View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17720_low_4 (Length: 318)

Name: NF17720_low_4
Description: NF17720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17720_low_4
NF17720_low_4
[»] chr5 (14 HSPs)
chr5 (147-298)||(42171594-42171745)
chr5 (13-136)||(37827277-37827400)
chr5 (13-136)||(43489461-43489584)
chr5 (154-298)||(42253552-42253696)
chr5 (13-136)||(37037479-37037602)
chr5 (13-136)||(2027837-2027960)
chr5 (13-136)||(3616677-3616800)
chr5 (13-136)||(33336300-33336423)
chr5 (13-111)||(23417053-23417151)
chr5 (13-104)||(18003407-18003498)
chr5 (193-301)||(41849170-41849279)
chr5 (67-111)||(3614701-3614744)
chr5 (67-111)||(37828457-37828500)
chr5 (67-111)||(43487485-43487528)
[»] chr8 (13 HSPs)
chr8 (13-136)||(9312266-9312389)
chr8 (13-136)||(35217804-35217927)
chr8 (13-138)||(44501194-44501319)
chr8 (13-136)||(16726897-16727020)
chr8 (13-136)||(23715943-23716066)
chr8 (13-136)||(42990343-42990466)
chr8 (13-136)||(38224552-38224675)
chr8 (13-136)||(12773573-12773696)
chr8 (13-136)||(32740922-32741045)
chr8 (67-111)||(12773156-12773199)
chr8 (67-111)||(35215828-35215871)
chr8 (67-111)||(38222582-38222625)
chr8 (67-111)||(44501849-44501892)
[»] chr4 (16 HSPs)
chr4 (13-136)||(15056336-15056459)
chr4 (13-136)||(21398627-21398750)
chr4 (13-136)||(45117997-45118120)
chr4 (19-135)||(17194641-17194757)
chr4 (13-136)||(1084297-1084420)
chr4 (13-136)||(5927236-5927359)
chr4 (13-136)||(10489755-10489878)
chr4 (13-136)||(14678468-14678591)
chr4 (13-136)||(49545376-49545499)
chr4 (13-111)||(45108290-45108388)
chr4 (13-111)||(27181784-27181882)
chr4 (13-136)||(54072629-54072750)
chr4 (67-111)||(1086353-1086396)
chr4 (67-111)||(5925970-5926013)
chr4 (67-111)||(10484866-10484909)
chr4 (67-111)||(14676552-14676595)
[»] chr3 (14 HSPs)
chr3 (13-136)||(3863804-3863927)
chr3 (13-136)||(27644243-27644366)
chr3 (13-136)||(38516866-38516990)
chr3 (13-136)||(20395080-20395203)
chr3 (13-136)||(34946916-34947039)
chr3 (13-136)||(49529853-49529975)
chr3 (13-136)||(28392590-28392713)
chr3 (13-94)||(44552047-44552128)
chr3 (255-299)||(23553011-23553055)
chr3 (100-136)||(44552022-44552058)
chr3 (67-111)||(10542167-10542210)
chr3 (67-111)||(20394302-20394345)
chr3 (67-111)||(38518923-38518966)
chr3 (67-111)||(44554061-44554104)
[»] chr2 (9 HSPs)
chr2 (13-136)||(7355218-7355341)
chr2 (13-136)||(3536288-3536411)
chr2 (13-136)||(30111894-30112017)
chr2 (13-136)||(30123181-30123304)
chr2 (13-136)||(30877232-30877355)
chr2 (13-136)||(12534349-12534472)
chr2 (13-136)||(2273973-2274096)
chr2 (13-136)||(43379871-43379994)
chr2 (67-111)||(3534311-3534354)
[»] chr1 (9 HSPs)
chr1 (13-136)||(7391206-7391329)
chr1 (13-136)||(41775301-41775424)
chr1 (13-136)||(16640529-16640652)
chr1 (13-136)||(22146419-22146542)
chr1 (13-136)||(29650928-29651051)
chr1 (13-111)||(8363804-8363902)
chr1 (67-111)||(7390882-7390925)
chr1 (67-111)||(29658182-29658225)
chr1 (67-111)||(41773325-41773368)
[»] scaffold0129 (1 HSPs)
scaffold0129 (13-136)||(37774-37897)
[»] chr7 (13 HSPs)
chr7 (13-136)||(10267912-10268035)
chr7 (13-136)||(336917-337040)
chr7 (13-136)||(25519847-25519970)
chr7 (13-136)||(43311116-43311239)
chr7 (13-136)||(10902386-10902509)
chr7 (13-136)||(3524060-3524183)
chr7 (13-136)||(11806347-11806470)
chr7 (13-136)||(32592482-32592605)
chr7 (13-136)||(4122296-4122419)
chr7 (67-111)||(334982-335025)
chr7 (67-111)||(10901968-10902011)
chr7 (67-111)||(25518585-25518628)
chr7 (67-111)||(43314987-43315030)
[»] chr6 (5 HSPs)
chr6 (13-136)||(14220361-14220484)
chr6 (13-136)||(30702810-30702933)
chr6 (13-136)||(5309046-5309169)
chr6 (44-136)||(21351081-21351173)
chr6 (67-111)||(30704865-30704908)
[»] scaffold0009 (1 HSPs)
scaffold0009 (67-111)||(16004-16047)


Alignment Details
Target: chr5 (Bit Score: 136; Significance: 6e-71; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 147 - 298
Target Start/End: Original strand, 42171594 - 42171745
Alignment:
Q  147 ggacgcaactattatctagcgtccgtgcctgcattggcaggctgccacaacaaatgtgtcagtagggtcaaaccaacaaaccttccttgaatttggattc 246  Q
    |||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  42171594 ggacacaactattatctagtgtacgtgcctgcattggcaggctgccacaacaaatgtgtcagtagggttaaaccaacaaaccttccttgaatttggattc 42171693  T
Q  247 ccaactggtatgtcaagcacatcggagaattccagcaacttctctttattac 298  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42171694 ccaactggtatgtcaagcacatcggagaattccagcaacttctctttattac 42171745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 37827400 - 37827277
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37827400 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 37827301  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  37827300 cgagtattaatttaaagagtttct 37827277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 43489461 - 43489584
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43489461 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 43489560  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  43489561 cgagtattaatttaaagagtttct 43489584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 154 - 298
Target Start/End: Complemental strand, 42253696 - 42253552
Alignment:
Q  154 actattatctagcgtccgtgcctgcattggcaggctgccacaacaaatgtgtcagtagggtcaaaccaacaaaccttccttgaatttggattcccaactg 253  Q
    |||||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  42253696 actattatctagtgtccgtgcctgcactggcaggctgccacaacaaatgcgtcagtagggttaaaccaacaaaccttccttgaatttgcattcccaactg 42253597  T
Q  254 gtatgtcaagcacatcggagaattccagcaacttctctttattac 298  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  42253596 gtatgtcaagcacatcagagaattccagcaacttctctttattac 42253552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 37037602 - 37037479
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  37037602 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggatcgaacaaatttattattttagagagtttattaatttac 37037503  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  37037502 cgagtattaatttaaagagtttct 37037479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 2027837 - 2027960
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||     
T  2027837 aaaattattatcttattattttatcgaattattcaattttttacactggctcaagtcgggaccggacaaatttattattttagagaatttattaatttat 2027936  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  2027937 cgagtattaatttaaagagtttct 2027960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 3616677 - 3616800
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  3616677 aaaattattatcttattattttatcgaattattcaattttttacactgacccaagtcggaaccggacaaatttattattttagagagtttattaatttac 3616776  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||| ||||||||||    
T  3616777 cgagtattaattttaagagtttct 3616800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 33336300 - 33336423
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||| || |||||||||||||| ||| |||||||||||||||||||||||||||||||| ||| ||||||||||||     
T  33336300 aaaattattatcttattattttatcgagtttttcaattttttacattggtccaagtcgggaccggacaaatttattattttaaagaatttattaatttat 33336399  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  33336400 cgagtattaatttaaagagtttct 33336423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 23417053 - 23417151
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaattta 111  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23417053 aaaattattatcttattattttatcaaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaattta 23417151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 18003498 - 18003407
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttat 104  Q
    ||||||||||||||||||||||||||| || |||||||||||||| |||| ||| |||| ||||||||||||||||||||||||||||||||    
T  18003498 aaaattattatcttattattttatcgagtttttcaattttttacattggctcaaatcggaaccggacaaatttattattttagagagtttat 18003407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 193 - 301
Target Start/End: Complemental strand, 41849279 - 41849170
Alignment:
Q  193 acaacaaatgtgtcagtagggtc-aaaccaacaaaccttccttgaatttggattcccaactggtatgtcaagcacatcggagaattccagcaacttctct 291  Q
    |||||||||||||||  |||||  |||||||||||||||||||| ||||| ||| |||||||||| |||||||| ||| |||||||||||||||||||||    
T  41849279 acaacaaatgtgtcaacagggtttaaaccaacaaaccttccttgtatttgcattgccaactggtacgtcaagcagatcagagaattccagcaacttctct 41849180  T
Q  292 ttattacatt 301  Q
    || |||||||    
T  41849179 ttgttacatt 41849170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 3614701 - 3614744
Alignment:
Q  67 gtcgggaccggacaaatttattattttagagagtttattaattta 111  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||    
T  3614701 gtcgggaccggagaaatttattaatttagagag-ttattaattta 3614744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 37828500 - 37828457
Alignment:
Q  67 gtcgggaccggacaaatttattattttagagagtttattaattta 111  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||    
T  37828500 gtcgggaccggagaaatttattaatttagagag-ttattaattta 37828457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 43487485 - 43487528
Alignment:
Q  67 gtcgggaccggacaaatttattattttagagagtttattaattta 111  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||    
T  43487485 gtcgggaccggagaaatttattaatttagagag-ttattaattta 43487528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 9e-64; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 9312389 - 9312266
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9312389 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 9312290  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  9312289 cgagtattaatttaaagagtttct 9312266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 35217804 - 35217927
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35217804 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 35217903  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  35217904 cgagtattaatttaaagagtttct 35217927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 138
Target Start/End: Complemental strand, 44501319 - 44501194
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44501319 aaaattattatcttattattttatcgaattattcaattttttacactggcccaaatcgggaccggacaaatttattattttagagagtttattaatttac 44501220  T
Q  113 cgagtattaatttaaagagtttctgt 138  Q
    ||||||||||||||||||||||||||    
T  44501219 cgagtattaatttaaagagtttctgt 44501194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 16727020 - 16726897
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  16727020 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagaaagtttattaatttac 16726921  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  16726920 cgagtattaatttaaagagtttct 16726897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 23716066 - 23715943
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  23716066 aaaattattatcttattattttatcgaattattcaattttttacactggctcaagtcgggaccggacaaatttattattttagagagtttattaatttac 23715967  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  23715966 cgagtattaatttaaagagtttct 23715943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 42990343 - 42990466
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42990343 aaaattattatcttattattttatcgaattattcaattttttacactagcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 42990442  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  42990443 cgagtattaatttaaagagtttct 42990466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 38224552 - 38224675
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38224552 aaaattattatcttattattttatcgaattattcaattttttacactggcctaagtcgggaccggacaaatttattattttagagagtttattaatttac 38224651  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    |||||||||||||||||| |||||    
T  38224652 cgagtattaatttaaagattttct 38224675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 12773573 - 12773696
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||     
T  12773573 aaaattattatcttattattttatcgaattattcaattttttacactggcccaaatcggaaccggacaaatttattattttagagagtttattaatttat 12773672  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  12773673 cgagtattaatttaaagagtttct 12773696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 32741045 - 32740922
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||     
T  32741045 aaaattattatcttattattttatcgaattattcaattttttacactggctcaagtcgggaccggacaaatttattattttaaagagtttattaatttat 32740946  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  32740945 cgagtattaatttaaagagtttct 32740922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 12773156 - 12773199
Alignment:
Q  67 gtcgggaccggacaaatttattattttagagagtttattaattta 111  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||    
T  12773156 gtcgggaccggagaaatttattaatttagagag-ttattaattta 12773199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 35215828 - 35215871
Alignment:
Q  67 gtcgggaccggacaaatttattattttagagagtttattaattta 111  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||    
T  35215828 gtcgggaccggagaaatttattaatttagagag-ttattaattta 35215871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 38222582 - 38222625
Alignment:
Q  67 gtcgggaccggacaaatttattattttagagagtttattaattta 111  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||    
T  38222582 gtcgggaccggagaaatttattaatttagagag-ttattaattta 38222625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 44501892 - 44501849
Alignment:
Q  67 gtcgggaccggacaaatttattattttagagagtttattaattta 111  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||    
T  44501892 gtcgggaccggagaaatttattaatttagagag-ttattaattta 44501849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 124; Significance: 9e-64; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 15056336 - 15056459
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15056336 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 15056435  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  15056436 cgagtattaatttaaagagtttct 15056459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 21398627 - 21398750
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21398627 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 21398726  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  21398727 cgagtattaatttaaagagtttct 21398750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 45117997 - 45118120
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  45117997 aaaattattatcttattattttatcgaattattcaattttttacactggcctaagtcgggaccggacaaatttattattttagagagtttattaatttac 45118096  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  45118097 cgagtattaatttaaagagtttct 45118120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 19 - 135
Target Start/End: Complemental strand, 17194757 - 17194641
Alignment:
Q  19 attatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttaccgagta 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17194757 attatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttaccgagta 17194658  T
Q  119 ttaatttaaagagtttc 135  Q
    |||||||||||||||||    
T  17194657 ttaatttaaagagtttc 17194641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 1084420 - 1084297
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1084420 aaaattattatcttactattttatcgaattattcaattttttacactggcccaagtcggaaccggacaaatttattattttagagagtttattaatttac 1084321  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  1084320 cgagtattaatttaaagagtttct 1084297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 5927236 - 5927359
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  5927236 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggatcgaacaaatttattattttagagagtttattaatttac 5927335  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  5927336 cgagtattaatttaaagagtttct 5927359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 10489755 - 10489878
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10489755 aaaattattatcttattattttatcgaattatttaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 10489854  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    | ||||||||||||||||||||||    
T  10489855 caagtattaatttaaagagtttct 10489878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 14678468 - 14678591
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||    
T  14678468 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggagcgaacaaatttattattttagagagtttattaatttac 14678567  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  14678568 cgagtattaatttaaagagtttct 14678591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 49545499 - 49545376
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||||||    
T  49545499 aaaattattatcttattattttatcgaattattcaattttttacactgacccaaatcaggaccggacaaatttattattttagagagtttattaatttac 49545400  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  49545399 cgagtattaatttaaagagtttct 49545376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 45108290 - 45108388
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaattta 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45108290 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaattta 45108388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 27181882 - 27181784
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaattta 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  27181882 aaaattattatcttattattttatcgaattattcaattttttacactggctcaagtcgggaccggacaaatttattattttagagagtttattaattta 27181784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 54072629 - 54072750
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||| || |||||||||||||| ||||| ||||||| |||| ||||||||||||||||  |||||||||||||||||    
T  54072629 aaaattattatcttattattttatcgagtttttcaattttttacattggcctaagtcggaaccgaacaaatttattatttt--agagtttattaatttac 54072726  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  54072727 cgagtattaatttaaagagtttct 54072750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 1086396 - 1086353
Alignment:
Q  67 gtcgggaccggacaaatttattattttagagagtttattaattta 111  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||    
T  1086396 gtcgggaccggagaaatttattaatttagagag-ttattaattta 1086353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 5925970 - 5926013
Alignment:
Q  67 gtcgggaccggacaaatttattattttagagagtttattaattta 111  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||    
T  5925970 gtcgggaccggagaaatttattaatttagagag-ttattaattta 5926013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 10484866 - 10484909
Alignment:
Q  67 gtcgggaccggacaaatttattattttagagagtttattaattta 111  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||    
T  10484866 gtcgggaccggagaaatttattaatttagagag-ttattaattta 10484909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 14676552 - 14676595
Alignment:
Q  67 gtcgggaccggacaaatttattattttagagagtttattaattta 111  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||    
T  14676552 gtcgggaccggagaaatttattaatttagagag-ttattaattta 14676595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 124; Significance: 9e-64; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 3863804 - 3863927
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3863804 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 3863903  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  3863904 cgagtattaatttaaagagtttct 3863927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 27644366 - 27644243
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27644366 aaaattattatcttattattttatcgaattattcaattttttacactggtccaagtcgggaccggacaaatttattattttagagagtttattaatttac 27644267  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  27644266 cgagtattaatttaaagagtttct 27644243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 38516990 - 38516866
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38516990 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 38516891  T
Q  113 c-gagtattaatttaaagagtttct 136  Q
    | |||||||||||||||||||||||    
T  38516890 ctgagtattaatttaaagagtttct 38516866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 20395080 - 20395203
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  20395080 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaattcattattttagagagtttattaatttac 20395179  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    |||| |||||||||||||||||||    
T  20395180 cgaggattaatttaaagagtttct 20395203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 34946916 - 34947039
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||| |||||||||||||||||||||||||||||||||    
T  34946916 aaaattattatcttattattttatcgaattatccaattttttacactggcccaagttgggatcggataaatttattattttagagagtttattaatttac 34947015  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    |||||||||||||||||| |||||    
T  34947016 cgagtattaatttaaagaatttct 34947039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 49529853 - 49529975
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  49529853 aaaattattatcttattattttatcgagtt-ttcaattttttacattggcccaagtcgggacctgacaaatttattattttagagagtttattaatttac 49529951  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  49529952 cgagtattaatttaaagagtttct 49529975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 28392713 - 28392590
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||| || ||||| |||||||||||||| ||||  |||||||||||||| |||||||||||||||||||||||||||||||||    
T  28392713 aaaattattatcttattatttcattgaatttttcaattttttacattggcttaagtcgggaccggataaatttattattttagagagtttattaatttac 28392614  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  28392613 cgagtattaatttaaagagtttct 28392590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 44552128 - 44552047
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattatttta 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44552128 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattaattta 44552047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 255 - 299
Target Start/End: Complemental strand, 23553055 - 23553011
Alignment:
Q  255 tatgtcaagcacatcggagaattccagcaacttctctttattaca 299  Q
    |||||||||||||||| |||||||||| |||||||||||||||||    
T  23553055 tatgtcaagcacatcgcagaattccagtaacttctctttattaca 23553011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 100 - 136
Target Start/End: Complemental strand, 44552058 - 44552022
Alignment:
Q  100 tttattaatttaccgagtattaatttaaagagtttct 136  Q
    |||||||||||||||||||||||||||||||||||||    
T  44552058 tttattaatttaccgagtattaatttaaagagtttct 44552022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 10542167 - 10542210
Alignment:
Q  67 gtcgggaccggacaaatttattattttagagagtttattaattta 111  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||    
T  10542167 gtcgggaccggagaaatttattagtttagagag-ttattaattta 10542210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 20394302 - 20394345
Alignment:
Q  67 gtcgggaccggacaaatttattattttagagagtttattaattta 111  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||    
T  20394302 gtcgggaccggagaaatttattaatttagagag-ttattaattta 20394345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 38518966 - 38518923
Alignment:
Q  67 gtcgggaccggacaaatttattattttagagagtttattaattta 111  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||    
T  38518966 gtcgggaccggagaaatttattaatttagagag-ttattaattta 38518923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 44554104 - 44554061
Alignment:
Q  67 gtcgggaccggacaaatttattattttagagagtttattaattta 111  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||    
T  44554104 gtcgggaccggagaaatttattaatttagagag-ttattaattta 44554061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 124; Significance: 9e-64; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 7355341 - 7355218
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7355341 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 7355242  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  7355241 cgagtattaatttaaagagtttct 7355218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 3536288 - 3536411
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3536288 aaaattattatcttattattttatcgaattatttaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 3536387  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  3536388 cgagtattaatttaaagagtttct 3536411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 30112017 - 30111894
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30112017 aaaattattatcttattattttatcgagttattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 30111918  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  30111917 cgagtattaatttaaagagtttct 30111894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 30123304 - 30123181
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30123304 aaaattattatcttattattttatcgagttattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 30123205  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  30123204 cgagtattaatttaaagagtttct 30123181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 30877355 - 30877232
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30877355 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagttgggaccggacaaatttattattttagagagtttattaatttac 30877256  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  30877255 cgagtattaatttaaagagtttct 30877232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 12534349 - 12534472
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||    
T  12534349 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagttgagaccggacaaatttattattttagagagtttattaatttac 12534448  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  12534449 cgagtattaatttaaagagtttct 12534472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 2273973 - 2274096
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||| |||||||||||||||||||||| |||||||||||||||||    
T  2273973 aaaattattatcttattattttatcgaattactcaattttttacactgactcaagtcggaaccggacaaatttattattttaaagagtttattaatttac 2274072  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    |||||||||||||||||| |||||    
T  2274073 cgagtattaatttaaagaatttct 2274096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 43379994 - 43379871
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||| | || |||||||| ||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43379994 aaaattattatcttattattttatcaagtttttcaatttcttaaattggcccaagtcgggatcggacaaatttattattttagagagtttattaatttac 43379895  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  43379894 cgagtattaatttaaagagtttct 43379871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 3534311 - 3534354
Alignment:
Q  67 gtcgggaccggacaaatttattattttagagagtttattaattta 111  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||    
T  3534311 gtcgggaccggagaaatttattaatttagagag-ttattaattta 3534354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 124; Significance: 9e-64; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 7391206 - 7391329
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7391206 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 7391305  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  7391306 cgagtattaatttaaagagtttct 7391329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 41775301 - 41775424
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41775301 aaaattattatcttattattttatcgaattattcaattttttacactagcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 41775400  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  41775401 cgagtattaatttaaagagtttct 41775424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 16640652 - 16640529
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  16640652 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccagacaaatttattattttagagagtttattaatttac 16640553  T
Q  113 cgagtattaatttaaagagtttct 136  Q
     |||||||||||||||||||||||    
T  16640552 tgagtattaatttaaagagtttct 16640529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 22146542 - 22146419
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| |     
T  22146542 aaaattattatcttattattttatcgaattattcaattttttacactggcctaagtcggaaccggacaaatttattattttagagagtttattaattcat 22146443  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  22146442 cgagtattaatttaaagagtttct 22146419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 29650928 - 29651051
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| || |||||||||||||||||||||||||||||||||||    
T  29650928 aaaattattatcttattattttatcgaattattcaattttttacactagccaaagtcgggaacgaacaaatttattattttagagagtttattaatttac 29651027  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    |||||||||||||||| |||||||    
T  29651028 cgagtattaatttaaaaagtttct 29651051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 8363804 - 8363902
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaattta 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  8363804 aaaattattatcttattattttatcgaattattcaattttttacactggctcaagtcgggaccggacaaatttattattttagagagtttattaattta 8363902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 7390882 - 7390925
Alignment:
Q  67 gtcgggaccggacaaatttattattttagagagtttattaattta 111  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||    
T  7390882 gtcgggaccggagaaatttattaatttagagag-ttattaattta 7390925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 29658182 - 29658225
Alignment:
Q  67 gtcgggaccggacaaatttattattttagagagtttattaattta 111  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||    
T  29658182 gtcgggaccggagaaatttattaatttagagag-ttattaattta 29658225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 41773325 - 41773368
Alignment:
Q  67 gtcgggaccggacaaatttattattttagagagtttattaattta 111  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||    
T  41773325 gtcgggaccggagaaatttattaatttagagag-ttattaattta 41773368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 37897 - 37774
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37897 aaaattattatcttattattttatcgaattattcaactttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 37798  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  37797 cgagtattaatttaaagagtttct 37774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 120; Significance: 2e-61; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 10268035 - 10267912
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  10268035 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttat 10267936  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  10267935 cgagtattaatttaaagagtttct 10267912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 336917 - 337040
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  336917 aaaattattatcttattattttatcgaattattcaattttttacactagcccaagtcgggatcggacaaatttattattttagagagtttattaatttac 337016  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  337017 cgagtattaatttaaagagtttct 337040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 25519847 - 25519970
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25519847 aaaattattatcttattattttatcaaattattcaattttttacactggtccaagtcgggaccggacaaatttattattttagagagtttattaatttac 25519946  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  25519947 cgagtattaatttaaagagtttct 25519970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 43311239 - 43311116
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  43311239 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttat 43311140  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||| ||||||||||||||||||||    
T  43311139 cgaatattaatttaaagagtttct 43311116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 10902386 - 10902509
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||||||||||    
T  10902386 aaaattattatcttattattttatcgaattattcaattttttacactgacccaagtcggaaccggacaaatttattattttatagagtttattaatttac 10902485  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  10902486 cgagtattaatttaaagagtttct 10902509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 3524060 - 3524183
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |  |||||||||||||||||||||||||||||||||||    
T  3524060 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcggtatcttacaaatttattattttagagagtttattaatttac 3524159  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  3524160 cgagtattaatttaaagagtttct 3524183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 11806347 - 11806470
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||| || |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11806347 aaaattattatcttattattttatcgagtttttcaatttcttacattggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 11806446  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  11806447 cgagtattaatttaaagagtttct 11806470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 32592482 - 32592605
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | | || || |||||||||||||||||||||||||||||||||||    
T  32592482 aaaattattatcttattattttatcgaattattcaattttttacactggcccaatttgtgatcgtacaaatttattattttagagagtttattaatttac 32592581  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  32592582 cgagtattaatttaaagagtttct 32592605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 4122296 - 4122419
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||| || |||||||| ||||| |||||||||||||||||||| ||||||||||||||| |||||||||||||||||    
T  4122296 aaaattattatcttattattttatcgagtttttcaatttcttacattggcccaagtcgggaccggataaatttattattttaaagagtttattaatttac 4122395  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  4122396 cgagtattaatttaaagagtttct 4122419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 334982 - 335025
Alignment:
Q  67 gtcgggaccggacaaatttattattttagagagtttattaattta 111  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||    
T  334982 gtcgggaccggagaaatttattaatttagagag-ttattaattta 335025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 10901968 - 10902011
Alignment:
Q  67 gtcgggaccggacaaatttattattttagagagtttattaattta 111  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||    
T  10901968 gtcgggaccggagaaatttattaatttagagag-ttattaattta 10902011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Original strand, 25518585 - 25518628
Alignment:
Q  67 gtcgggaccggacaaatttattattttagagagtttattaattta 111  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||    
T  25518585 gtcgggaccggagaaatttattaatttagagag-ttattaattta 25518628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 43315030 - 43314987
Alignment:
Q  67 gtcgggaccggacaaatttattattttagagagtttattaattta 111  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||    
T  43315030 gtcgggaccggagaaatttattaatttagagag-ttattaattta 43314987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 116; Significance: 5e-59; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 136
Target Start/End: Original strand, 14220361 - 14220484
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||    
T  14220361 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagacgggaccggacaaatttattattttaaagagtttattaatttac 14220460  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  14220461 cgagtattaatttaaagagtttct 14220484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 30702933 - 30702810
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||     
T  30702933 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttaaagagtttattaatttat 30702834  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  30702833 cgagtattaatttaaagagtttct 30702810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 13 - 136
Target Start/End: Complemental strand, 5309169 - 5309046
Alignment:
Q  13 aaaattattatcttattattttatcgaattattcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttac 112  Q
    ||||||||||||||||||||||||||| || |||||||| ||||| ||||| || |||| |||||||||||||||||||||||||| |||||||||||||    
T  5309169 aaaattattatcttattattttatcgagtttttcaatttcttacattggcctaaatcggaaccggacaaatttattattttagagaatttattaatttac 5309070  T
Q  113 cgagtattaatttaaagagtttct 136  Q
    ||||||||||||||||||||||||    
T  5309069 cgagtattaatttaaagagtttct 5309046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 44 - 136
Target Start/End: Complemental strand, 21351173 - 21351081
Alignment:
Q  44 ttcaattttttacactggcccaagtcgggaccggacaaatttattattttagagagtttattaatttaccgagtattaatttaaagagtttct 136  Q
    |||||||||||||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  21351173 ttcaattttttacattggcccaagtcgggatcagacaaatttattattttagagagtttattaatttaccgagtattaaattaaagagtttct 21351081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 30704908 - 30704865
Alignment:
Q  67 gtcgggaccggacaaatttattattttagagagtttattaattta 111  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||    
T  30704908 gtcgggaccggagaaatttattaatttagagag-ttattaattta 30704865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 111
Target Start/End: Complemental strand, 16047 - 16004
Alignment:
Q  67 gtcgggaccggacaaatttattattttagagagtttattaattta 111  Q
    |||||||||||| |||||||||| ||||||||| |||||||||||    
T  16047 gtcgggaccggagaaatttattaatttagagag-ttattaattta 16004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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