View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17721_high_14 (Length: 400)

Name: NF17721_high_14
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17721_high_14
NF17721_high_14
[»] chr1 (11 HSPs)
chr1 (205-383)||(50405575-50405752)
chr1 (205-380)||(47122828-47123003)
chr1 (11-143)||(27999026-27999158)
chr1 (58-122)||(48692245-48692309)
chr1 (9-143)||(34850238-34850372)
chr1 (9-141)||(40439364-40439495)
chr1 (9-81)||(40435517-40435589)
chr1 (105-147)||(183338-183380)
chr1 (105-147)||(6367831-6367873)
chr1 (105-147)||(19017746-19017788)
chr1 (105-147)||(24905284-24905326)
[»] chr4 (12 HSPs)
chr4 (205-380)||(54149928-54150103)
chr4 (259-333)||(25312157-25312231)
chr4 (9-71)||(48528665-48528727)
chr4 (105-147)||(35028115-35028157)
chr4 (105-163)||(16006076-16006137)
chr4 (105-147)||(7452072-7452114)
chr4 (101-143)||(8439489-8439531)
chr4 (105-147)||(17356042-17356084)
chr4 (105-147)||(22567037-22567079)
chr4 (105-147)||(33247390-33247432)
chr4 (105-147)||(44967186-44967228)
chr4 (105-147)||(46661183-46661225)
[»] chr3 (6 HSPs)
chr3 (259-333)||(42475189-42475263)
chr3 (23-81)||(21783693-21783751)
chr3 (105-147)||(23458096-23458138)
chr3 (105-147)||(36314415-36314457)
chr3 (105-147)||(48322494-48322536)
chr3 (105-147)||(55052396-55052438)
[»] chr2 (9 HSPs)
chr2 (23-131)||(21370390-21370497)
chr2 (210-335)||(42090034-42090159)
chr2 (105-147)||(6658116-6658158)
chr2 (105-147)||(10712992-10713034)
chr2 (105-147)||(11163171-11163213)
chr2 (105-147)||(15848357-15848399)
chr2 (105-147)||(16099293-16099335)
chr2 (105-147)||(34448064-34448106)
chr2 (105-163)||(39423784-39423846)
[»] chr8 (7 HSPs)
chr8 (9-114)||(20386604-20386708)
chr8 (9-114)||(30711891-30711995)
chr8 (9-114)||(30719668-30719772)
chr8 (101-143)||(8747529-8747571)
chr8 (29-116)||(28339153-28339240)
chr8 (105-147)||(11674932-11674974)
chr8 (105-147)||(36928745-36928787)
[»] chr6 (4 HSPs)
chr6 (9-114)||(680016-680120)
chr6 (38-141)||(12407631-12407733)
chr6 (105-147)||(30804130-30804172)
chr6 (105-147)||(33517803-33517845)
[»] chr5 (5 HSPs)
chr5 (105-163)||(5024116-5024178)
chr5 (105-163)||(32242511-32242573)
chr5 (105-147)||(6757982-6758024)
chr5 (105-147)||(28770986-28771028)
chr5 (105-147)||(38475150-38475192)
[»] scaffold0075 (1 HSPs)
scaffold0075 (105-147)||(14546-14588)
[»] chr7 (2 HSPs)
chr7 (105-147)||(27991977-27992019)
chr7 (105-147)||(32680712-32680754)


Alignment Details
Target: chr1 (Bit Score: 142; Significance: 2e-74; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 205 - 383
Target Start/End: Original strand, 50405575 - 50405752
Alignment:
Q  205 ttttgtttattgtacattggcagttaaaaaactcatttccttccttcttttccctcagatctatatcgttttcttccttctctccctcttgaacaaccca 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  50405575 ttttgtttattgtacattggcagttaaaaaactcatttccttccttctttgccctcagatctatatcgttttcttccttctctccctcttgaacaaccca 50405674  T
Q  305 tttcagtttctattctctgtctcggcatttctgaatttgttaaacannnnnnnncttgttttcttcgcatcaagcagct 383  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||        |||||||||||||||||||||||||    
T  50405675 tttcagtttctattctctgtctcagcatttctgaatttgttaaaca-tttttttcttgttttcttcgcatcaagcagct 50405752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 205 - 380
Target Start/End: Original strand, 47122828 - 47123003
Alignment:
Q  205 ttttgtttattgtacattggcagttaaaaaactcatttccttccttcttttccctcagatctatatcgttttcttccttctctccctcttgaacaaccca 304  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  47122828 ttttgtttactgtacattggcagttaaaaaactcatttccttccttctttgccctcagatctatatcgttttcttccttctctccctcttgaacaaccca 47122927  T
Q  305 tttcagtttctattctctgtctcggcatttctgaatttgttaaacannnnnnnncttgttttcttcgcatcaagca 380  Q
    |||||||||||||||||||||||  |||||||||||||||||||||        ||||||||||| ||||||||||    
T  47122928 tttcagtttctattctctgtctcaacatttctgaatttgttaaacattttttttcttgttttctttgcatcaagca 47123003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 27999026 - 27999158
Alignment:
Q  11 gatgaagatgcaagggtcaatgtgtcatttcacgtttggctaagaccctcaggggtattttcgtcttttcatgtccaaaa-ttgttaagtcacactgcca 109  Q
    |||||||||  |||||| || |||||||||||||||||||||||||||| ||||||||||| |||| |||| | |||||| ||||| |||||||||||||    
T  27999026 gatgaagatttaagggtaaacgtgtcatttcacgtttggctaagacccttaggggtatttttgtctgttca-gaccaaaatttgttgagtcacactgcca 27999124  T
Q  110 cgtcaacaaattaatgacgtggcggtgattaagt 143  Q
    | ||| ||||||| ||| ||||| ||||||||||    
T  27999125 catcagcaaattagtgaggtggcagtgattaagt 27999158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 58 - 122
Target Start/End: Original strand, 48692245 - 48692309
Alignment:
Q  58 ctcaggggtattttcgtcttttcatgtccaaaattgttaagtcacactgccacgtcaacaaatta 122  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||  ||| |||||||    
T  48692245 ctcaggggtattttcgtctgttcatgtccaaaattgttaagtcacactgccatatcatcaaatta 48692309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 9 - 143
Target Start/End: Original strand, 34850238 - 34850372
Alignment:
Q  9 gagatgaagatgcaagggtcaatgtgtcatttcacgtttggctaagaccctcaggggtattttcgtcttttcatgtccaaaattgttaagtcacactgcc 108  Q
    |||||||| ||  |||||| ||||||||||||  ||||||||||||||||||||||||||||| |||  |||| | | ||  ||||| ||| | ||||||    
T  34850238 gagatgaatatataagggtaaatgtgtcattttgcgtttggctaagaccctcaggggtatttttgtcggttcaagccaaattttgttgagttagactgcc 34850337  T
Q  109 acgtcaacaaattaatgacgtggcggtgattaagt 143  Q
    |||||| | ||| | ||||||||| ||||||||||    
T  34850338 acgtcagctaatcagtgacgtggcagtgattaagt 34850372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 9 - 141
Target Start/End: Original strand, 40439364 - 40439495
Alignment:
Q  9 gagatgaagatgcaagggtcaatgtgtcatttcacgtttggctaagaccctcaggggtattttcgtcttttcatgtccaaaat-tgttaagtcacactgc 107  Q
    |||||||||||  |||||| ||||| ||||||  | |||||||||||||||||||||||||||||||| |||| | ||||||| ||||||||||  ||||    
T  40439364 gagatgaagatt-aagggtaaatgtttcattttgcatttggctaagaccctcaggggtattttcgtctgttcaag-ccaaaatctgttaagtcaggctgc 40439461  T
Q  108 cacgtcaacaaattaatgacgtggcggtgattaa 141  Q
    || |||| | ||| | ||||||| |||| |||||    
T  40439462 catgtcagctaatcagtgacgtgtcggtaattaa 40439495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 9 - 81
Target Start/End: Complemental strand, 40435589 - 40435517
Alignment:
Q  9 gagatgaagatgcaagggtcaatgtgtcatttcacgtttggctaagaccctcaggggtattttcgtcttttca 81  Q
    |||||||||||  |||||| ||||||||||||  ||||||||||||| | | |||||||||||||||| ||||    
T  40435589 gagatgaagatcaaagggtaaatgtgtcattttgcgtttggctaagatctttaggggtattttcgtctgttca 40435517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 183380 - 183338
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  183380 tgccacgtcatcaaattagtgacgtggcagtgattaagttggt 183338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 6367831 - 6367873
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  6367831 tgccacgtcatcaaattagtgacgtggcagtgattaagttggt 6367873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 19017788 - 19017746
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  19017788 tgccacgtcatcaaattagtgacgtggcagtgattaagttggt 19017746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 24905326 - 24905284
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  24905326 tgccacgtcatcaaattagtgacgtggcagtgattaagttggt 24905284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 205 - 380
Target Start/End: Original strand, 54149928 - 54150103
Alignment:
Q  205 ttttgtttattgtacattggcagttaaaaaactcatttccttccttcttttccctcagatctatatcgttttcttccttctctccctcttgaacaaccca 304  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  54149928 ttttgtttactgtacattggcagttaaaaaactcatttccttccttctttgccctcagatctatatcgttttcttccttctctccctcttgaacaaccca 54150027  T
Q  305 tttcagtttctattctctgtctcggcatttctgaatttgttaaacannnnnnnncttgttttcttcgcatcaagca 380  Q
    |||||||||||||||||||||||  |||||||||||||||||||||        ||||||||||| ||||||||||    
T  54150028 tttcagtttctattctctgtctcaacatttctgaatttgttaaacattttttttcttgttttctttgcatcaagca 54150103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 259 - 333
Target Start/End: Original strand, 25312157 - 25312231
Alignment:
Q  259 tcagatctatatcgttttcttccttctctccctcttgaacaacccatttcagtttctattctctgtctcggcatt 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||    
T  25312157 tcagatctatatcgttttcttccttctctccctcttgaacaacccatttaagtttctattcactgtctcagcatt 25312231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 71
Target Start/End: Complemental strand, 48528727 - 48528665
Alignment:
Q  9 gagatgaagatgcaagggtcaatgtgtcatttcacgtttggctaagaccctcaggggtatttt 71  Q
    |||||||||||  |||||| ||||||||||||  |||||||||||||||||||||||||||||    
T  48528727 gagatgaagatataagggtaaatgtgtcattttgcgtttggctaagaccctcaggggtatttt 48528665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 35028157 - 35028115
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||||||||||||||||||    
T  35028157 tgccacgtcatcaaattagtgacgtggcggtgattaagttggt 35028115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 16006076 - 16006137
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt---ggacaaaattttaaat 163  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||   |||| |||||||||||    
T  16006076 tgccacgtcatcaaattagtgacgtggcagtgattaagttggtaaaggactaaattttaaat 16006137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 7452072 - 7452114
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  7452072 tgccacgtcatcaaattagtgacgtggcagtgattaagttggt 7452114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 8439489 - 8439531
Alignment:
Q  101 acactgccacgtcaacaaattaatgacgtggcggtgattaagt 143  Q
    |||||| ||||||| ||||||| ||||||||||||||||||||    
T  8439489 acactgtcacgtcatcaaattactgacgtggcggtgattaagt 8439531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 17356084 - 17356042
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  17356084 tgccacgtcatcaaattagtgacgtggcagtgattaagttggt 17356042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 22567037 - 22567079
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  22567037 tgccacgtcatcaaattattgacgtggcagtgattaagttggt 22567079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 33247432 - 33247390
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  33247432 tgccacgtcatcaaattagtgacgtggcagtgattaagttggt 33247390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 44967228 - 44967186
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  44967228 tgccacgtcatcaaattagtgacgtggcagtgattaagttggt 44967186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 46661183 - 46661225
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  46661183 tgccacgtcatcaaattagtgacgtggcagtgattaagttggt 46661225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 259 - 333
Target Start/End: Original strand, 42475189 - 42475263
Alignment:
Q  259 tcagatctatatcgttttcttccttctctccctcttgaacaacccatttcagtttctattctctgtctcggcatt 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||    
T  42475189 tcagatctatatcgttttcttccttctctccctcttgaacaacccatttaagtttctattcactgtctcagcatt 42475263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 21783693 - 21783751
Alignment:
Q  23 agggtcaatgtgtcatttcacgtttggctaagaccctcaggggtattttcgtcttttca 81  Q
    ||||| ||||||||||||  ||||||||||||| | |||||||||||||||||| ||||    
T  21783693 agggtaaatgtgtcattttgcgtttggctaagatcttcaggggtattttcgtctgttca 21783751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 23458138 - 23458096
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  23458138 tgccacgtcatcaaattagtgacgtggcagtgattaagttggt 23458096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 36314457 - 36314415
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  36314457 tgccacgtcatcaaattagtgacgtggcagtgattaagttggt 36314415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 48322536 - 48322494
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  48322536 tgccacgtcatcaaattagtgacgtggcagtgattaagttggt 48322494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 55052438 - 55052396
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  55052438 tgccacgtcatcaaattagtgacgtggcagtgattaagttggt 55052396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 23 - 131
Target Start/End: Original strand, 21370390 - 21370497
Alignment:
Q  23 agggtcaatgtgtcatttcacgtttggctaagaccctcaggggtattttcgtcttttcatgtccaaaattgttaagtcacactgccacgtcaacaaatta 122  Q
    ||||| |||||| ||||||||||||| |||||||||| |||| ||||||||||| |||||||||||||||||| ||||||||| |||||||| | ||| |    
T  21370390 agggtaaatgtgccatttcacgtttgactaagaccctgaggg-tattttcgtctgttcatgtccaaaattgttgagtcacactaccacgtcagctaatca 21370488  T
Q  123 atgacgtgg 131  Q
     ||||||||    
T  21370489 gtgacgtgg 21370497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 210 - 335
Target Start/End: Complemental strand, 42090159 - 42090034
Alignment:
Q  210 tttattgtacattggcagttaaaaaactcatttccttccttcttttccctcagatctatatcg-ttttcttccttctctccctcttgaacaacccatttc 308  Q
    |||| |||| ||||||||||||||| ||||||| ||| ||| ||| |||||||||| || ||| |||| |||||| || |||||||  ||| | ||||||    
T  42090159 tttactgtagattggcagttaaaaagctcatttactttcttttttgccctcagatcgatctcgtttttattccttttc-ccctctttgacatcgcatttc 42090061  T
Q  309 agtttctattctctgtctcggcatttc 335  Q
    ||||| |||||||| |||| |||||||    
T  42090060 agtttttattctctatctcagcatttc 42090034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 6658116 - 6658158
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  6658116 tgccacgtcatcaaattagtgacgtggcagtgattaagttggt 6658158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 10712992 - 10713034
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  10712992 tgccacgtcatcaaattagtgacgtggcagtgattaagttggt 10713034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 11163213 - 11163171
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  11163213 tgccacgtcatcaaattagtgacgtggcagtgattaagttggt 11163171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 15848357 - 15848399
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  15848357 tgccacgtcatcaaattagtgacgtggcagtgattaagttggt 15848399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 16099293 - 16099335
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  16099293 tgccacgtcatcaaattagtgacgtggcagtgattaagttggt 16099335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 34448064 - 34448106
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  34448064 tgccacgtcatcaaattagtgacgtggcagtgattaagttggt 34448106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 39423784 - 39423846
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt----ggacaaaattttaaat 163  Q
    |||||||||| | ||||| ||||||||| ||||||||||||||    ||||||||||||||||    
T  39423784 tgccacgtcatcgaattagtgacgtggcagtgattaagttggtcaaaggacaaaattttaaat 39423846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 20386604 - 20386708
Alignment:
Q  9 gagatgaagatgcaagggtcaatgtgtcatttcacgtttggctaagaccctcaggggtattttcgtcttttcatgtccaaaat-tgttaagtcacactgc 107  Q
    |||||||||||| |||||| || |||||||||  ||||||||||||  |||||||||||||||||||| |||| | ||||||| |||| ||||| |||||    
T  20386604 gagatgaagatgtaagggtaaaggtgtcattttgcgtttggctaag-gcctcaggggtattttcgtctgttcaag-ccaaaatatgttgagtcagactgc 20386701  T
Q  108 cacgtca 114  Q
    |||||||    
T  20386702 cacgtca 20386708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 30711891 - 30711995
Alignment:
Q  9 gagatgaagatgcaagggtcaatgtgtcatttcacgtttggctaagaccctcaggggtattttcgtcttttcatgtccaaaat-tgttaagtcacactgc 107  Q
    |||||||||||| |||||| || |||||||||  ||||||||||||  |||||||||||||||||||| |||| | ||||||| |||| ||||| |||||    
T  30711891 gagatgaagatgtaagggtaaaggtgtcattttgcgtttggctaag-gcctcaggggtattttcgtctgttcaag-ccaaaatatgttgagtcagactgc 30711988  T
Q  108 cacgtca 114  Q
    |||||||    
T  30711989 cacgtca 30711995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 114
Target Start/End: Original strand, 30719668 - 30719772
Alignment:
Q  9 gagatgaagatgcaagggtcaatgtgtcatttcacgtttggctaagaccctcaggggtattttcgtcttttcatgtccaaaat-tgttaagtcacactgc 107  Q
    |||||||||||| |||||| || |||||||||  ||||||||||||  |||||||||||||||||||| |||| | ||||||| |||| ||||| |||||    
T  30719668 gagatgaagatgtaagggtaaaggtgtcattttgcgtttggctaag-gcctcaggggtattttcgtctgttcaag-ccaaaatatgttgagtcagactgc 30719765  T
Q  108 cacgtca 114  Q
    |||||||    
T  30719766 cacgtca 30719772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 143
Target Start/End: Original strand, 8747529 - 8747571
Alignment:
Q  101 acactgccacgtcaacaaattaatgacgtggcggtgattaagt 143  Q
    |||||||||||||| ||||||| ||||||||||||||||||||    
T  8747529 acactgccacgtcatcaaattactgacgtggcggtgattaagt 8747571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 29 - 116
Target Start/End: Original strand, 28339153 - 28339240
Alignment:
Q  29 aatgtgtcatttcacgtttggctaagaccctcaggggtattttcgtcttttcatgtccaaaattgttaagtcacactgccacgtcaac 116  Q
    ||||| ||||||  ||||||||| ||||| ||| |||||||||||||| |||| | | ||| ||||| ||||| |||||||| |||||    
T  28339153 aatgtttcattttgcgtttggctgagaccttcacgggtattttcgtctgttcacgccaaaatttgttgagtcagactgccacttcaac 28339240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 11674932 - 11674974
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  11674932 tgccacgtcatcaaattagtgacgtggcagtgattaagttggt 11674974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 36928745 - 36928787
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  36928745 tgccacgtcatcaaattagtgacgtggcagtgattaagttggt 36928787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 114
Target Start/End: Complemental strand, 680120 - 680016
Alignment:
Q  9 gagatgaagatgcaagggtcaatgtgtcatttcacgtttggctaagaccctcaggggtattttcgtcttttcatgtccaaaat-tgttaagtcacactgc 107  Q
    |||||||||||| |||||| ||||||||||||  ||||||||||||  |||||||||||||||||| | |||| | ||||||| |||| ||||| |||||    
T  680120 gagatgaagatgtaagggtaaatgtgtcattttgcgtttggctaag-gcctcaggggtattttcgtttgttcaag-ccaaaatatgttgagtcagactgc 680023  T
Q  108 cacgtca 114  Q
    |||||||    
T  680022 cacgtca 680016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 141
Target Start/End: Complemental strand, 12407733 - 12407631
Alignment:
Q  38 tttcacgtttggctaagaccctcaggggtattttcgtcttttcatgtccaaaattgttaagtcacactgccacgtcaacaaattaatgacgtggcggtga 137  Q
    ||||| |||||||||||||| | |||| |||||| |||| |||||||||| ||||||| |||| ||||||||||| | | ||||| ||||||||| || |    
T  12407733 tttcatgtttggctaagacctttaggg-tatttttgtctgttcatgtccataattgttgagtcccactgccacgtgagctaattagtgacgtggcagtaa 12407635  T
Q  138 ttaa 141  Q
    ||||    
T  12407634 ttaa 12407631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 30804130 - 30804172
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  30804130 tgccacgtcatcaaattagtgacgtggcagtgattaagttggt 30804172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 33517803 - 33517845
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  33517803 tgccacgtcatcaaattagtgacgtggcagtgattaagttggt 33517845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 163
Target Start/End: Complemental strand, 5024178 - 5024116
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt----ggacaaaattttaaat 163  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    ||||||||||||||||    
T  5024178 tgccacgtcatcaaattagtgacgtggcagtgattaagttggtcaaaggacaaaattttaaat 5024116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 105 - 163
Target Start/End: Original strand, 32242511 - 32242573
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt----ggacaaaattttaaat 163  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    ||||||||||||||||    
T  32242511 tgccacgtcatcaaattagtgacgtggcagtgattaagttggtcaaaggacaaaattttaaat 32242573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 6758024 - 6757982
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  6758024 tgccacgtcatcaaattagtgacgtggcagtgattaagttggt 6757982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 28771028 - 28770986
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  28771028 tgccacgtcatcaaattagtgacgtggcagtgattaagttggt 28770986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 38475192 - 38475150
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  38475192 tgccacgtcatcaaattagtgacgtggcagtgattaagttggt 38475150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0075 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0075
Description:

Target: scaffold0075; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 14588 - 14546
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  14588 tgccacgtcatcaaattagtgacgtggcagtgattaagttggt 14546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Original strand, 27991977 - 27992019
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  27991977 tgccacgtcatcaaattagtgacgtggcagtgattaagttggt 27992019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 32680754 - 32680712
Alignment:
Q  105 tgccacgtcaacaaattaatgacgtggcggtgattaagttggt 147  Q
    |||||||||| ||||||| ||||||||| ||||||||||||||    
T  32680754 tgccacgtcatcaaattagtgacgtggcagtgattaagttggt 32680712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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