View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17720_low_2 (Length: 431)
Name: NF17720_low_2
Description: NF17720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17720_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 121 - 412
Target Start/End: Original strand, 14869407 - 14869697
Alignment:
| Q |
121 |
tcattgacaatcaatgtctttgatactcatatcaacctattgtaaaaaatcaaataaatagtaacactgaaatgaaagatgaattgcagcaacgttaatg |
220 |
Q |
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| T |
14869407 |
tcattgacaatcaatgtctttgatactcatatcaac-tattgtaaaaaatcaaataaatagtaacactgaaatgaaagatgaattgcagcaacgttaatg |
14869505 |
T |
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| Q |
221 |
tatnnnnnnnttcagctaaggtaatattgagtgaaaatcattatccatatgtttgattctctgattttgacattgtcttaatattttcaattctatttga |
320 |
Q |
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| T |
14869506 |
tataaaaaaattcagctaaggtaatattgagtgaaaatcattatccatatgtttgattctctgattttgacattgtcttaacattttcaattctatttga |
14869605 |
T |
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| Q |
321 |
aattattttgcgtgtttgagcaaatatcatcatgaaactcggaaacattatgctaacagtgggagctttgtttgctctcttcaccctcacct |
412 |
Q |
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| T |
14869606 |
aattattttgtgtgtttgagcaaatatcatcatgaagctcggaaacattatactaacagtgggagctttgtttgctctcttcaccctcacct |
14869697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 9 - 62
Target Start/End: Original strand, 14869222 - 14869275
Alignment:
| Q |
9 |
agcacagattaaaatagtaaaaatttaaaataagttttgaatgaagtctaattg |
62 |
Q |
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| T |
14869222 |
agcacagattaaaatagtaaaaatttaaaataagttttgaatgaagtctaattg |
14869275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 309 - 412
Target Start/End: Complemental strand, 30424996 - 30424892
Alignment:
| Q |
309 |
aattctatttgaaattattttgcgtgtttgagcaaatatcatcatgaa-actcggaaacattatgctaacagtgggagctttgtttgctctcttcaccct |
407 |
Q |
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||||||||||||||||||| | |||||||||||||||||||||||||| ||||||| |||||| |||| |||||||| ||||||||||||||||||| | |
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| T |
30424996 |
aattctatttgaaattattgtacgtgtttgagcaaatatcatcatgaagcctcggaagcattattctaatagtgggagttttgtttgctctcttcacctt |
30424897 |
T |
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| Q |
408 |
cacct |
412 |
Q |
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||||| |
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| T |
30424896 |
cacct |
30424892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 382 - 412
Target Start/End: Complemental strand, 8976095 - 8976065
Alignment:
| Q |
382 |
ggagctttgtttgctctcttcaccctcacct |
412 |
Q |
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| T |
8976095 |
ggagctttgtttgctctcttcaccctcacct |
8976065 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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