View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17721_high_32 (Length: 254)
Name: NF17721_high_32
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17721_high_32 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 45714035 - 45714283
Alignment:
| Q |
11 |
gaagcataggaaaacccaaatacttttcgagagaagtaatgctttgaataccggatatgttagatgcgtttagaattagggaaatagattctctacat-- |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45714035 |
gaagcataggaaaacccaaatacttttcgagagaagtaatgctttgaataccggatatgtgagatgcgtttagaattagggaaatagattctctacatta |
45714134 |
T |
|
| Q |
109 |
---agaaatctaacaaatcctcaacccttcaaaataaatgatacaaattatttaatattaaaaacaagagggaatacatttaatgatatagattttcaca |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45714135 |
aagagaaatctaacaaatcctcaacccttcaaaataaatgatacaaattatttaatattaaaaacaagagagaatacatttaatgatatagattttcaca |
45714234 |
T |
|
| Q |
206 |
tgtaagtgatatgtgggaatctcgtcccgcgtttattgagcatgttaat |
254 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45714235 |
tgtaagtgatatgtgggaatctcgtcccgcgtttattaagcatgttaat |
45714283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University