View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17721_low_1 (Length: 635)
Name: NF17721_low_1
Description: NF17721
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17721_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 609; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 609; E-Value: 0
Query Start/End: Original strand, 12 - 620
Target Start/End: Original strand, 36409788 - 36410396
Alignment:
| Q |
12 |
ttctcctgctaatacaacagttttgggtggcaatattgctaagaaattagagtcacaaccaacgtaggaacaagttaaaatcaacatactagttcaccgg |
111 |
Q |
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| T |
36409788 |
ttctcctgctaatacaacagttttgggtggcaatattgctaagaaattagagtcacaaccaacgtaggaacaagttaaaatcaacatactagttcaccgg |
36409887 |
T |
|
| Q |
112 |
tcacattaagtcacatctaatcagctatatatgttttccacagttgacaaattggtcaaatgaaataaatcctgtaaacctataatatgcccagaataca |
211 |
Q |
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| T |
36409888 |
tcacattaagtcacatctaatcagctatatatgttttccacagttgacaaattggtcaaatgaaataaatcctgtaaacctataatatgcccagaataca |
36409987 |
T |
|
| Q |
212 |
attgttcaaatgaatgtatagctatagaaattaaaaccagaacctctttacaaagtttgaaggtaaaatacaaaagaacaagaattttagactaaagacc |
311 |
Q |
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| T |
36409988 |
attgttcaaatgaatgtatagctatagaaattaaaaccagaacctctttacaaagtttgaaggtaaaatacaaaagaacaagaattttagactaaagacc |
36410087 |
T |
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| Q |
312 |
aagttcagtgagcagaagagtttgaggatgttttcttgaaatctatcttatcaaccttaacctctccatcaattagttcatacacatagaccacaacacg |
411 |
Q |
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| T |
36410088 |
aagttcagtgagcagaagagtttgaggatgttttcttgaaatctatcttatcaaccttaacctctccatcaattagttcatacacatagaccacaacacg |
36410187 |
T |
|
| Q |
412 |
tagaccatcaatgtccatgaggacgaaacttgggttcacgtcatatgtgatgctgctataggcaccagttgcagaacctggatttataaccacaccaccc |
511 |
Q |
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| T |
36410188 |
tagaccatcaatgtccatgaggacgaaacttgggttcacgtcatatgtgatgctgctataggcaccagttgcagaacctggatttataaccacaccaccc |
36410287 |
T |
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| Q |
512 |
tcatgtttgtatgctgtaaactgatgggtgtgacctgtcacaaggatgtctacatcaagctgcctctgcagcattgctagtgaatctaggtctccccatg |
611 |
Q |
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| T |
36410288 |
tcatgtttgtatgctgtaaactgatgggtgtgacctgtcacaaggatgtctacatcaagctgcctctgcagcattgctagtgaatctaggtctccccatg |
36410387 |
T |
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| Q |
612 |
gaacaacct |
620 |
Q |
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| T |
36410388 |
gaacaacct |
36410396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 175; Significance: 7e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 7e-94
Query Start/End: Original strand, 338 - 620
Target Start/End: Complemental strand, 36911965 - 36911683
Alignment:
| Q |
338 |
gatgttttcttgaaatctatcttatcaaccttaacctctccatcaattagttcatacacatagaccacaacacgtagaccatcaatgtccatgaggacga |
437 |
Q |
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||||||||||| ||||| ||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||| |||| ||||||||||| || | |
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| T |
36911965 |
gatgttttcttaaaatcaatcttgtcaaccttaacctctccatcaataagttcatatacatagaccacgacacgcagagcatcgatgtccatgagcacaa |
36911866 |
T |
|
| Q |
438 |
aacttgggttcacgtcatatgtgatgctgctataggcaccagttgcagaacctggatttataaccacaccaccctcatgtttgtatgctgtaaactgatg |
537 |
Q |
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||||||||||||||||||| || |||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
36911865 |
aacttgggttcacgtcataggtcatgctgctgtaggcaccagatgcagaacctggatttataaccacaccaccctcatgtttgtaagcagtaaactgatg |
36911766 |
T |
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| Q |
538 |
ggtgtgacctgtcacaaggatgtctacatcaagctgcctctgcagcattgctagtgaatctaggtctccccatggaacaacct |
620 |
Q |
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|||||||||||| |||||||| |||||||||||||| ||||| ||||| || || || || |||||||||||||||| ||||| |
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| T |
36911765 |
ggtgtgacctgtgacaaggatatctacatcaagctgtctctgtagcatcgccagcgagtccaggtctccccatggaataacct |
36911683 |
T |
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