View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1771_low_34 (Length: 238)
Name: NF1771_low_34
Description: NF1771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1771_low_34 |
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| [»] scaffold0073 (1 HSPs) |
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| [»] scaffold1157 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 219; Significance: 1e-120; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 16527598 - 16527820
Alignment:
| Q |
1 |
atccattatctattatgaccgacaatgataaacagttattataggttcaaaagatgcacctgaaattgaaagaacgttaccaacatcatcagttgtaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16527598 |
atccattatctattatgaccgacaatgataaacagttattataggttcaaaagatgcacctgaaattgaaagaacgttaccaacatcatcagttgtaaag |
16527697 |
T |
|
| Q |
101 |
ttcaaaccccctagcttcggaggactagtagcccataatgagaaaacctaaagaaagcaacacgagtagatgttttttacttctatatattaaaagatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
16527698 |
ttcaaaccccctagcttcggaggactagtagcccataatgagaaaacctaaagaaagcaacatgagtagatgttttttacttctatatattaaaagatat |
16527797 |
T |
|
| Q |
201 |
gaacaattgaatgtaccattttt |
223 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
16527798 |
gaacaattgaatgtaccattttt |
16527820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 159; E-Value: 8e-85
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 16569097 - 16569319
Alignment:
| Q |
1 |
atccattatctattatgaccgacaatgataaacagttattataggttcaaaagatgcacctgaaattgaaagaacgttaccaacatcatcagttgtaaag |
100 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| ||||||||| |
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| T |
16569097 |
atccattatctattatgaacgacaatgataaacagttattataggttcaaaagatgcacctgaaattataagaacatcaccaacatcatccgttgtaaag |
16569196 |
T |
|
| Q |
101 |
ttcaaaccccctagcttcggaggactagtagcccataatgagaaaacctaaagaaagcaacacgagtagatgttttttacttctatatattaaaagatat |
200 |
Q |
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|| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| | ||||||||| || |
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| T |
16569197 |
tttaaaccccctagcttcagaggactagtagcccataacgagaaaacctaaagaaagcaacatgagtagatgtttttcacttctacaaattaaaagagat |
16569296 |
T |
|
| Q |
201 |
gaacaattgaatgtaccattttt |
223 |
Q |
| |
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||||||||||||||||||||| |
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| T |
16569297 |
ttacaattgaatgtaccattttt |
16569319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 16587818 - 16588018
Alignment:
| Q |
22 |
acaatgataaacagttattataggttcaaaagatgcacctgaaattgaaagaacgttaccaacatcatcagttgtaaagttcaaaccccctagcttcgga |
121 |
Q |
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||||||||||| | ||||| || ||| |||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||||| || || |
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| T |
16587818 |
acaatgataaatatttattttaagtttgaaagatgcacctgaaattgaaagaacatcaccaacatcatcagttgtaaacttcaaaccccctagcctcaga |
16587917 |
T |
|
| Q |
122 |
ggactagtagcccataatgagaaaacctaaagaaagcaacacgagtagatgttttttacttctatatattaaaagatatgaacaattgaatgtaccattt |
221 |
Q |
| |
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|||||| ||||||||||||||||||||||| ||| |||| || ||||||||||| |||| ||| ||| || || || ||||||| ||||||||||| |
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|
| T |
16587918 |
ggactaacagcccataatgagaaaacctaaa-aaacaaacatgaatagatgtttttaacttatatgaattcaatgagatttacaattgcatgtaccattt |
16588016 |
T |
|
| Q |
222 |
tt |
223 |
Q |
| |
|
|| |
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|
| T |
16588017 |
tt |
16588018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 155
Target Start/End: Original strand, 16519215 - 16519330
Alignment:
| Q |
40 |
tataggttcaaaagatgcacctgaaattgaaagaacgttaccaacatcatcagttgtaaagttcaaaccccctagcttcggaggactagtagcccataat |
139 |
Q |
| |
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|||||| || ||| ||||||||| ||||| |||||| |||||||||||||||||||| |||||||| ||||| | || |||||||| || ||| || |
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| T |
16519215 |
tatagggtccaaatatgcacctgtaattgcaagaacattaccaacatcatcagttgtgaagttcaatccccccaaatttagaggactaacagaccacaaa |
16519314 |
T |
|
| Q |
140 |
gagaaaacctaaagaa |
155 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
16519315 |
gagaaaacctaaagaa |
16519330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 118
Target Start/End: Complemental strand, 37483768 - 37483700
Alignment:
| Q |
50 |
aaagatgcacctgaaattgaaagaacgttaccaacatcatcagttgtaaagttcaaaccccctagcttc |
118 |
Q |
| |
|
||||||||||||||| |||||||||| | ||||||||||||| ||||| | |||||||||| ||||||| |
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| T |
37483768 |
aaagatgcacctgaacttgaaagaacatcaccaacatcatcaattgtacatttcaaaccccttagcttc |
37483700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0073 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0073
Description:
Target: scaffold0073; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 50 - 110
Target Start/End: Original strand, 38520 - 38580
Alignment:
| Q |
50 |
aaagatgcacctgaaattgaaagaacgttaccaacatcatcagttgtaaagttcaaacccc |
110 |
Q |
| |
|
||||||||||||||| |||||||||| | ||||||||||||| ||||| | |||||||||| |
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|
| T |
38520 |
aaagatgcacctgaacttgaaagaacatcaccaacatcatcaattgtacatttcaaacccc |
38580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1157 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold1157
Description:
Target: scaffold1157; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 38 - 1
Alignment:
| Q |
1 |
atccattatctattatgaccgacaatgataaacagtta |
38 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |
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| T |
38 |
atccattatctattatgaacgacaatgataaacagtta |
1 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 39162235 - 39162187
Alignment:
| Q |
65 |
attgaaagaacgttaccaacatcatcagttgtaaagttcaaacccccta |
113 |
Q |
| |
|
|||| |||||| || |||||||||| |||||||||||||||||| |||| |
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|
| T |
39162235 |
attgcaagaacattgccaacatcattagttgtaaagttcaaaccaccta |
39162187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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