View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1771_low_6 (Length: 576)
Name: NF1771_low_6
Description: NF1771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1771_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 535; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 15 - 561
Target Start/End: Original strand, 43054621 - 43055167
Alignment:
| Q |
15 |
aatataaatgagatagaagaaagaaattcaaataaaatttcaagaaattactagcttaggacttagaactcaacatcacacttggtgggtataagtcgaa |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43054621 |
aatataaatgagatagaagaaagaaattcaaataaaatttcaagaaattactagcttagaacttagaactcaacatcacacttggtgggtataagtcgaa |
43054720 |
T |
|
| Q |
115 |
tgaaggtaaagtcagttgcattacgagtgctcaaaggaactgtgaggtcgcatttgaccttaggtttgaactttctggatatggagtctccaagtttaaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43054721 |
tgaaggtaaagtcagttgcattacgagtgctcaaaggaactgtgaggtcgcatttgaccttaggtttgaactttctggatatggagtctccaagtttaaa |
43054820 |
T |
|
| Q |
215 |
cctaatcctaaagtagagcttcacatagatatcataaactccaacattcttatctttgttgaactccgaaatttgatcattgtcgagcatcaatagtttt |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43054821 |
cctaatcctaaagtagagcttcacatagatatcataaactccaacattcttatctttgttgaactccgaaatttgatcattgtcgagcatcaatagtttt |
43054920 |
T |
|
| Q |
315 |
tgaccagaaaaaacaccggtcatgggattgctattcttcttgtcttgacgaaatgagttcatgtgtgtgataacatctacattagaaaacctcgaccctt |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43054921 |
tgaccagaaaaaacaccggtcatgggattgctattcttcttgtcttgacgaaatgagttcatgtgtgtgataacatctacattagaaaacctcgaccctt |
43055020 |
T |
|
| Q |
415 |
catagaatgcttgagcttcaactttgtcgtagtagatgccaagttttttgtttgggttgtgggatgtgaagttgagcaccatgttgtagtatagtgtgtt |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43055021 |
catagaatgcttgagcttcaactttgtcgtagtagatgccaagttttttgtttgggttgtgggatgtgaagttgagcaccatgttgtagtatagtgtgtt |
43055120 |
T |
|
| Q |
515 |
gtctgtgtggtcaaattgtgttagttcggctttcgttacatagaact |
561 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
43055121 |
gtttgtgtggtcaaattgtgttagttcggctttcgtaacatagaact |
43055167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 4e-95
Query Start/End: Original strand, 145 - 561
Target Start/End: Original strand, 43062002 - 43062418
Alignment:
| Q |
145 |
tcaaaggaactgtgaggtcgcatttgaccttaggtttgaactttctggatatggagtctccaagtttaaacctaatcctaaagtagagcttcacatagat |
244 |
Q |
| |
|
|||| |||||| ||||||| |||||||||||||| ||| | | | ||||| |||||||||||||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
43062002 |
tcaatggaactttgaggtcacatttgaccttaggcttgtatgtgcgagatatcgagtctccaagtttgaacctaatcctgaagtagagcttcacatagat |
43062101 |
T |
|
| Q |
245 |
atcataaactccaacattcttatctttgttgaactccgaaatttgatcattgtcgagcatcaatagtttttgaccagaaaaaacaccggtcatgggattg |
344 |
Q |
| |
|
| |||||||||||||| |||| |||||| |||| ||||| | ||||||||||||||| | ||| | ||||| || | ||||| || ||||||| | |
|
|
| T |
43062102 |
accataaactccaacactcttgtctttgctgaattccgagacttgatcattgtcgagtaccaacaacttttgtcctaagaaaacgccactcatggggtca |
43062201 |
T |
|
| Q |
345 |
ctattcttcttgtcttgacgaaatgagttcatgtgtgtgataacatctacattagaaaacctcgacccttcatagaatgcttgagcttcaactttgtcgt |
444 |
Q |
| |
|
||| | ||||||| ||| ||||| ||||||||||||||||| ||||| ||||| | ||| ||||| ||||||||||| ||| ||||||||||||| |||| |
|
|
| T |
43062202 |
ctagttttcttgttttggcgaaacgagttcatgtgtgtgatcacatcgacatttgcaaatctcgatccttcatagaaagctcgagcttcaactttatcgt |
43062301 |
T |
|
| Q |
445 |
agtagatgccaagttttttgtttgggttgtgggatgtgaagttgagcaccatgttgtagtatagtgtgttgtctgtgtggtcaaattgtgttagttcggc |
544 |
Q |
| |
|
| ||||||| ||||||||||||||||||||| | |||||| ||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
43062302 |
aatagatgctaagttttttgtttgggttgtgtgctgtgaaattgagcaccatgtcgtagtgtagtgtgttgtttgtgtagtcaaattgtgttagttcggc |
43062401 |
T |
|
| Q |
545 |
tttcgttacatagaact |
561 |
Q |
| |
|
||| || |||||||||| |
|
|
| T |
43062402 |
tttagtaacatagaact |
43062418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 204 - 516
Target Start/End: Original strand, 43049276 - 43049588
Alignment:
| Q |
204 |
ccaagtttaaacctaatcctaaagtagagcttcacatagatatcataaactccaacattcttatctttgttgaactccgaaatttgatcattgtcgagca |
303 |
Q |
| |
|
|||||| | ||||||||||||||||| ||| |||||||||||||||||||| || || |||| |||||||| ||||| || | |||||| ||||||||| |
|
|
| T |
43049276 |
ccaagtctgaacctaatcctaaagtaaagcctcacatagatatcataaacttcatcactcttgtctttgttaaactcggagacttgatcgctgtcgagca |
43049375 |
T |
|
| Q |
304 |
tcaatagtttttgaccagaaaaaacaccggtcatgggattgctattcttcttgtcttgacgaaatgagttcatgtgtgtgataacatctacattagaaaa |
403 |
Q |
| |
|
|| | | ||| || || |||||| | ||||||| ||||| ||||||||| ||| ||||||||||||||||||||||| ||||| ||||| | ||| |
|
|
| T |
43049376 |
cgaaaacatgttgtcctgagaaaacagcactcatggggttgctgctcttcttgtattggcgaaatgagttcatgtgtgtgatcacatcaacattggcaaa |
43049475 |
T |
|
| Q |
404 |
cctcgacccttcatagaatgcttgagcttcaactttgtcgtagtagatgccaagttttttgtttgggttgtgggatgtgaagttgagcaccatgttgtag |
503 |
Q |
| |
|
||| |||||||| ||||||||| | || || ||||| || || |||||| |||||||||||||| || | | ||||||||||||||||||||||||| |
|
|
| T |
43049476 |
ccttgacccttcgtagaatgctcgtgcctccactttatcataatagatgttgagttttttgtttggattacgtgctgtgaagttgagcaccatgttgtag |
43049575 |
T |
|
| Q |
504 |
tatagtgtgttgt |
516 |
Q |
| |
|
| |||||| |||| |
|
|
| T |
43049576 |
tttagtgtattgt |
43049588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 225 - 538
Target Start/End: Original strand, 43024146 - 43024459
Alignment:
| Q |
225 |
aagtagagcttcacatagatatcataaactccaacattcttatctttgttgaactccgaaatttgatcattgtcgagcatcaatagtttttgaccagaaa |
324 |
Q |
| |
|
|||||||| ||||||||||||||||||||| ||||| ||||||||||||| ||||| || | ||||| ||||||||||||||||| ||| || || | |
|
|
| T |
43024146 |
aagtagagtttcacatagatatcataaacttcaacactcttatctttgttaaactcagagacttgattattgtcgagcatcaataaccgttgtcctgaga |
43024245 |
T |
|
| Q |
325 |
aaacaccggtcatgggattgctattcttcttgtcttgacgaaatgagttcatgtgtgtgataacatctacattagaaaacctcgacccttcatagaatgc |
424 |
Q |
| |
|
|||||||| |||| |||| || ||||||| ||| || ||||| ||||| |||||| ||||| ||||| | ||||| || ||||| |||||||| |
|
|
| T |
43024246 |
aaacaccgctcataggatcactgctcttcttaaattggcggaatgaattcatagctgtgatcacatccacattcgccaaccttgaaccttcgtagaatgc |
43024345 |
T |
|
| Q |
425 |
ttgagcttcaactttgtcgtagtagatgccaagttttttgtttgggttgtgggatgtgaagttgagcaccatgttgtagtatagtgtgttgtctgtgtgg |
524 |
Q |
| |
|
| | || |||||||||||||| |||| | |||||||||||||||||| | | ||||||||||||||||||||||||| || ||||||| | ||| | |
|
|
| T |
43024346 |
tcgtgcctcaactttgtcgtaatagaagttgagttttttgtttgggttgcgagcggtgaagttgagcaccatgttgtagtgcagggtgttgtttatgtag |
43024445 |
T |
|
| Q |
525 |
tcaaattgtgttag |
538 |
Q |
| |
|
|| |||| |||||| |
|
|
| T |
43024446 |
tcgaattttgttag |
43024459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University