View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17721_high_5 (Length: 550)
Name: NF17721_high_5
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17721_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 16 - 526
Target Start/End: Original strand, 10389868 - 10390372
Alignment:
| Q |
16 |
ttaccaacggataatcccgaatcgtacaaaaactccaacctctcctggtgactgcaatcaaatcaaatcaaatcaaagtcagtaaaattttcatgatttc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
10389868 |
ttaccaacggataatcccgaatcgtacaaaaactccaacctctcctggtgactgcaatcaaatcaaatcaaa-----gtcagtaaaattttcatggtttc |
10389962 |
T |
|
| Q |
116 |
aagtgaaaaaccctaaccctnnnnnnntcaattagggttgtttccaataaaaatgaatcaaaattgataactgaattaggggaagagtaattacggaacg |
215 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10389963 |
aagtgaaaaaccataaccctaaaaaa-tcaattagggttgtttccaataaaaatgaatcaaaattgataactgaattaggggaagagtaattacggaacg |
10390061 |
T |
|
| Q |
216 |
aggccagctttttcctgaagaagacgaaactcgctacgttcacgttcttcttgaatctgtttacgaagttcatcgagttttttctcttcggcgctgtgct |
315 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10390062 |
aggccagccttttcctgaagaagacgaaactcgctacgttcacgttcttcttgaatctgtttacgaagttcatcgagttttttctcttcggcgctgtgct |
10390161 |
T |
|
| Q |
316 |
tttgttcggctttccaaacattttcaatgttccgaagacttcccgtgtgccaacccttcttgttcaaaaatttcatacccattttgacgaatgatttggt |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10390162 |
tttgttcggctttccaaacattttcaatgttccgaagacttcccgtgtgccaacccttcttgttcaaaaatttcatacccattttgacgaatgatttggt |
10390261 |
T |
|
| Q |
416 |
tttgatcgattgattttggtttcagcaatgtnnnnnnnnnnnnnnnnnngtagcttacaacttgagaagaaatacagagaacgaagaaaggatatgcaac |
515 |
Q |
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||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10390262 |
ttttatcgattgattttggtttcagcaatgtttcttcttcttcttcttcgtagcttacaacttgagaagaaatacagagaacgaagaaaggatatgcaac |
10390361 |
T |
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| Q |
516 |
taaaaatcgcg |
526 |
Q |
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||||||||||| |
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| T |
10390362 |
taaaaatcgcg |
10390372 |
T |
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