View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17721_high_13 (Length: 414)
Name: NF17721_high_13
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17721_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 386468 - 386270
Alignment:
| Q |
1 |
ttgagaaatcttcaaggtggaactttttccaagttttgattatttgaatacttcgagcgaggatagtagttaccttagatgataatttgtggcttctttg |
100 |
Q |
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| T |
386468 |
ttgagaaatcttcaag-tggaactttttacaagttttgattatttgaatacttcgagcgaggatagtagtaaccttagatgataatttgtggcttctttg |
386370 |
T |
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| Q |
101 |
atacattttgactttcaacgagataatgctctaactagaaatgttgaaagaacacgtatgaaactcatttacaagatatatttttcattcttgcatacta |
200 |
Q |
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| T |
386369 |
atacattttgactttcaacgagataatgctctaactagaaatgttgaaagaacacgtatgaaactcatttacaagatatatttttcattcttgcatacta |
386270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 196 - 399
Target Start/End: Complemental strand, 386245 - 386061
Alignment:
| Q |
196 |
tactatattaaaacaacccacatgtttcatcgatttgtaagttacatacatgtaaacctgtcaactaaaaactcaccagaagggcaatattatgatccca |
295 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
386245 |
tactatattaaaacaacccacatgtttcatcgattt---------------gtaaacctgtcaactaaaaactcaccagaagggcaatattatgatccca |
386161 |
T |
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| Q |
296 |
ctacctttattgtggcataagccattgaaatatagtttacatgggtccgtccaaatttacataatattgttcaaagttggaataattgtgaatataacga |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
386160 |
ctacctttattgtggcataagccattgaaatatagtttacatgg----gtccaaatttacataatattgttcaaagttggaataattgtgaatataacga |
386065 |
T |
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