View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1771_low_41 (Length: 234)
Name: NF1771_low_41
Description: NF1771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1771_low_41 |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 10239501 - 10239281
Alignment:
| Q |
1 |
gtgtgttaactggtcagtataatccaattaacggcattggattgatcaacacaagtttggctctgtttggcaaccgtctttttgctttaggagaatcaga |
100 |
Q |
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| T |
10239501 |
gtgtgttaactggtcagtataatccaattaacggcattggattgatcaacacaagtttggctctgtttggcaaccgtctttttgctttaggagaatcaga |
10239402 |
T |
|
| Q |
101 |
tcttccttatgaaatcaaagttacaccaaacggtgatatccaaacaatcggccgttatgattttaacggcaaactcttcatgaatatgacggcgcatcct |
200 |
Q |
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| T |
10239401 |
tcttccttatgaaatcaaagttacaccaaacggtgatatccaaacaataggccgttatgattttaacggcaaactcttcatgaatatgacggcgcatcct |
10239302 |
T |
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| Q |
201 |
aaaattgactccgacacaggt |
221 |
Q |
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| T |
10239301 |
aaaattgactccgacacaggt |
10239281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 3 - 218
Target Start/End: Complemental strand, 10230719 - 10230504
Alignment:
| Q |
3 |
gtgttaactggtcagtataatccaattaacggcattggattgatcaacacaagtttggctctgtttggcaaccgtctttttgctttaggagaatcagatc |
102 |
Q |
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| T |
10230719 |
gtgttaaccggtcagtataacccatctaacggcattggattggtcaacacaagtttagctctgtttggtaaccgtctttttgctttaggagaatcagatc |
10230620 |
T |
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| Q |
103 |
ttccttatgaaatcaaagttacaccaaacggtgatatccaaacaatcggccgttatgattttaacggcaaactcttcatgaatatgacggcgcatcctaa |
202 |
Q |
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| T |
10230619 |
ttccttatgaagtcaaactaacaccaaacggtgacatccaaacaatgggccgttatgatttcaacggcaaactcttgatgagtatgacggcgcatcctaa |
10230520 |
T |
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| Q |
203 |
aattgactccgacaca |
218 |
Q |
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| T |
10230519 |
aatagactctgacaca |
10230504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 29 - 221
Target Start/End: Original strand, 10255132 - 10255324
Alignment:
| Q |
29 |
taacggcattggattgatcaacacaagtttggctctgtttggcaaccgtctttttgctttaggagaatcagatcttccttatgaaatcaaagttacacca |
128 |
Q |
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|||||||||||| || |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
10255132 |
taacggcattggtttagccaacacaagtttggctctgtttggtaacaaactttttgctttaggagaatcagatcttccttatgaaatcaatcttacgcca |
10255231 |
T |
|
| Q |
129 |
aacggtgatatccaaacaatcggccgttatgattttaacggcaaactcttcatgaatatgacggcgcatcctaaaattgactccgacacaggt |
221 |
Q |
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| T |
10255232 |
aacggtgatatccaaacaattggccgttatgattttaacggtaaactctccatgagtatgactgcacatccgaaaattgacggcgacacaggt |
10255324 |
T |
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