View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17721_high_33 (Length: 253)
Name: NF17721_high_33
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17721_high_33 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 39952963 - 39952724
Alignment:
| Q |
14 |
atgaaaaagaataactctgcgaatgnnnnnnnnnnntagttaagttagatgctagctttctcatcaatatatcactaaaataatagacacatccatgtca |
113 |
Q |
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| T |
39952963 |
atgaaaaagaataactctgcgaatgaaaaaaaaaaatagttaagttagatgctagctttcacatcaatatatcactaaaataatagacacatccatgtca |
39952864 |
T |
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| Q |
114 |
cattatcagatatatccaaacttttagtctttcccaaatatgttgcaagctatggtttctgatgttaaccatcaaaacaaagtttatacaatcgatgatt |
213 |
Q |
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| T |
39952863 |
cattatcagatatatccaaacttttagtctttcccaaatatgttgcaagctatggtttctgatgttaaccatcacaacaaagtttatacaatcgatgatt |
39952764 |
T |
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| Q |
214 |
tattctcatttgaattacgtactttttaaaaatttgctct |
253 |
Q |
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| T |
39952763 |
tattctcatttgaattacgtactttttaaaaatttgctct |
39952724 |
T |
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Target: chr3 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 50 - 226
Target Start/End: Original strand, 50416814 - 50416993
Alignment:
| Q |
50 |
tagttaagttagatgctagctttctcatcaatatatcactaaaataata---gacacatccatgtcacattatcagatatatccaaacttttagtctttc |
146 |
Q |
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|||||||||||||||||||||||| |||||||||| ||||||||||||| |||||| ||||||||| ||||||||||||| ||||||||||||||||| |
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| T |
50416814 |
tagttaagttagatgctagctttcacatcaatataacactaaaataataaatgacacagccatgtcacgttatcagatatatgcaaacttttagtctttc |
50416913 |
T |
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| Q |
147 |
ccaaatatgttgcaagctatggtttctgatgttaaccatcaaaacaaagtttatacaatcgatgatttattctcatttga |
226 |
Q |
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| T |
50416914 |
ccagatatgttgaaagcaatggtttctgatgttaaccatcacaacaaagtttatacaatctataatttattctcatttga |
50416993 |
T |
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