View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17721_high_9 (Length: 506)
Name: NF17721_high_9
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17721_high_9 |
 | |
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| [»] scaffold0004 (1 HSPs) |
| | |
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Alignment Details
Target: chr7 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Complemental strand, 42300407 - 42299917
Alignment:
| Q |
1 |
ctttaggtttaggatacatatgagccttaatttgtcatactgctttggtttcttggaccatgtcagtacttgccgaggcaatccttagtcctttttggtc |
100 |
Q |
| |
|
||||| ||||||||| | ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
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|
| T |
42300407 |
ctttaagtttaggatccttatgagccttaatctgtcatactgcattggtttcttggaccatgtcagtacttgctgaggcaatccttagttctttttggtc |
42300308 |
T |
|
| Q |
101 |
tttaaaagttaaaacttattaaaccattatatttta-atacatgtactgttagctaggtcatttatggtcatgcttgtggttgtgctaacatacatcatg |
199 |
Q |
| |
|
|||||||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
42300307 |
tttaaaagttaaaacttattaaaccacc---tttcacatacatgtactgttagctaggtcatttatggtcatgcttgtggttgtgctaacatatatcatg |
42300211 |
T |
|
| Q |
200 |
cttgcatatcaaaccattatatttacatatctaaagtttggtatttggtgcagaaaa-ttcaggtttacacgtctttgacttcttggccaattcaatcct |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||| ||||||||||||||||||||||||||||| |
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|
| T |
42300210 |
cttgcatatcaaaccattatatttacatatctaaagtttggtatttggtgcggaaaaattcagatttacatgtctttgacttcttggccaattcaatcct |
42300111 |
T |
|
| Q |
299 |
tagagaggttctctttactgttcagaagggaaaactaggagcattttctcctcgaagaccagagttcttgaaaaattacaaatcaagcttggagttcttg |
398 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
42300110 |
tagagaggttctctttactattcagaagggaaaaccaggtgcattttctcctggaagaccagagttcttgaaaaattacaaatcaagcttggaattcttg |
42300011 |
T |
|
| Q |
399 |
gcttatctagaaggtagtagtcatatctcctttcagctaatctcaccttttcaccttgagaaacagaaataaagaagaaaatgtggccttaatg |
492 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||| |
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|
| T |
42300010 |
gcttatctagaaggtagtagtcatatctcctttcagctaatctcaccttttcaccttgagaaatataaataaagaagaaaatgtggccttaatg |
42299917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 492
Target Start/End: Complemental strand, 22760667 - 22760179
Alignment:
| Q |
1 |
ctttaggtttaggatacatatgagccttaatttgtcatactgctttggtttcttggaccatgtcagtacttgccgaggcaatccttagtcctttttggtc |
100 |
Q |
| |
|
||||||||||||||| ||||||||| ||||| |||||| |||| |||||||||||||||||| |||||||| | |||||||||||||||||||||||||| |
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|
| T |
22760667 |
ctttaggtttaggatccatatgagcattaatctgtcatgctgcattggtttcttggaccatgccagtacttacggaggcaatccttagtcctttttggtc |
22760568 |
T |
|
| Q |
101 |
tttaaaagttaaaacttattaaaccattatatttta-atacatgtactgttagctaggtcatttatggtcatgcttgtggttgtgctaacatacatcatg |
199 |
Q |
| |
|
| ||||||||| |||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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|
| T |
22760567 |
tataaaagttagaacttattaaaccacc---tttcacatacatgtactgttagctaggtcatttatggtcatgcttgtggttgtggtaacatatatcatg |
22760471 |
T |
|
| Q |
200 |
cttgcatatcaaaccattatatttacatatctaaagtttggtatttggtgcagaaaattcaggtttacacgtctttgacttcttggccaattcaatcctt |
299 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||| |
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|
| T |
22760470 |
cttacatatcaaaccattatatttacatatctaaagtttggtatttggtgcagaaaattgaggtttgcacgtctttgacttctttgccaattcaatcctt |
22760371 |
T |
|
| Q |
300 |
agagaggttctctttactgttcagaagggaaaactaggagcattttctcctcgaagaccagagttcttgaaaaattacaaatcaagcttggagttcttgg |
399 |
Q |
| |
|
||| ||||||||||| | ||||||||||||||| || || ||||||| | ||||||||||||||||||||||||||||||| ||||| |||||||||| |
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|
| T |
22760370 |
agaaaggttctctttgttattcagaagggaaaaccagatgctttttctcttggaagaccagagttcttgaaaaattacaaatctagcttagagttcttgg |
22760271 |
T |
|
| Q |
400 |
cttatctagaaggtagtagtcatatctcctttcagctaatctcaccttttcaccttgagaaacagaaataaagaagaaaatgtggccttaatg |
492 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||| |||||||||||| |
|
|
| T |
22760270 |
cttatctagaaggtagtagtcatatctccttttagctaatctca-cttttcaccttgagaaacaaaaataaagaagaaaaagtggccttaatg |
22760179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 195 - 314
Target Start/End: Complemental strand, 48408033 - 48407914
Alignment:
| Q |
195 |
tcatgcttgcatatcaaaccattatatttacatatctaaagtttggtatttggtgcagaaaattcaggtttacacgtctttgacttcttggccaattcaa |
294 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48408033 |
tcatgcttacatatcaaaccattatatttacatatctaaagtttggtatttggtgcagaaaattcaggtttacacgtctttgacttcttggccaattcaa |
48407934 |
T |
|
| Q |
295 |
tccttagagaggttctcttt |
314 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
48407933 |
tccttagagaggttctcttt |
48407914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 48408737 - 48408565
Alignment:
| Q |
1 |
ctttaggtttaggatacatatgagccttaatttgtcatactgctttggtttcttggaccatgtcagtacttgccgaggcaatccttagtcctttttggtc |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||| |||||| |
|
|
| T |
48408737 |
ctttaggtttaggatccatatgagccttaatctgtcatactgcattggtttcttggaccatgtcagtccttgccgaggcattccttagtccttcttggtc |
48408638 |
T |
|
| Q |
101 |
tttaaaagttaaaacttattaaaccattatatttta-atacatgtactgttagctaggtcatttatggtcatgctt |
175 |
Q |
| |
|
||||||||||| ||||||||||||| | ||| | ||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
48408637 |
tttaaaagttagaacttattaaacc---acctttcacatacatgtactgttagctaggtcatttatagtcatgctt |
48408565 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 48408198 - 48408026
Alignment:
| Q |
1 |
ctttaggtttaggatacatatgagccttaatttgtcatactgctttggtttcttggaccatgtcagtacttgccgaggcaatccttagtcctttttggtc |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||| |||||| |
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|
| T |
48408198 |
ctttaggtttaggatccatatgagccttaatctgtcatactgcattggtttcttggaccatgtcagtccttgccgaggcattccttagtccttcttggtc |
48408099 |
T |
|
| Q |
101 |
tttaaaagttaaaacttattaaaccattatatttta-atacatgtactgttagctaggtcatttatggtcatgctt |
175 |
Q |
| |
|
||||||||||| ||||||||||||| | ||| | || |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
48408098 |
tttaaaagttagaacttattaaacc---acctttcacatgcatgtactgttagctaggtcatttatagtcatgctt |
48408026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 48408572 - 48408520
Alignment:
| Q |
195 |
tcatgcttgcatatcaaaccattatatttacatatctaaagtttggtatttgg |
247 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48408572 |
tcatgcttacatatcaaaccattatatttacatatctaaagtttggtatttgg |
48408520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0004 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: scaffold0004
Description:
Target: scaffold0004; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 204 - 492
Target Start/End: Original strand, 76373 - 76659
Alignment:
| Q |
204 |
catatcaaaccattatatttacatatctaaagtttggtatttggtgcagaaaattcaggtttacacgtctttgacttcttggccaattcaatccttagag |
303 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
76373 |
catatgaaaccattatatttacatatctaaagtttggtatttggtgcagaaaattcaggtttacacgtctttgacttcttggccaattca-tccttagag |
76471 |
T |
|
| Q |
304 |
aggttctctttactgttcagaagggaaaactaggagcattttctcctcgaagaccagagttcttgaaaaattacaaatcaagcttggagttcttggctta |
403 |
Q |
| |
|
||||||||||| || ||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
76472 |
aggttctctttgctattcagaagggaaaaccaggtgcattttctcctcgaagaccagagttcttgaaaaattagaaatcaagcttggagttcttggctta |
76571 |
T |
|
| Q |
404 |
tctagaaggtagtagtcatatctcctttcagctaatctcaccttttcaccttgagaaacagaaataaagaagaaaatgtggccttaatg |
492 |
Q |
| |
|
||||||||||| ||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
76572 |
tctagaaggtataagttatatctcctttcaactaatctca-cttttcaccttgagaaacagaaataaagaagaatatgtggccttaatg |
76659 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 8 - 463
Target Start/End: Original strand, 42826924 - 42827377
Alignment:
| Q |
8 |
tttaggatacatatgagccttaatttgtcatactgctttggtttcttggaccatgtcagtacttgccgaggcaatccttagtcctttttggtctttaaa- |
106 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||| || ||||||||||||||||||||||| ||||||||||| |||||||||||| |
|
|
| T |
42826924 |
tttaggatccatatgagccttaatctgtcatacggcattggtttcttggaccatgtcagt---------------ccttagtccttcttggtctttaaat |
42827008 |
T |
|
| Q |
107 |
---agttaaaacttattaaa--ccattata-----ttttaatacatgtactgttagctaggtcatttatggtcatgcttgtggttgtgctaacatacatc |
196 |
Q |
| |
|
||||| ||||||||||| || || | ||||| ||||| |||||||||||||||||||||||||||||| |||||||||| |||||| ||| |
|
|
| T |
42827009 |
aaaagttagaacttattaaatcccttttcacatttttttactacatatactgttagctaggtcatttatggtcatgcaggtggttgtgccaacatatatc |
42827108 |
T |
|
| Q |
197 |
atgcttgcatatcaaaccattatatttacatatctaaagtttggtatttggtgcagaaaattcaggtttacacgtctttgacttcttggccaattcaatc |
296 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||| | |||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||| |
|
|
| T |
42827109 |
atgcttacatatcaaaccatttgatttacatatctaacggttggtacttggtgcagaaaattcaggtttacatgtctttgacttcttggccaactcaatc |
42827208 |
T |
|
| Q |
297 |
cttagagaggttctctttactgttcagaagggaaaactaggagcattttctcctcgaagac---cagagttcttgaaaaattacaaatcaagcttggagt |
393 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||| | ||| ||||||||| | |||||| |||||||||||||||||||||||||||||||||| | |
|
|
| T |
42827209 |
cttagagaggttctctttgctattcagaagggaaagccaggtgcattttctgttggaagaccaacagagttcttgaaaaattacaaatcaagcttggaat |
42827308 |
T |
|
| Q |
394 |
tcttggcttatctagaaggtagtagtcatatctcctttcagctaatctcaccttttcaccttgagaaaca |
463 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||| |||||||| | ||||||||||||||||||| |
|
|
| T |
42827309 |
tcttggcttatcttgaaggtattagtcatatctcctttccgctaatctta-cttttcaccttgagaaaca |
42827377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 126
Target Start/End: Original strand, 18322903 - 18323017
Alignment:
| Q |
12 |
ggatacatatgagccttaatttgtcatactgctttggtttcttggaccatgtcagtacttgccgaggcaatccttagtcctttttggtctttaaaagtta |
111 |
Q |
| |
|
|||| ||||||||| ||||| || ||| |||| || ||||||||||||||| ||| ||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
18322903 |
ggatccatatgagcattaatctgacatgctgcattcgtttcttggaccatgacagcacttgtcgaggcaatccttagtcctttttggtctataaaagtta |
18323002 |
T |
|
| Q |
112 |
aaacttattaaacca |
126 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
18323003 |
gaacttattaaacca |
18323017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 28941982 - 28941940
Alignment:
| Q |
1 |
ctttaggtttaggatacatatgagccttaatttgtcatactgc |
43 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| ||||||||||| |
|
|
| T |
28941982 |
ctttaggtttaggatccatatgaaccttaatctgtcatactgc |
28941940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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