View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1771_low_4 (Length: 629)
Name: NF1771_low_4
Description: NF1771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1771_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 27 - 611
Target Start/End: Original strand, 31408226 - 31408813
Alignment:
| Q |
27 |
taagagtccagcggtgtaactcacacatacaaaatgtcagtggagaatcgtgagttcgaatcggtgtccataaatattaaatgttcttgcaactaccata |
126 |
Q |
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| T |
31408226 |
taagagtccagcggtgtaactcacacatacaaaatgttagtggagaatcgtgagttcgaatcggtgtccataaatattaaatgttcttgcaactaccata |
31408325 |
T |
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| Q |
127 |
cacgtacacattttaaacatgagaatccaagtgttttcaaacnnnnnnnnttgatatcacaacattaagaagaaattatcaagaattaatagccaaaaat |
226 |
Q |
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| T |
31408326 |
cacgtacacattttaaacatgagaatccaagtgttttcaaacaaaaaaaattgatatcacaacattaagaagaaattatcaagaattaatagccaaaaac |
31408425 |
T |
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| Q |
227 |
caaaagtgctgcaaccttctatcatggctcaagctcaaaaacatcccattggtatctacgatccgataa-tttttgtagnnnnnnnggccgatcgaaact |
325 |
Q |
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| T |
31408426 |
caaaagtgctgcaaccttctatcatggctgaagctcaaaaacatcccattggtatctacgatccgataaatttttgtagaaaaaaaggccgatcgaaact |
31408525 |
T |
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| Q |
326 |
tccatcgaaaactatcttccgataactnnnnnnnctttt-cagcaatttggggggctaattaaacagcagctaccaccataacatattgcaccttgcaag |
424 |
Q |
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| T |
31408526 |
tccatcgaaaactatcttccgataactgggggggctttttcagcaatttggggggctaattaaacagcagctaccaccataacatattgcaccttgcaag |
31408625 |
T |
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| Q |
425 |
cccagcccatgtccctttcagctcaaattgcataattaattatcatcatactacaatattcttcatattaatttgtccaacaataatgcaattacagtgt |
524 |
Q |
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| T |
31408626 |
cccagcccatgtccctttcggctcaaattgcataattaattatcatcatactacaatattcttcatattaatctgtccaacaataatgcaattacagtgt |
31408725 |
T |
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| Q |
525 |
tggtgattgtgac-aaaaaatagtacatgtaatttgaacagtaaaattgccaagtatacaagcatgatcctttacataagaagtttgt |
611 |
Q |
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| T |
31408726 |
tggtgattgtgacaaaaaaatagtacatgtaatttgaacagtaaaattgccaagtatacaagcatgatccattacataagaagtttgt |
31408813 |
T |
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