View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1771_low_7 (Length: 555)
Name: NF1771_low_7
Description: NF1771
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1771_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 449; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 18 - 515
Target Start/End: Original strand, 2007939 - 2008436
Alignment:
| Q |
18 |
gttcactgtgctgtgattgaacacgctgttttgaacaacaaaaacttgtagttgattctctgtctcgtcccatgagaatattggagtataaaatgcattt |
117 |
Q |
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| T |
2007939 |
gttcactgtgctgtgattgaacacgctgttttgaacaacaaaaacttgtagttgattctatgtctcgtcccatgagaatattggagtataaaatgcattt |
2008038 |
T |
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| Q |
118 |
tggagttccataggtcactgcagtatttgatggttttatttcattcatgtttgatggaattgtaaacccgttttaccnnnnnnntatcatgtctagttag |
217 |
Q |
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| T |
2008039 |
tggagttccataggtcactgcagtatttgattgttttatttcattcatgtttgatggaagtgtaaacccgttttaccaaaaaaatatcatgtctagttag |
2008138 |
T |
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| Q |
218 |
gtagggatgaggaggtgtctttctatggagcttttggtgttctaagattgcatgattttgataggagatgttacagtctcatagcttatgacccacaaat |
317 |
Q |
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| T |
2008139 |
gtagggatgaggaggtgtctttctatggagtttttggtgttctaagattgcatgattttgataggagatgttacagtctcatagcttaggacccacaaat |
2008238 |
T |
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| Q |
318 |
tagatgttcatcctaaggctctacaaattgtttcgtaatgtctttcactaaatatattatggagagttcacaatactttgactgatagctgatggcaatc |
417 |
Q |
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| T |
2008239 |
tggatgttcatcctaaggctctacaaattgtttcgtaatgtctttcactaaatatattatggagaattcacaatactttgactgatagctgatggcaatc |
2008338 |
T |
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| Q |
418 |
taaagcatcaattgttgaaaacttcatctctgcttccatggggctatgtgacaagtgatcttttattttactgattgctaatggggcttttattttag |
515 |
Q |
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| T |
2008339 |
taaagcatcaattgttgaaaacttcatctctgcttccatggggctatgtgacaagtgatcttttattttactgattgctaatggggcttttattttag |
2008436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 206 - 313
Target Start/End: Original strand, 2003667 - 2003774
Alignment:
| Q |
206 |
atgtctagttaggtagggatgagga-ggtgtctttctatggagcttttggtgttctaagattgcatgattttgataggagatgttacagtctcatagctt |
304 |
Q |
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| T |
2003667 |
atgtatagttaggtaaggatgagggtggtgtctttctacg-aggttttgatgttctaagatcgcatgattttgataggagatgttagagtcttatagctt |
2003765 |
T |
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| Q |
305 |
atgacccac |
313 |
Q |
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| T |
2003766 |
aggacccac |
2003774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 317
Target Start/End: Original strand, 2003127 - 2003238
Alignment:
| Q |
206 |
atgtctagttaggtagggatgagga-ggtgtctttctatggagcttttggtgttctaagattgcatgattttgataggagatgttacagtctcatagctt |
304 |
Q |
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| T |
2003127 |
atgtatagttaggtaatgatgagggtggtgtctttctacgaa-cttttagtgttctaagatcgcatgattttgataagagatgttaaagtcttattgctt |
2003225 |
T |
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| Q |
305 |
atgacccacaaat |
317 |
Q |
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| T |
2003226 |
aggacccacaaat |
2003238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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