View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17721_high_16 (Length: 389)

Name: NF17721_high_16
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17721_high_16
NF17721_high_16
[»] chr5 (1 HSPs)
chr5 (9-372)||(39779965-39780327)
[»] chr7 (2 HSPs)
chr7 (300-368)||(10881932-10882000)
chr7 (334-370)||(10879885-10879921)
[»] chr6 (1 HSPs)
chr6 (274-357)||(2481864-2481950)
[»] chr4 (2 HSPs)
chr4 (274-357)||(12632167-12632253)
chr4 (274-357)||(27107874-27107960)
[»] chr1 (2 HSPs)
chr1 (274-357)||(44680487-44680573)
chr1 (274-357)||(23271727-23271813)
[»] chr2 (1 HSPs)
chr2 (291-368)||(13510510-13510587)


Alignment Details
Target: chr5 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 9 - 372
Target Start/End: Complemental strand, 39780327 - 39779965
Alignment:
Q  9 gatatgaacaagatttgtggctactctaataagagcataaattgtctctgacttgtcttctaatgaactctataaatgagttgaataggcaacataaatg 108  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39780327 gatatgaacaagatttgtg-ctactctaataagagcataaattgtctctgacttgtcttctaatgaactctatacatgagttgaataggcaacataaatg 39780229  T
Q  109 gttgtaatttcttaaggattttgactaatttaagctttgttatcacctgggaaaggctaatttactagttgattaagtaggaattctttgagtgcatctt 208  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39780228 gttataatttcttaaggattttgactaatttaagctttgttatcaccttggaaaggctaatttactagttgattaagtaggaattctttgagtgcatctt 39780129  T
Q  209 ctgtggttgtgaaacaccgcaaattgttagaacaatgtagagatcttagagatgattatgaacatattttcttattgaaagaagggcttttagttagaca 308  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39780128 ctgtgattgtgaaacaccgcaaattgttagaacaatgtagagatcttagagatgattatgaacatattttcttattgaaagaagggcttttagttagaca 39780029  T
Q  309 aataatgtgtgtcataaaactagacaaaaatgtgaagtatggttatctttcatttattgagatg 372  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39780028 aataatgtgtgtcataaaactagacaaaaatgtgaagtatggttatctttcatttattgagatg 39779965  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 300 - 368
Target Start/End: Complemental strand, 10882000 - 10881932
Alignment:
Q  300 agttagacaaataatgtgtgtcataaaactagacaaaaatgtgaagtatggttatctttcatttattga 368  Q
    |||| ||||||||||| || ||||||||||||| ||||| |||||| |||||||||||  |||||||||    
T  10882000 agtttgacaaataatgcgtatcataaaactagagaaaaaagtgaagcatggttatcttctatttattga 10881932  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 334 - 370
Target Start/End: Original strand, 10879885 - 10879921
Alignment:
Q  334 aaaaatgtgaagtatggttatctttcatttattgaga 370  Q
    |||||||||||||||||||||||| ||||||||||||    
T  10879885 aaaaatgtgaagtatggttatcttccatttattgaga 10879921  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 357
Target Start/End: Original strand, 2481864 - 2481950
Alignment:
Q  274 attttcttattgaaagaagg---gcttttagttagacaaataatgtgtgtcataaaactagacaaaaatgtgaagtatggttatctt 357  Q
    ||||||||||| ||||||||   |||||  ||||||||||||||| | || ||| ||||||| |||||||||||| |||||||||||    
T  2481864 attttcttattaaaagaaggtgggctttcggttagacaaataatgcgggttatagaactagagaaaaatgtgaagcatggttatctt 2481950  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 357
Target Start/End: Complemental strand, 12632253 - 12632167
Alignment:
Q  274 attttcttattgaaagaagg---gcttttagttagacaaataatgtgtgtcataaaactagacaaaaatgtgaagtatggttatctt 357  Q
    ||||||||||| ||||||||   |||||  ||||||||||||||| | || ||| ||||||| |||||||||||| |||||||||||    
T  12632253 attttcttattaaaagaaggtgggctttcggttagacaaataatgcgggttatagaactagagaaaaatgtgaagcatggttatctt 12632167  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 357
Target Start/End: Complemental strand, 27107960 - 27107874
Alignment:
Q  274 attttcttattgaaagaagg---gcttttagttagacaaataatgtgtgtcataaaactagacaaaaatgtgaagtatggttatctt 357  Q
    ||||||||||| ||||||||   |||||  ||||||||||||||| | || ||| ||||||| |||||||||||| |||||||||||    
T  27107960 attttcttattaaaagaaggtgggctttcggttagacaaataatgcgggttatagaactagagaaaaatgtgaagcatggttatctt 27107874  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 274 - 357
Target Start/End: Complemental strand, 44680573 - 44680487
Alignment:
Q  274 attttcttattgaaagaagg---gcttttagttagacaaataatgtgtgtcataaaactagacaaaaatgtgaagtatggttatctt 357  Q
    ||||||||||| ||||||||   |||||  ||||||||||||||| | || ||| ||||||| |||||||||||| |||||||||||    
T  44680573 attttcttattaaaagaaggtgggctttcggttagacaaataatgcgggttatagaactagagaaaaatgtgaagcatggttatctt 44680487  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 274 - 357
Target Start/End: Complemental strand, 23271813 - 23271727
Alignment:
Q  274 attttcttattgaaagaagg---gcttttagttagacaaataatgtgtgtcataaaactagacaaaaatgtgaagtatggttatctt 357  Q
    ||||||||||| ||||||||   |||||  |||||||||||||||   || ||| ||||||| |||||||||||| ||| |||||||    
T  23271813 attttcttattaaaagaaggtgggctttcggttagacaaataatgccggttatagaactagagaaaaatgtgaagcatgattatctt 23271727  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 291 - 368
Target Start/End: Original strand, 13510510 - 13510587
Alignment:
Q  291 agggcttttagttagacaaataatgtgtgtcataaaactagacaaaaatgtgaagtatggttatctttcatttattga 368  Q
    |||||||| |||||||||| | |||  ||||||| ||||||| |||||||||||| |||  ||||||  |||||||||    
T  13510510 agggctttcagttagacaattgatgcatgtcatagaactagagaaaaatgtgaagcatgtgtatcttcgatttattga 13510587  T

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