View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17720_low_5 (Length: 229)

Name: NF17720_low_5
Description: NF17720
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17720_low_5
NF17720_low_5
[»] chr1 (22 HSPs)
chr1 (134-210)||(47392222-47392298)
chr1 (19-80)||(47392107-47392168)
chr1 (142-209)||(23257180-23257247)
chr1 (142-210)||(49651936-49652004)
chr1 (142-210)||(23320532-23320600)
chr1 (142-209)||(22344867-22344934)
chr1 (147-210)||(29067146-29067209)
chr1 (160-210)||(21326583-21326633)
chr1 (160-209)||(32539145-32539194)
chr1 (160-209)||(38646694-38646743)
chr1 (170-210)||(48654995-48655035)
chr1 (147-210)||(27469662-27469725)
chr1 (162-209)||(30853744-30853791)
chr1 (147-210)||(37662307-37662370)
chr1 (163-209)||(10264822-10264868)
chr1 (161-210)||(10877457-10877506)
chr1 (159-208)||(22032047-22032096)
chr1 (150-207)||(26199680-26199737)
chr1 (161-210)||(44562703-44562752)
chr1 (170-206)||(630742-630778)
chr1 (170-210)||(5832354-5832394)
chr1 (170-210)||(12967686-12967726)
[»] chr2 (26 HSPs)
chr2 (142-209)||(16879920-16879987)
chr2 (142-209)||(16992053-16992120)
chr2 (142-210)||(11931006-11931074)
chr2 (142-209)||(3603077-3603144)
chr2 (147-210)||(41842045-41842108)
chr2 (149-210)||(7443520-7443581)
chr2 (161-210)||(44441493-44441542)
chr2 (160-209)||(44951529-44951578)
chr2 (142-210)||(7640310-7640378)
chr2 (142-209)||(3390524-3390591)
chr2 (160-207)||(10589177-10589224)
chr2 (159-210)||(17118767-17118818)
chr2 (142-209)||(25771537-25771604)
chr2 (160-210)||(13268682-13268732)
chr2 (160-210)||(17068869-17068919)
chr2 (160-210)||(25622999-25623049)
chr2 (160-210)||(29734300-29734350)
chr2 (160-210)||(43929254-43929304)
chr2 (147-210)||(15071503-15071566)
chr2 (142-209)||(27024094-27024161)
chr2 (159-210)||(37883762-37883813)
chr2 (160-210)||(10589205-10589255)
chr2 (160-210)||(17074866-17074916)
chr2 (160-209)||(19580957-19581006)
chr2 (160-209)||(25237281-25237330)
chr2 (166-207)||(44562588-44562629)
[»] chr7 (19 HSPs)
chr7 (160-210)||(13008627-13008677)
chr7 (147-210)||(43483697-43483760)
chr7 (142-209)||(47749826-47749893)
chr7 (147-210)||(23177537-23177600)
chr7 (142-209)||(40775359-40775426)
chr7 (161-210)||(14707694-14707743)
chr7 (161-209)||(7986003-7986051)
chr7 (147-195)||(9933944-9933992)
chr7 (166-210)||(10250437-10250481)
chr7 (142-210)||(26017612-26017680)
chr7 (147-210)||(14734003-14734066)
chr7 (142-209)||(42490795-42490862)
chr7 (160-210)||(30992777-30992827)
chr7 (160-210)||(44681570-44681620)
chr7 (147-208)||(135101-135162)
chr7 (171-208)||(22751559-22751596)
chr7 (147-207)||(5025013-5025073)
chr7 (142-210)||(23732347-23732415)
chr7 (142-210)||(43807104-43807172)
[»] chr3 (16 HSPs)
chr3 (161-210)||(22893669-22893718)
chr3 (142-209)||(29182563-29182630)
chr3 (161-210)||(29776644-29776693)
chr3 (161-209)||(40365337-40365385)
chr3 (142-209)||(43029775-43029842)
chr3 (160-210)||(40461949-40461999)
chr3 (149-210)||(913270-913331)
chr3 (149-210)||(22844151-22844212)
chr3 (149-210)||(25939433-25939494)
chr3 (173-210)||(32237950-32237987)
chr3 (149-210)||(39340298-39340359)
chr3 (150-210)||(40797133-40797193)
chr3 (142-209)||(1165351-1165418)
chr3 (160-207)||(4019705-4019752)
chr3 (142-209)||(33977880-33977946)
chr3 (160-210)||(1220201-1220251)
[»] chr6 (8 HSPs)
chr6 (142-210)||(32804387-32804455)
chr6 (147-207)||(5417155-5417215)
chr6 (147-203)||(15128114-15128170)
chr6 (142-210)||(23843378-23843446)
chr6 (142-209)||(13234063-13234130)
chr6 (147-208)||(10744680-10744741)
chr6 (160-209)||(12576436-12576484)
chr6 (160-209)||(34020715-34020764)
[»] chr8 (22 HSPs)
chr8 (142-209)||(9270113-9270180)
chr8 (147-208)||(37659063-37659124)
chr8 (142-210)||(8054761-8054829)
chr8 (163-210)||(5989743-5989790)
chr8 (142-209)||(44295408-44295475)
chr8 (160-210)||(26937635-26937685)
chr8 (142-195)||(41996637-41996690)
chr8 (163-210)||(11298714-11298761)
chr8 (147-210)||(12248668-12248731)
chr8 (160-195)||(17019228-17019263)
chr8 (160-195)||(17549665-17549700)
chr8 (142-209)||(32412882-32412949)
chr8 (160-210)||(5917696-5917746)
chr8 (145-195)||(9992762-9992812)
chr8 (161-211)||(12244169-12244219)
chr8 (160-210)||(14327589-14327639)
chr8 (160-210)||(16808986-16809036)
chr8 (142-195)||(7281096-7281149)
chr8 (160-209)||(27534367-27534416)
chr8 (149-210)||(32256675-32256736)
chr8 (147-207)||(1215296-1215356)
chr8 (142-210)||(5457163-5457231)
[»] chr5 (16 HSPs)
chr5 (160-210)||(20146170-20146220)
chr5 (142-209)||(29310309-29310376)
chr5 (142-209)||(31645921-31645988)
chr5 (147-209)||(6887133-6887195)
chr5 (147-208)||(20270811-20270872)
chr5 (173-210)||(24288880-24288917)
chr5 (173-210)||(24373305-24373342)
chr5 (142-206)||(10924091-10924155)
chr5 (147-210)||(22397502-22397565)
chr5 (147-210)||(33486523-33486586)
chr5 (160-207)||(34866537-34866584)
chr5 (149-195)||(8812120-8812166)
chr5 (160-210)||(41358149-41358199)
chr5 (160-210)||(41988262-41988312)
chr5 (142-195)||(9034911-9034964)
chr5 (142-210)||(4726882-4726950)
[»] chr4 (17 HSPs)
chr4 (149-207)||(30416578-30416636)
chr4 (142-210)||(23067802-23067870)
chr4 (142-209)||(9661945-9662012)
chr4 (142-209)||(14542467-14542534)
chr4 (147-210)||(38434696-38434759)
chr4 (147-209)||(4634380-4634442)
chr4 (147-209)||(32189077-32189139)
chr4 (161-210)||(46716848-46716897)
chr4 (147-208)||(46728876-46728937)
chr4 (170-209)||(9474494-9474533)
chr4 (147-210)||(33020879-33020942)
chr4 (160-210)||(44021525-44021575)
chr4 (142-195)||(12519748-12519801)
chr4 (147-208)||(15729937-15729998)
chr4 (163-208)||(16991985-16992030)
chr4 (160-209)||(47466015-47466064)
chr4 (162-210)||(14346543-14346591)
[»] scaffold0722 (1 HSPs)
scaffold0722 (142-210)||(5480-5548)
[»] scaffold0316 (1 HSPs)
scaffold0316 (142-209)||(12158-12225)
[»] scaffold0150 (1 HSPs)
scaffold0150 (142-195)||(10280-10333)
[»] scaffold0157 (1 HSPs)
scaffold0157 (142-195)||(1110-1163)
[»] scaffold0024 (1 HSPs)
scaffold0024 (142-195)||(36621-36674)
[»] scaffold0012 (1 HSPs)
scaffold0012 (160-209)||(244746-244795)


Alignment Details
Target: chr1 (Bit Score: 69; Significance: 4e-31; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 47392222 - 47392298
Alignment:
Q  134 attggaaattatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||    
T  47392222 attggaaattatcttgtgatttcactgtcttagcgtgacgttggtttgttcgtcgtctttgtgcggcgttgtttgtc 47392298  T

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Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 47392107 - 47392168
Alignment:
Q  19 ggacatcactttttatattagtatatatagactacatatgttttcttcctcaagatgagata 80  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47392107 ggacatcactttttatattagtatatatagactacatatgttttcttcctcaagatgagata 47392168  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 23257180 - 23257247
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    ||||||||||||||||  ||||| ||| |||||||||||||||||||||||||| || ||||||||||    
T  23257180 ttatcttgtgatttcatcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgt 23257247  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 49651936 - 49652004
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||| ||||||||||   ||||| |||||||||| |||||||||||||||||||||| |||||||||||    
T  49651936 ttattttgtgatttcgtcgtcttcgtgtgacgttcgtttgttcgtcgtctttgtacgacgttgtttgtc 49652004  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 23320532 - 23320600
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||| ||||||||||   ||||| |||||||||||||||||||||||||||||| || |||| ||||||    
T  23320532 ttattttgtgatttcgtcgtcttcgtgtgacgttggtttgttcgtcgtctttgtgcgacgttatttgtc 23320600  T

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Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 22344934 - 22344867
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    |||| ||||||||||   ||||| ||| |||||||||||||||||||||||||| || ||||||||||    
T  22344934 ttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgt 22344867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 29067146 - 29067209
Alignment:
Q  147 ttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||||||||||   |||||||| ||||||| |||||||||||||||||| | ||||||||||||    
T  29067146 ttgtgatttcatcttcttagtgcgacgttgttttgttcgtcgtctttgtgcagcgttgtttgtc 29067209  T

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Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 21326583 - 21326633
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||| ||||||| |||||||||||||||||||||| || |||||||||||    
T  21326583 gtcttcgtgtgacattggtttgttcgtcgtctttgtgcgacgttgtttgtc 21326633  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 32539194 - 32539145
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    ||||||||  |||||||||||||||||||||||||| || ||||||||||    
T  32539194 gtcttagtacgacgttggtttgttcgtcgtctttgtgcgacgttgtttgt 32539145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 38646694 - 38646743
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    ||||| ||| |||||||||||||||||||||||||| || ||||||||||    
T  38646694 gtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgt 38646743  T

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Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 48655035 - 48654995
Alignment:
Q  170 gacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||||||||||||||||||||||||  |||||||||||    
T  48655035 gacgttggtttgttcgtcgtctttgtacaacgttgtttgtc 48654995  T

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Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 27469725 - 27469662
Alignment:
Q  147 ttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||||||   ||||||||| ||||||| ||||||| |||||||||| || |||||||||||    
T  27469725 ttgtgatttcgtcgtcttagtgcgacgttgttttgttcatcgtctttgtgcgacgttgtttgtc 27469662  T

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Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 162 - 209
Target Start/End: Complemental strand, 30853791 - 30853744
Alignment:
Q  162 cttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    ||||||| ||||||||||||||| |||| ||||| |||||||||||||    
T  30853791 cttagtgcgacgttggtttgttcatcgtgtttgtgcggcgttgtttgt 30853744  T

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Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 37662307 - 37662370
Alignment:
Q  147 ttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||||| | |||||||||| ||||||| |||||| |||||||||||  || ||||||||||    
T  37662307 ttgtgattttattgtcttagtgcgacgttgttttgtttgtcgtctttgtgaggtgttgtttgtc 37662370  T

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Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 209
Target Start/End: Original strand, 10264822 - 10264868
Alignment:
Q  163 ttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    |||||| |||||||||||||||||||||||||| |  ||||||||||    
T  10264822 ttagtgcgacgttggtttgttcgtcgtctttgtgcaacgttgtttgt 10264868  T

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Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 10877457 - 10877506
Alignment:
Q  161 tcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||||||| ||||||| ||||||||| ||||||||  |||||||||||||    
T  10877457 tcttagtgcgacgttgttttgttcgttgtctttgtgtggcgttgtttgtc 10877506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 159 - 208
Target Start/End: Complemental strand, 22032096 - 22032047
Alignment:
Q  159 tgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttg 208  Q
    |||||||||| || ||||||||||||||||||||| |  |||||||||||    
T  22032096 tgtcttagtgcgatgttggtttgttcgtcgtctttatgtggcgttgtttg 22032047  T

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Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 26199680 - 26199737
Alignment:
Q  150 tgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgttt 207  Q
    ||||||||  ||||||||| ||| ||| |||||||||||||||||| || ||||||||    
T  26199680 tgatttcatcgtcttagtgcgacattgttttgttcgtcgtctttgtgcgacgttgttt 26199737  T

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Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 44562752 - 44562703
Alignment:
Q  161 tcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||| ||| |||||||||||||||||||||||||| || | |||||||||    
T  44562752 tcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacattgtttgtc 44562703  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 630778 - 630742
Alignment:
Q  170 gacgttggtttgttcgtcgtctttgtacggcgttgtt 206  Q
    |||||||||||||||||||||||||| || |||||||    
T  630778 gacgttggtttgttcgtcgtctttgtgcgacgttgtt 630742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Original strand, 5832354 - 5832394
Alignment:
Q  170 gacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||||||||||||||||||| ||||| || |||||||||||    
T  5832354 gacgttggtttgttcgtcgtatttgtgcgacgttgtttgtc 5832394  T

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Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 210
Target Start/End: Complemental strand, 12967726 - 12967686
Alignment:
Q  170 gacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||||||||||||||||||||||||| || | |||||||||    
T  12967726 gacgttggtttgttcgtcgtctttgtgcgacattgtttgtc 12967686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 16879987 - 16879920
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    ||||||||||||||||  ||||| ||| |||||||||||||||||||||||||| || ||||||||||    
T  16879987 ttatcttgtgatttcatcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgt 16879920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 16992120 - 16992053
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    ||||||||||||||||  ||||| ||| |||||||||||||||||||||||||| || ||||||||||    
T  16992120 ttatcttgtgatttcatcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgt 16992053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 11931006 - 11931074
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||| |||||||||||  ||||||||||||||||||||||||||| ||||| ||| || ||||||||||    
T  11931006 ttattttgtgatttcatcgtcttagtgtgacgttggtttgttcgttgtcttcgtaaggagttgtttgtc 11931074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 3603077 - 3603144
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    |||| |||||||||||  ||||| ||| |||||||||||||||||||||||||| || ||||||||||    
T  3603077 ttattttgtgatttcatcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgt 3603144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 41842045 - 41842108
Alignment:
Q  147 ttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||||||   ||||||||| |||||||||||||||||||||||||| | ||||||||||||    
T  41842045 ttgtgatttcgtcgtcttagtgcgacgttggtttgttcgtcgtctttgtgctgcgttgtttgtc 41842108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 7443581 - 7443520
Alignment:
Q  149 gtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||||||| | ||||||||| ||||||| |||||||||||||||||| || |||||||||||    
T  7443581 gtgatttcgccgtcttagtgcgacgttgttttgttcgtcgtctttgtgcgacgttgtttgtc 7443520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 44441493 - 44441542
Alignment:
Q  161 tcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||||||| |||||| |||||||||||||||| |||||||||||||||||    
T  44441493 tcttagtgcgacgtttgtttgttcgtcgtcttcgtacggcgttgtttgtc 44441542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 44951529 - 44951578
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    ||||| ||| ||||||||||||||||||||||||||||| ||||||||||    
T  44951529 gtcttcgtgcgacgttggtttgttcgtcgtctttgtacgacgttgtttgt 44951578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 7640378 - 7640310
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||| ||||||||||   ||||| ||| |||||||||||||||||||||||||| || |||||||||||    
T  7640378 ttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgtc 7640310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 3390524 - 3390591
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    |||| ||||||||||   ||||| ||| |||||||||||||||||||||||||| || ||||||||||    
T  3390524 ttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgt 3390591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 10589177 - 10589224
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgttt 207  Q
    ||||||||||||||||| |||||||||||||||||| || ||||||||    
T  10589177 gtcttagtgtgacgttgttttgttcgtcgtctttgtgcgacgttgttt 10589224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 210
Target Start/End: Complemental strand, 17118818 - 17118767
Alignment:
Q  159 tgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||||||||| ||||||| |||||||||||||||||| ||| ||||||||||    
T  17118818 tgtcttagtgcgacgttgttttgttcgtcgtctttgtgcggtgttgtttgtc 17118767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 25771537 - 25771604
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    |||| ||||||||||   ||||| ||| |||||||||||||||||||||||||| || ||||||||||    
T  25771537 ttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgt 25771604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 13268682 - 13268732
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||||| ||||||| |||||||||||||||||| || |||||||||||    
T  13268682 gtcttagtgcgacgttgttttgttcgtcgtctttgtgcgacgttgtttgtc 13268732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 17068919 - 17068869
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||||| ||||||| |||||||||||||||||| ||| ||||||||||    
T  17068919 gtcttagtgcgacgttgttttgttcgtcgtctttgtgcggtgttgtttgtc 17068869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 25623049 - 25622999
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||||| ||| ||| |||||||||||||||||| ||||||||||||||    
T  25623049 gtcttagtgcgacattgttttgttcgtcgtctttgtgcggcgttgtttgtc 25622999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 29734300 - 29734350
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||||||||||||| |||||| |||||| ||||||| |||||||||||    
T  29734300 gtcttagtgtgacgttgttttgtttgtcgtcgttgtacgacgttgtttgtc 29734350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 43929304 - 43929254
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||| ||| |||||||||||||||||||||||||| || |||||||||||    
T  43929304 gtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgtc 43929254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 15071566 - 15071503
Alignment:
Q  147 ttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||| |||  ||||||||  ||||||  ||||||||||||||||||||| |||||||||||    
T  15071566 ttgtgatatcatggtcttagtacgacgttattttgttcgtcgtctttgtacgtcgttgtttgtc 15071503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 27024161 - 27024094
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    |||| ||||||||||   ||||| ||| ||| |||||||||||||||||||||| || ||||||||||    
T  27024161 ttattttgtgatttcgtcgtcttcgtgcgacattggtttgttcgtcgtctttgtgcgacgttgtttgt 27024094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 210
Target Start/End: Original strand, 37883762 - 37883813
Alignment:
Q  159 tgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||||||||| ||||||| |||||||||||||||||| ||  ||||||||||    
T  37883762 tgtcttagtgcgacgttgttttgttcgtcgtctttgtgcgatgttgtttgtc 37883813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 10589205 - 10589255
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||| ||| ||||||| |||||||||||||||||| || |||||||||||    
T  10589205 gtctttgtgcgacgttgttttgttcgtcgtctttgtgcgacgttgtttgtc 10589255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 17074916 - 17074866
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||||| ||||||| ||||| |||||||||||| ||| ||||||||||    
T  17074916 gtcttagtgcgacgttgttttgtccgtcgtctttgtgcggtgttgtttgtc 17074866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 19581006 - 19580957
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    ||||||||| ||| ||| |||||||||||||||||| || ||||||||||    
T  19581006 gtcttagtgcgacattgttttgttcgtcgtctttgtgcgacgttgtttgt 19580957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 25237330 - 25237281
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    ||||||||| ||||||| |||||||||||||||||| || | ||||||||    
T  25237330 gtcttagtgcgacgttgttttgttcgtcgtctttgtgcgacattgtttgt 25237281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 44562629 - 44562588
Alignment:
Q  166 gtgtgacgttggtttgttcgtcgtctttgtacggcgttgttt 207  Q
    |||||| ||||||||||||||||||||||| ||| |||||||    
T  44562629 gtgtgatgttggtttgttcgtcgtctttgtgcggtgttgttt 44562588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 13008677 - 13008627
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  13008677 gtcttagtgcgacgttggtttgttcgtcgtctttgtgcggcgttgtttgtc 13008627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 43483697 - 43483760
Alignment:
Q  147 ttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||||||||| | ||||||||| ||||||| |||||||||||||||||| || |||||||||||    
T  43483697 ttgtgatttcgccgtcttagtgcgacgttgttttgttcgtcgtctttgtgcgacgttgtttgtc 43483760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 47749826 - 47749893
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    |||| ||||||||||  |||||| ||| |||||||||||||||||||||||||| || ||||||||||    
T  47749826 ttattttgtgatttcgttgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgt 47749893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 23177600 - 23177537
Alignment:
Q  147 ttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||||||||| | ||||||||| ||| ||||||| |||||||||||||| ||||||||| ||||    
T  23177600 ttgtgatttctccgtcttagtgcgaccttggttttttcgtcgtctttgtgcggcgttgtctgtc 23177537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 40775359 - 40775426
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    |||| ||||||||||   ||||| ||| |||||||||||||||||||||||||| || ||||||||||    
T  40775359 ttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgt 40775426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 14707694 - 14707743
Alignment:
Q  161 tcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||||||||| |||||||||||| ||||| ||||| ||||||||||||||    
T  14707694 tcttagtgtggcgttggtttgttagtcgtttttgtgcggcgttgtttgtc 14707743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 7986003 - 7986051
Alignment:
Q  161 tcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    |||| ||||||||||||||||||||||||||||||  | ||||||||||    
T  7986003 tcttcgtgtgacgttggtttgttcgtcgtctttgtgtgacgttgtttgt 7986051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 195
Target Start/End: Original strand, 9933944 - 9933992
Alignment:
Q  147 ttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgt 195  Q
    |||||||||| | ||||||||| ||||||| ||||||||||||||||||    
T  9933944 ttgtgatttcgccgtcttagtgcgacgttgttttgttcgtcgtctttgt 9933992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 10250481 - 10250437
Alignment:
Q  166 gtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||||||| ||||||||||||||||||  |||||||||||||    
T  10250481 gtgtgacgttgttttgttcgtcgtctttgtgtggcgttgtttgtc 10250437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 26017680 - 26017612
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||| ||||||||||   ||||| ||| || ||||||||||||||||||||||| || |||||||||||    
T  26017680 ttattttgtgatttcgtcgtcttcgtgcgatgttggtttgttcgtcgtctttgtgcgacgttgtttgtc 26017612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 14734066 - 14734003
Alignment:
Q  147 ttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||||||   ||||||||| ||||||| |||||| ||||||||||| || |||||||||||    
T  14734066 ttgtgatttcgtcgtcttagtgcgacgttgttttgtttgtcgtctttgtgcgacgttgtttgtc 14734003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 42490795 - 42490862
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    |||| |||||||||||  ||||| ||||||||||||||||||||| | |||||| || | ||||||||    
T  42490795 ttattttgtgatttcatcgtcttcgtgtgacgttggtttgttcgttgcctttgtgcgacattgtttgt 42490862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 30992827 - 30992777
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||| ||| ||||||| |||||||||||||||||| || |||||||||||    
T  30992827 gtcttcgtgcgacgttgatttgttcgtcgtctttgtgcgacgttgtttgtc 30992777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 44681570 - 44681620
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||| ||||||||||||||||||||||||| |||||  | |||||||||||    
T  44681570 gtctcagtgtgacgttggtttgttcgtcgtttttgtgggacgttgtttgtc 44681620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 135162 - 135101
Alignment:
Q  147 ttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttg 208  Q
    ||||||||||   ||||| ||| |||||||||||||||||||| ||||| || |||||||||    
T  135162 ttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtttttgtgcgacgttgtttg 135101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 171 - 208
Target Start/End: Original strand, 22751559 - 22751596
Alignment:
Q  171 acgttggtttgttcgtcgtctttgtacggcgttgtttg 208  Q
    ||||||||||||||||||||||| | ||||||||||||    
T  22751559 acgttggtttgttcgtcgtctttatgcggcgttgtttg 22751596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 5025073 - 5025013
Alignment:
Q  147 ttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgttt 207  Q
    ||||||||||   ||||||||| ||| ||| |||||||||||||||||| || ||||||||    
T  5025073 ttgtgatttcgtcgtcttagtgcgaccttgttttgttcgtcgtctttgtgcgacgttgttt 5025013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 23732415 - 23732347
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||| ||||||||||   ||||| ||| |||||||||||||||||| ||||||| || || ||||||||    
T  23732415 ttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcatctttgtgcgtcgctgtttgtc 23732347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 43807172 - 43807104
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||| ||||||||||   ||||| ||| || ||||||||||||||| ||||||| || |||||||||||    
T  43807172 ttattttgtgatttcgtcgtcttcgtgcgatgttggtttgttcgtcatctttgtgcgacgttgtttgtc 43807104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 22893718 - 22893669
Alignment:
Q  161 tcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  22893718 tcttagtgcgacgttggtttgttcgtcatctttgtacggcgttgtttgtc 22893669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 29182630 - 29182563
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    |||| ||||||||||   ||||| |||||||||||||||||||||||||||||| || ||||||||||    
T  29182630 ttattttgtgatttcgtcgtcttcgtgtgacgttggtttgttcgtcgtctttgtgcgacgttgtttgt 29182563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 29776693 - 29776644
Alignment:
Q  161 tcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||| ||| |||||| ||||||||||||||||||||||||||||||||||    
T  29776693 tctttgtgcgacgtttgtttgttcgtcgtctttgtacggcgttgtttgtc 29776644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 161 - 209
Target Start/End: Original strand, 40365337 - 40365385
Alignment:
Q  161 tcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    ||||| || |||||||||||||| |||||||||||||||||||||||||    
T  40365337 tcttaatgcgacgttggtttgtttgtcgtctttgtacggcgttgtttgt 40365385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 43029775 - 43029842
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    |||| ||||||||||   ||||| ||| |||||||||||||||||||||||||| || ||||||||||    
T  43029775 ttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgt 43029842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 40461999 - 40461949
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||||| || |||| |||||||||||||||||| ||||||||||||||    
T  40461999 gtcttagtgcgatgttgatttgttcgtcgtctttgtgcggcgttgtttgtc 40461949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 913331 - 913270
Alignment:
Q  149 gtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||||||| ||||||||||| | | ||| |||||||||||||||||| || |||||||||||    
T  913331 gtgatttcgctgtcttagtgcggcattgttttgttcgtcgtctttgtgcgacgttgtttgtc 913270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 22844151 - 22844212
Alignment:
Q  149 gtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||||||||  ||||||||| ||| ||| |||||||||||||||||| || |||||||||||    
T  22844151 gtgatttcatcgtcttagtgcgacattgttttgttcgtcgtctttgtgcgacgttgtttgtc 22844212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 25939494 - 25939433
Alignment:
Q  149 gtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||||  ||||| |||| ||||||| |||||| ||||||||||| ||||||||||||||    
T  25939494 gtgatttcgttgtctcagtgcgacgttgttttgttagtcgtctttgtgcggcgttgtttgtc 25939433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 32237987 - 32237950
Alignment:
Q  173 gttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  32237987 gttggtttgttcgtcgtctttgtgcggcgttgtttgtc 32237950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 210
Target Start/End: Original strand, 39340298 - 39340359
Alignment:
Q  149 gtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||| || ||||||||| ||| ||| |||| ||||||||||||| ||||||||||||||    
T  39340298 gtgattttaccgtcttagtgcgactttgttttgctcgtcgtctttgtgcggcgttgtttgtc 39340359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 150 - 210
Target Start/End: Original strand, 40797133 - 40797193
Alignment:
Q  150 tgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||| | ||||||||| ||| ||| |||||||||||||||||| || |||||||||||    
T  40797133 tgatttcgccgtcttagtgagacattgttttgttcgtcgtctttgtgcgacgttgtttgtc 40797193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 1165418 - 1165351
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    |||| ||||||||||   ||||| ||| |||||||||||||||||||||||||| |  ||||||||||    
T  1165418 ttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcaacgttgtttgt 1165351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 4019705 - 4019752
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgttt 207  Q
    ||||||||| |||||||  ||||||||||||||||| |||||||||||    
T  4019705 gtcttagtgcgacgttgtgttgttcgtcgtctttgtgcggcgttgttt 4019752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 33977946 - 33977880
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    |||| |||||||||||  ||||| ||| |||||||||| ||||||||||||||| || ||||||||||    
T  33977946 ttattttgtgatttcatcgtcttcgtgcgacgttggtt-gttcgtcgtctttgtgcgacgttgtttgt 33977880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 1220251 - 1220201
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||||| || |||| |||||||||||||||||| |||| |||||||||    
T  1220251 gtcttagtgcgatgttgttttgttcgtcgtctttgtgcggctttgtttgtc 1220201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 32804387 - 32804455
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||| |||||||||||  ||||||||| || |||||||||||| ||||||||||| |||||||||||||    
T  32804387 ttattttgtgatttcatcgtcttagtgagatgttggtttgttcctcgtctttgtatggcgttgtttgtc 32804455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 5417215 - 5417155
Alignment:
Q  147 ttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgttt 207  Q
    ||||||||||   ||||| ||| |||||||||||||||||||||||||| |||||||||||    
T  5417215 ttgtgatttcgtcgtctttgtgcgacgttggtttgttcgtcgtctttgtgcggcgttgttt 5417155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 147 - 203
Target Start/End: Complemental strand, 15128170 - 15128114
Alignment:
Q  147 ttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgtt 203  Q
    ||||||||||   ||||||||| |||||||||||||||||||||||||| |||||||    
T  15128170 ttgtgatttcgtcgtcttagtgcgacgttggtttgttcgtcgtctttgtgcggcgtt 15128114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 23843446 - 23843378
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||| ||||||||||   ||||| ||| |||||||||||||||||||||||||| || |||||||||||    
T  23843446 ttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgtc 23843378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 13234130 - 13234063
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    |||| ||||||||||   ||||| ||| |||||||||||||||||||||||||| || ||||||||||    
T  13234130 ttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgt 13234063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 10744680 - 10744741
Alignment:
Q  147 ttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttg 208  Q
    ||||||||||   ||||||||| ||| ||| |||||||||||||||||| || |||||||||    
T  10744680 ttgtgatttcgtcgtcttagtgcgaccttgttttgttcgtcgtctttgtgcgacgttgtttg 10744741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 12576484 - 12576436
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    ||||| |||||||||||||| ||||||||||||||| || ||||||||||    
T  12576484 gtctttgtgtgacgttggtt-gttcgtcgtctttgtgcgacgttgtttgt 12576436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 34020715 - 34020764
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    ||||||||| |||| || |||||| |||||||||||||| ||||||||||    
T  34020715 gtcttagtgcgacgctgttttgtttgtcgtctttgtacgacgttgtttgt 34020764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 9270113 - 9270180
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    |||| ||||||||||  |||||| ||| |||||||||||||||||||||||||| || ||||||||||    
T  9270113 ttattttgtgatttcgttgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgt 9270180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 37659063 - 37659124
Alignment:
Q  147 ttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttg 208  Q
    ||||||||||  |||||||||| ||| ||| ||||||||||||||||||||| |||||||||    
T  37659063 ttgtgatttcgttgtcttagtgcgaccttgttttgttcgtcgtctttgtacgacgttgtttg 37659124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 8054829 - 8054761
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||| ||||||||||   ||||| ||| |||||||||||||||||||||||||| || |||||||||||    
T  8054829 ttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgtc 8054761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 163 - 210
Target Start/End: Original strand, 5989743 - 5989790
Alignment:
Q  163 ttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||||| ||||||||| |||||||||||||||| ||||||||||||||    
T  5989743 ttagtgcgacgttggtatgttcgtcgtctttgtgcggcgttgtttgtc 5989790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 44295408 - 44295475
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    |||| ||||||||||   ||||| ||| |||||||||||||||||||||||||| || ||||||||||    
T  44295408 ttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgt 44295475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 26937635 - 26937685
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||||| | ||||||||||||||||| |||||| ||||||||||||||    
T  26937635 gtcttagtgcgtcgttggtttgttcgtcgactttgtgcggcgttgtttgtc 26937685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 41996637 - 41996690
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgt 195  Q
    |||| |||||||||||  ||||| ||| ||||||||||||||||||||||||||    
T  41996637 ttattttgtgatttcatcgtcttcgtgcgacgttggtttgttcgtcgtctttgt 41996690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 210
Target Start/End: Complemental strand, 11298761 - 11298714
Alignment:
Q  163 ttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||||| ||||||| |||||| ||||||||||| ||||||||||||||    
T  11298761 ttagtgcgacgttgttttgtttgtcgtctttgtgcggcgttgtttgtc 11298714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 12248731 - 12248668
Alignment:
Q  147 ttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||||||   ||||||||| ||| ||| |||||||||||||||||| || |||||||||||    
T  12248731 ttgtgatttcgtcgtcttagtgcgaccttgttttgttcgtcgtctttgtgcgacgttgtttgtc 12248668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 195
Target Start/End: Original strand, 17019228 - 17019263
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgt 195  Q
    ||||||||| ||||||||||||||||||||||||||    
T  17019228 gtcttagtgcgacgttggtttgttcgtcgtctttgt 17019263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 195
Target Start/End: Original strand, 17549665 - 17549700
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgt 195  Q
    ||||||||| ||||||||||||||||||||||||||    
T  17549665 gtcttagtgcgacgttggtttgttcgtcgtctttgt 17549700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 32412882 - 32412949
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    |||||||||||||||   ||||| ||| ||||||||||||||| |||||||||| ||  |||||||||    
T  32412882 ttatcttgtgatttcgtcgtcttcgtgcgacgttggtttgttcatcgtctttgtgcgatgttgtttgt 32412949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 5917746 - 5917696
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||||| |||||||  ||||||||||||||||| || |||||||||||    
T  5917746 gtcttagtgcgacgttgtgttgttcgtcgtctttgtgcgacgttgtttgtc 5917696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 9992762 - 9992812
Alignment:
Q  145 tcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgt 195  Q
    ||||||||||||   ||||| ||| ||||||||||||||||||||||||||    
T  9992762 tcttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgt 9992812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 12244219 - 12244169
Alignment:
Q  161 tcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtcg 211  Q
    |||||||| ||||||| ||||||||||  |||||| |||||||||||||||    
T  12244219 tcttagtgcgacgttgttttgttcgtcaactttgtgcggcgttgtttgtcg 12244169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 14327589 - 14327639
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||||| ||||||| |||||| ||||||||||| || |||||||||||    
T  14327589 gtcttagtgcgacgttgttttgtttgtcgtctttgtgcgacgttgtttgtc 14327639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 16808986 - 16809036
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||| |||| |||||||| |||||||| |||||||| ||||||||||||||    
T  16808986 gtctaagtgggacgttgggttgttcgtggtctttgtgcggcgttgtttgtc 16809036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 7281149 - 7281096
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgt 195  Q
    |||| |||||||||| | ||| ||||| ||| ||||||||||||||||||||||    
T  7281149 ttattttgtgatttcgccgtcatagtgcgacattggtttgttcgtcgtctttgt 7281096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Complemental strand, 27534416 - 27534367
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    ||||||||| ||| ||| |||||| ||||||||||| |||||||||||||    
T  27534416 gtcttagtgcgacattgttttgtttgtcgtctttgtgcggcgttgtttgt 27534367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 32256736 - 32256675
Alignment:
Q  149 gtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||||||| | ||||||||| || |||| |||||| ||||||||||| || |||||||||||    
T  32256736 gtgatttcgccgtcttagtgcgatgttgttttgtttgtcgtctttgtgcgacgttgtttgtc 32256675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 1215356 - 1215296
Alignment:
Q  147 ttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgttt 207  Q
    ||||||||||   ||||||||||||||||| |||||| ||| ||||||| || ||||||||    
T  1215356 ttgtgatttcgtcgtcttagtgtgacgttgttttgtttgtcatctttgtgcgacgttgttt 1215296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 210
Target Start/End: Original strand, 5457163 - 5457231
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||| ||||||||||   ||||| ||| |||||||||| |||||||||||| || || |||||||||||    
T  5457163 ttattttgtgatttcgtcgtcttcgtgcgacgttggttagttcgtcgtcttcgtgcgacgttgtttgtc 5457231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 20146220 - 20146170
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||||| ||||||| |||||| ||||||||||||||||||||||||||    
T  20146220 gtcttagtgcgacgttgttttgtttgtcgtctttgtacggcgttgtttgtc 20146170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 29310376 - 29310309
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    |||| ||||||||||   ||||| ||| |||||||||||||||||||||||||| || ||||||||||    
T  29310376 ttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgt 29310309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 31645921 - 31645988
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    |||| ||||||||||   ||||| ||| |||||||||||||||||||||||||| || ||||||||||    
T  31645921 ttattttgtgatttcttcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgt 31645988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 209
Target Start/End: Complemental strand, 6887195 - 6887133
Alignment:
Q  147 ttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    ||||||||||   ||||| ||| |||||||||||||||||||||||||| || ||||||||||    
T  6887195 ttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgt 6887133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 208
Target Start/End: Original strand, 20270811 - 20270872
Alignment:
Q  147 ttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttg 208  Q
    ||||||||||   ||||||||| ||||||| |||||||||||||||||| || |||||||||    
T  20270811 ttgtgatttcgtcgtcttagtgcgacgttgttttgttcgtcgtctttgtgcgacgttgtttg 20270872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 210
Target Start/End: Complemental strand, 24288917 - 24288880
Alignment:
Q  173 gttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||| |||||||||||||||||||||||||||||||||    
T  24288917 gttgatttgttcgtcgtctttgtacggcgttgtttgtc 24288880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 173 - 210
Target Start/End: Original strand, 24373305 - 24373342
Alignment:
Q  173 gttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||| |||||||||||||||||||||||||||||||||    
T  24373305 gttgatttgttcgtcgtctttgtacggcgttgtttgtc 24373342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 206
Target Start/End: Complemental strand, 10924155 - 10924091
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtt 206  Q
    |||| ||||||||||   ||||| ||| |||||||||||||||||||||||||| || |||||||    
T  10924155 ttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtt 10924091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 22397565 - 22397502
Alignment:
Q  147 ttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||||||   ||||||||| ||||||| |||||||||||||||||| || | |||||||||    
T  22397565 ttgtgatttcgtcgtcttagtgcgacgttgttttgttcgtcgtctttgtgcgacattgtttgtc 22397502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 33486586 - 33486523
Alignment:
Q  147 ttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||||||   ||||||||| ||| ||| |||||||||||||||||| || |||||||||||    
T  33486586 ttgtgatttcgtcgtcttagtgcgaccttgttttgttcgtcgtctttgtgcgacgttgtttgtc 33486523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 207
Target Start/End: Original strand, 34866537 - 34866584
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgttt 207  Q
    ||||||||| ||||||  ||||||||||||||||||||||||| ||||    
T  34866537 gtcttagtgcgacgttattttgttcgtcgtctttgtacggcgtagttt 34866584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 195
Target Start/End: Complemental strand, 8812166 - 8812120
Alignment:
Q  149 gtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgt 195  Q
    |||||||| | ||||||||| ||||||| ||||||||||||||||||    
T  8812166 gtgatttcgccgtcttagtgcgacgttgttttgttcgtcgtctttgt 8812120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 41358149 - 41358199
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||||| ||| ||| |||||||||||| ||||| ||||||||||||||    
T  41358149 gtcttagtgcgacattgttttgttcgtcgtgtttgtgcggcgttgtttgtc 41358199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 41988262 - 41988312
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||||| ||||||| |||||| ||||||||||| |||| |||||||||    
T  41988262 gtcttagtgcgacgttgttttgtttgtcgtctttgtgcggctttgtttgtc 41988312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 9034964 - 9034911
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgt 195  Q
    |||| |||||||||||  ||||| ||| ||||||||||||||| ||||||||||    
T  9034964 ttattttgtgatttcatcgtcttcgtgcgacgttggtttgttcctcgtctttgt 9034911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 4726950 - 4726882
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||| ||||||||||   ||||| ||| || ||||||| ||||||||||||||| || |||||||||||    
T  4726950 ttattttgtgatttcgtcgtcttcgtgcgatgttggttagttcgtcgtctttgtgcgacgttgtttgtc 4726882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 149 - 207
Target Start/End: Complemental strand, 30416636 - 30416578
Alignment:
Q  149 gtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgttt 207  Q
    |||||||| ||||||||||| ||||||| |||||||||||||||||| || ||||||||    
T  30416636 gtgatttcgctgtcttagtgcgacgttgttttgttcgtcgtctttgtgcgacgttgttt 30416578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 23067870 - 23067802
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||| ||||||||||   ||||| ||| |||||||||||||||||||||||||| || |||||||||||    
T  23067870 ttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgtc 23067802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 209
Target Start/End: Original strand, 9661945 - 9662012
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    |||| ||||||||||   ||||| ||| |||||||||||||||||||||||||| || ||||||||||    
T  9661945 ttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgt 9662012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 14542534 - 14542467
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    |||| ||||||||||   ||||| ||| |||||||||||||||||||||||||| || ||||||||||    
T  14542534 ttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgt 14542467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 210
Target Start/End: Original strand, 38434696 - 38434759
Alignment:
Q  147 ttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||||||   ||||||||| ||||||| |||||||||||||||||| || |||||||||||    
T  38434696 ttgtgatttcgtcgtcttagtgcgacgttgttttgttcgtcgtctttgtccgacgttgtttgtc 38434759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 4634380 - 4634442
Alignment:
Q  147 ttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    ||||||||||   ||||| ||| |||||||||||||||||||||||||| || ||||||||||    
T  4634380 ttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgt 4634442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 147 - 209
Target Start/End: Original strand, 32189077 - 32189139
Alignment:
Q  147 ttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    ||||||||||   ||||| ||| |||||||||||||||||||||||||| || ||||||||||    
T  32189077 ttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgt 32189139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 46716897 - 46716848
Alignment:
Q  161 tcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||| ||| |||||||||||||||||||||||||| || |||||||||||    
T  46716897 tcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgtc 46716848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 46728937 - 46728876
Alignment:
Q  147 ttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttg 208  Q
    ||||||||||   ||||||||| ||| ||| ||||||||||||||||||||| |||||||||    
T  46728937 ttgtgatttcgtcgtcttagtgcgaccttgttttgttcgtcgtctttgtacgacgttgtttg 46728876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 209
Target Start/End: Complemental strand, 9474533 - 9474494
Alignment:
Q  170 gacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    |||||||||||||||||||||||||| || ||||||||||    
T  9474533 gacgttggtttgttcgtcgtctttgtgcgacgttgtttgt 9474494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 210
Target Start/End: Complemental strand, 33020942 - 33020879
Alignment:
Q  147 ttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||||||||||   |||||||| |||| || |||||| ||||||||||| ||||||||||||||    
T  33020942 ttgtgatttcatcatcttagtgcgacgctgttttgtttgtcgtctttgtgcggcgttgtttgtc 33020879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 44021575 - 44021525
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||||| |||||||||||||||||||||||||||   |||| |||||||||    
T  44021575 gtcttaatgtgacgttggtttgttcgtcgtctttaagcggcattgtttgtc 44021525  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 12519748 - 12519801
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgt 195  Q
    |||| ||||||||||   ||||||||| |||||||||||||||||||| |||||    
T  12519748 ttattttgtgatttcgtcgtcttagtgcgacgttggtttgttcgtcgtatttgt 12519801  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 208
Target Start/End: Complemental strand, 15729998 - 15729937
Alignment:
Q  147 ttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttg 208  Q
    ||||||||||   ||||||||| ||| ||| |||||||||||||||||| || |||||||||    
T  15729998 ttgtgatttcgtcgtcttagtgcgaccttgttttgttcgtcgtctttgtgcgacgttgtttg 15729937  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 163 - 208
Target Start/End: Original strand, 16991985 - 16992030
Alignment:
Q  163 ttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttg 208  Q
    |||||||||||||| |||||| ||||||||||| || |||||||||    
T  16991985 ttagtgtgacgttgttttgtttgtcgtctttgtgcgacgttgtttg 16992030  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 47466015 - 47466064
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    ||||||||| |||| || |||||| |||||||||||||||| ||||||||    
T  47466015 gtcttagtgcgacgatgttttgtttgtcgtctttgtacggcattgtttgt 47466064  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 14346543 - 14346591
Alignment:
Q  162 cttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    ||||||| ||||||| ||||||||||||| |||| || |||||||||||    
T  14346543 cttagtgcgacgttgttttgttcgtcgtcgttgtgcgacgttgtttgtc 14346591  T

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Target: scaffold0722 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 142 - 210
Target Start/End: Complemental strand, 5548 - 5480
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgtc 210  Q
    |||| ||||||||||   ||||| ||| |||||||||||||||||||||||||| || |||||||||||    
T  5548 ttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgtc 5480  T

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Target: scaffold0316 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 209
Target Start/End: Complemental strand, 12225 - 12158
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    |||| ||||||||||   ||||| ||| |||||||||||||||||||||||||| || ||||||||||    
T  12225 ttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgtgcgacgttgtttgt 12158  T

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Target: scaffold0150 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0150
Description:

Target: scaffold0150; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 10333 - 10280
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgt 195  Q
    |||| |||||||||   |||||||||| ||||||||||||||||||||||||||    
T  10333 ttattttgtgatttggttgtcttagtgcgacgttggtttgttcgtcgtctttgt 10280  T

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Target: scaffold0157 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 195
Target Start/End: Complemental strand, 1163 - 1110
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgt 195  Q
    |||| ||||||||||   ||||||||| |||||||||||||||||||| |||||    
T  1163 ttattttgtgatttcgtcgtcttagtgcgacgttggtttgttcgtcgtatttgt 1110  T

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Target: scaffold0024 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 195
Target Start/End: Original strand, 36621 - 36674
Alignment:
Q  142 ttatcttgtgatttcactgtcttagtgtgacgttggtttgttcgtcgtctttgt 195  Q
    |||| ||||||||||   ||||| ||| ||||||||||||||||||||||||||    
T  36621 ttattttgtgatttcgtcgtcttcgtgcgacgttggtttgttcgtcgtctttgt 36674  T

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Target: scaffold0012 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 209
Target Start/End: Original strand, 244746 - 244795
Alignment:
Q  160 gtcttagtgtgacgttggtttgttcgtcgtctttgtacggcgttgtttgt 209  Q
    ||||| ||| ||| |||||||||||||||||||||| || ||||||||||    
T  244746 gtcttcgtgcgaccttggtttgttcgtcgtctttgtgcgacgttgtttgt 244795  T

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