View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17721_high_22 (Length: 325)
Name: NF17721_high_22
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17721_high_22 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 39952252 - 39952548
Alignment:
| Q |
18 |
agatgaatcagaaaacatgctatgggagaatattttgctgatggtcatacaatttcatccactaagaaagcannnnnnnnnnnnnnnnnnnnnnnnncca |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||| |
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| T |
39952252 |
agatgaatcagaaaacatgctatgggagaatattttgctgatggtcatataatttcatccactaagaaagcatttttcgttttattttgctctttttcca |
39952351 |
T |
|
| Q |
118 |
tcgaaggatcaagatgtttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctgatta |
217 |
Q |
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| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39952352 |
ttgaaggatcaagatgtttcactataacgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctgatta |
39952451 |
T |
|
| Q |
218 |
ttgtttttgtatatcctttccgcagatgtcaatggatatggtgtgagtagattgaactctggttttgttggtgctctaatttcgctaatcacttcat |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
39952452 |
ttgtttttgtatatcctttccgcagatgtcaatggatatggtgtgagtagattgaactctggttttgttggtgctttaatttcgctaatcacttcat |
39952548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 18 - 232
Target Start/End: Original strand, 30339588 - 30339802
Alignment:
| Q |
18 |
agatgaatcagaaaacatgctatgggagaatattttgctgatggtcatacaatttcatccactaagaaagcannnnnnnnnnnnnnnnnnnnnnnnncca |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
30339588 |
agatgaatcagaaaacatgctatgggagaatattttgctgatggtcatacaatttcatccactaagaaagcatttttcatttgattttgttctttttcca |
30339687 |
T |
|
| Q |
118 |
tcgaaggatcaagatgtttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctgatta |
217 |
Q |
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| ||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| |
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| T |
30339688 |
ttgaaggatcaagttttttcactataatgggtcattgtacttcaagcagatgtttgacaagttataacaggtcagtagtatctcaaactcttgctgatta |
30339787 |
T |
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| Q |
218 |
ttgtttttgtatatc |
232 |
Q |
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||||||||||||||| |
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| T |
30339788 |
ttgtttttgtatatc |
30339802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 115 - 248
Target Start/End: Original strand, 37221990 - 37222123
Alignment:
| Q |
115 |
ccatcgaaggatcaagatgtttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga |
214 |
Q |
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|||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37221990 |
ccattgaaagatcaagatttttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga |
37222089 |
T |
|
| Q |
215 |
ttattgtttttgtatatcctttccgcagatgtca |
248 |
Q |
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| T |
37222090 |
taattgtttttgtatatccttttcgcagatgtca |
37222123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 115 - 236
Target Start/End: Complemental strand, 34230240 - 34230119
Alignment:
| Q |
115 |
ccatcgaaggatcaagatgtttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga |
214 |
Q |
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|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34230240 |
ccattgaaggatcaagatttttcactataatgggtcattgtacttcaagcagatgtttgacaagttataccaggtcagtagtatctcgaactcttgctga |
34230141 |
T |
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| Q |
215 |
ttattgtttttgtatatccttt |
236 |
Q |
| |
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|||||||||||||| ||||||| |
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| T |
34230140 |
ttattgtttttgtacatccttt |
34230119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 34230309 - 34230259
Alignment:
| Q |
18 |
agatgaatcagaaaacatgctatgggagaatattttgctgatggtcataca |
68 |
Q |
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|||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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| T |
34230309 |
agatgaatcagaaaacatactataggagaatattttgctgatggtcataca |
34230259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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