 |
T |
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| Q |
633 |
agacaagaggattggattgcatgagatccaaaa-ctaatctatcagctcgctgagagtgccatcat |
697 |
Q |
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| T |
31696456 |
agacaagaggattggattgcacgagatccaaaacctaatctatgagctcgctgagagtgccatcat |
31696521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 458 - 583
Target Start/End: Complemental strand, 53812203 - 53812078
Alignment:
| Q |
458 |
caagctttaagaaatcaactacaattatcacgaattacttggcacaataaaaacattcaccaacaatcaccaatggcatagtatgtccaatatgaacagc |
557 |
Q |
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||||| || |||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
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| T |
53812203 |
caagcattgagaaatcaaccacaattatcacgaattacttgacacaacaaaaacattcaccaacaatcaccaaaggcatagtatgtccaatatgagcagc |
53812104 |
T |
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| Q |
558 |
tagcagaacttcttaaatgatgcaac |
583 |
Q |
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||| |||| ||||||||||||||||| |
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| T |
53812103 |
tagtagaaattcttaaatgatgcaac |
53812078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 188 - 283
Target Start/End: Complemental strand, 53813004 - 53812909
Alignment:
| Q |
188 |
ggtaatattaaaccacgtatttcgtcatctaataattgtatgaaaaagaaggtataaatgaacctcatttaacaaaagattattttggaaattcaa |
283 |
Q |
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| T |
53813004 |
ggtaatattgaaccacagatttactcatctaataattgcatgaaaagggttgtacaaaagaatctcatttaataaaagattgttttggaaattcaa |
53812909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 248 - 310
Target Start/End: Original strand, 490418 - 490480
Alignment:
| Q |
248 |
aacctcatttaacaaaagattattttggaaattcaattttcctaatagttacgaagtttttct |
310 |
Q |
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|||||||||| | |||||||||||||||||||||||||| || | |||||| ||||||||||| |
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| T |
490418 |
aacctcatttcataaaagattattttggaaattcaatttcccaagtagttatgaagtttttct |
490480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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