View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17721_high_18 (Length: 380)
Name: NF17721_high_18
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17721_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 39 - 377
Target Start/End: Original strand, 49921440 - 49921778
Alignment:
| Q |
39 |
cagctacagggtagctaaacagcatctattgtcgaacgaactgaactcgaagtgcatcatcatgcagaagaggcaagataccatcaggtggttctacaaa |
138 |
Q |
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| T |
49921440 |
cagctacagggtagctaaacagcttctattgccgagcgaactgaactcgaagtgcatcatcctgcagcagaggcaagataccatcaggtggttctacaaa |
49921539 |
T |
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| Q |
139 |
ctcctgccaagcttcgttatagttcgcgcccatcttcgccatgaaatcagtcgtggcattcgcctcccgccacgtatgactcagttgtaaatgccaatcg |
238 |
Q |
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| T |
49921540 |
ctcctgccaagcttcgttacagttcgcgcccatcttcgccatgaaatcagctgtggcattcgcctcccgccacgtatgactcagttgtaaatgccaatcg |
49921639 |
T |
|
| Q |
239 |
tgagtcatcaggtcctttatattgctgataatgggtgcaaaaaggtgccaaggattcaccgttgtgttaaccagttgaatggccaacgtggagtcggagt |
338 |
Q |
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| T |
49921640 |
cgagccatcaggtcctttatattgctgataatgggtgcaaaaaggtgtcaaggattcaccattgtgttaaccagttgaatggccaacgtggagtcggagt |
49921739 |
T |
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| Q |
339 |
aacaaacaagatgcatatgcccccgatcccacgcaactc |
377 |
Q |
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| T |
49921740 |
aacaaacaagatgcctatgcccctgatcctacgcaactc |
49921778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 167 - 378
Target Start/End: Complemental strand, 13799889 - 13799678
Alignment:
| Q |
167 |
cccatcttcgccatgaaatcagtcgtggcattcgcctcccgccacgtatgactcagttgtaaatgccaatcgtgagtcatcaggtcctttatattgctga |
266 |
Q |
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| T |
13799889 |
cccatcttcaccatgaaatcagctgtagcatttgcctcccaccacgtatgactcagttggaaattccagtcgcgagccattagatccttgatattgctga |
13799790 |
T |
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| Q |
267 |
taatgggtgcaaaaaggtgccaaggattcaccgttgtgttaaccagttgaatggccaacgtggagtcggagtaacaaacaagatgcatatgcccccgatc |
366 |
Q |
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||| |||||||| |||||||||| ||||||| ||||||||| ||||| |||||| || ||||| ||| |||||| ||||||| ||| || | ||| |
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| T |
13799789 |
taacaggtgcaaagaggtgccaagaattcacctccatgttaaccaattgaaaggccaaagttgagtctgagaaacaaataagatgcctatacctctaatc |
13799690 |
T |
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| Q |
367 |
ccacgcaactcg |
378 |
Q |
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| T |
13799689 |
ccacgcaactcg |
13799678 |
T |
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