View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17721_high_37 (Length: 241)
Name: NF17721_high_37
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17721_high_37 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 6 - 241
Target Start/End: Original strand, 32834008 - 32834243
Alignment:
| Q |
6 |
tctctgaaacgggaaaagatgcctctacagcagaagaaggagcctctacacggggaaaagaatcttccacacaagaaaagtcaccatcggcaccggaaca |
105 |
Q |
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| T |
32834008 |
tctctgaaacgggaaaagatgcctctacagcagaagaaggagcctctacaccgggaaaagaatcttccacacaagaaaagtcaccatcagcaccggaaca |
32834107 |
T |
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| Q |
106 |
aaaaccaccttctgctactggatcagagcccattgccataccttcaaggaaatgtagtgatctccaagacacaccaattcatcatcctaaatcggatgct |
205 |
Q |
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| T |
32834108 |
aaaaccaccttctgctactggatcagagcccattgccataccttcaaggaaatgtagtgatctccaagacacaccaattcatcatcctaaatcggatgct |
32834207 |
T |
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| Q |
206 |
cctttagccagaactcatcgacttccagggtttctc |
241 |
Q |
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| T |
32834208 |
cctttagccagaactcatcgacttccagggtttctc |
32834243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 6 - 241
Target Start/End: Original strand, 32840422 - 32840657
Alignment:
| Q |
6 |
tctctgaaacgggaaaagatgcctctacagcagaagaaggagcctctacacggggaaaagaatcttccacacaagaaaagtcaccatcggcaccggaaca |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32840422 |
tctctgaaacgggaaaagatgcctctacagcagaagaaggtgcctctacaccgggaaaagaatcttccacacaagaaaagtcaccatcggcaccggaaca |
32840521 |
T |
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| Q |
106 |
aaaaccaccttctgctactggatcagagcccattgccataccttcaaggaaatgtagtgatctccaagacacaccaattcatcatcctaaatcggatgct |
205 |
Q |
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| T |
32840522 |
aaaaccaccttctgctactgaatcagagcccattgccataccttcaaggaaatgtagtgatctccaagacacaccaattcatcatcctaaatcagatgct |
32840621 |
T |
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| Q |
206 |
cctttagccagaactcatcgacttccagggtttctc |
241 |
Q |
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| T |
32840622 |
cctttagccagaactcatcgacttccagggtttctc |
32840657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 125 - 241
Target Start/End: Complemental strand, 31682760 - 31682647
Alignment:
| Q |
125 |
ggatcagagcccattgccataccttcaaggaaatgtagtgatctccaagacacaccaattcatcatcctaaatcggatgctcctttagccagaactcatc |
224 |
Q |
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|||||| ||| ||||| |||||||||||||||| |||| |||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||| |
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| T |
31682760 |
ggatcaaagctcattgtcataccttcaaggaaacctagt---ctccaagacacaccaatttatcatcctcaatcggatgctcctttagccggaactcatc |
31682664 |
T |
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| Q |
225 |
gacttccagggtttctc |
241 |
Q |
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| T |
31682663 |
aacttccatcgtttctc |
31682647 |
T |
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