View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17721_high_42 (Length: 210)
Name: NF17721_high_42
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17721_high_42 |
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Alignment Details
Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 86
Target Start/End: Complemental strand, 47456283 - 47456198
Alignment:
| Q |
1 |
tttaaagaaagtggaccctttgatatttttcaaattctaccttcatcttcttcctatcattttcattataatcgttgacattcatc |
86 |
Q |
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| T |
47456283 |
tttaaagaaagtggaccctttgatctttttcaatttctaccttcatcttcttcctatcattttcatcttcatcgttgacattcatc |
47456198 |
T |
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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 6173357 - 6173315
Alignment:
| Q |
1 |
tttaaagaaagtggaccctttgatatttttcaaattctacctt |
43 |
Q |
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| T |
6173357 |
tttaaagaaagtggaccctttgatctatttcaatttctacctt |
6173315 |
T |
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Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 1587395 - 1587460
Alignment:
| Q |
1 |
tttaaagaaagtggaccctttgatatttttcaaattctaccttcatcttcttcctatcattttcat |
66 |
Q |
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| T |
1587395 |
tttaaagaaagtggaccctttgatctttttcaatttctaccttcatcttcttcctatcattttcat |
1587460 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 55; Significance: 8e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 46111392 - 46111310
Alignment:
| Q |
4 |
aaagaaagtggaccctttgatatttttcaaattctaccttcatcttcttcctatcattttcattataatcgttgacattcatc |
86 |
Q |
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|||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||||| | |||| ||||||||||| |
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| T |
46111392 |
aaagaaagtggatcctttgatctttttcaatttctaccttcatcttcttcctatcattttcatcttcatcgctgacattcatc |
46111310 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 4 - 66
Target Start/End: Original strand, 324262 - 324324
Alignment:
| Q |
4 |
aaagaaagtggaccctttgatatttttcaaattctaccttcatcttcttcctatcattttcat |
66 |
Q |
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|||||||| | |||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
324262 |
aaagaaagcgaaccctttgatctttttcaatttctaccttcatcttcttcctatcattttcat |
324324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 30787505 - 30787440
Alignment:
| Q |
1 |
tttaaagaaagtggaccctttgatatttttcaaattctaccttcatcttcttcctatcattttcat |
66 |
Q |
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|
|||||||||||||||||||||||| |||||||| ||||||||||||| ||||||| ||||||||| |
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| T |
30787505 |
tttaaagaaagtggaccctttgatctttttcaatttctaccttcatcatcttcctcacattttcat |
30787440 |
T |
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